Wall clock time and date at job start Tue Mar 31 2020 11:26:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38287 * 119.92491 * 2 1 4 4 C 1.38109 * 120.06576 * 180.02562 * 3 2 1 5 5 C 1.38878 * 119.92977 * 0.23040 * 4 3 2 6 6 N 1.39927 * 120.06630 * 179.72286 * 5 4 3 7 7 C 1.34778 * 120.00426 * 33.29281 * 6 5 4 8 8 O 1.21296 * 119.99695 * 5.27234 * 7 6 5 9 9 C 1.50692 * 120.00463 * 185.27084 * 7 6 5 10 10 C 1.50699 * 109.47555 * 179.97438 * 9 7 6 11 11 N 1.29949 * 126.28510 * 90.02111 * 10 9 7 12 12 O 1.21306 * 110.24786 * 179.97438 * 11 10 9 13 13 C 1.33639 * 109.81210 * 0.02562 * 12 11 10 14 14 C 1.50700 * 126.55083 * 180.02562 * 13 12 11 15 15 C 1.53001 * 109.46716 * 269.97598 * 14 13 12 16 16 C 1.50700 * 109.47251 * 180.02562 * 15 14 13 17 17 H 1.08002 * 119.99755 * 359.97438 * 16 15 14 18 18 C 1.37868 * 120.00526 * 179.97438 * 16 15 14 19 19 N 1.31517 * 120.00441 * 179.97438 * 18 16 15 20 20 Si 1.86803 * 119.99794 * 359.97438 * 18 16 15 21 21 H 1.48509 * 109.46803 * 90.00516 * 20 18 16 22 22 H 1.48497 * 109.47393 * 210.00122 * 20 18 16 23 23 H 1.48498 * 109.47442 * 330.00420 * 20 18 16 24 24 N 1.31129 * 106.89910 * 359.76486 * 13 12 11 25 25 C 1.38867 * 119.85665 * 359.49527 * 5 4 3 26 26 C 1.38108 * 119.93280 * 0.50320 * 25 5 4 27 27 H 1.08997 * 109.47196 * 90.00330 * 1 2 3 28 28 H 1.09001 * 109.46970 * 210.00363 * 1 2 3 29 29 H 1.09004 * 109.47548 * 329.99737 * 1 2 3 30 30 H 1.07999 * 119.96687 * 359.97438 * 3 2 1 31 31 H 1.07999 * 120.03249 * 179.97438 * 4 3 2 32 32 H 0.96996 * 119.99827 * 213.28925 * 6 5 4 33 33 H 1.08996 * 109.47387 * 300.00010 * 9 7 6 34 34 H 1.09005 * 109.46988 * 59.99646 * 9 7 6 35 35 H 1.08999 * 109.47081 * 29.96580 * 14 13 12 36 36 H 1.08997 * 109.47536 * 149.97220 * 14 13 12 37 37 H 1.09007 * 109.47092 * 299.99543 * 15 14 13 38 38 H 1.08997 * 109.47426 * 59.99555 * 15 14 13 39 39 H 0.97000 * 120.00077 * 179.97438 * 19 18 16 40 40 H 1.08003 * 120.03350 * 180.23156 * 25 5 4 41 41 H 1.07996 * 119.96656 * 179.74852 * 26 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1969 1.1985 0.0000 4 6 3.5780 1.2019 -0.0005 5 6 4.2738 0.0000 -0.0059 6 7 5.6731 0.0002 -0.0123 7 6 6.3499 0.9747 0.6270 8 8 5.7503 1.7966 1.2874 9 6 7.8516 1.0431 0.5216 10 6 8.3585 2.2153 1.3216 11 7 8.7049 2.1994 2.5740 12 8 9.0695 3.3026 2.9227 13 6 8.9874 4.1527 1.8949 14 6 9.3464 5.6163 1.9098 15 6 8.1150 6.4394 2.2936 16 6 8.4737 7.9030 2.3079 17 1 9.4795 8.2149 2.0678 18 6 7.5181 8.8439 2.6276 19 7 7.8312 10.1212 2.6406 20 14 5.7783 8.3046 3.0422 21 1 5.6704 8.0615 4.5032 22 1 4.8222 9.3694 2.6457 23 1 5.4593 7.0542 2.3074 24 7 8.5402 3.4688 0.8693 25 6 3.5780 -1.2017 -0.0001 26 6 2.1969 -1.1984 0.0004 27 1 -0.3633 -0.0001 -1.0276 28 1 -0.3633 -0.8900 0.5139 29 1 -0.3634 0.8900 0.5139 30 1 1.6551 2.1328 -0.0004 31 1 4.1162 2.1382 -0.0010 32 1 6.1560 -0.7011 -0.4769 33 1 8.2855 0.1222 0.9109 34 1 8.1372 1.1659 -0.5232 35 1 10.1395 5.7884 2.6374 36 1 9.6900 5.9163 0.9199 37 1 7.3218 6.2673 1.5660 38 1 7.7714 6.1394 3.2835 39 1 7.1587 10.7832 2.8651 40 1 4.1163 -2.1380 -0.0005 41 1 1.6553 -2.1327 0.0008 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000290884878.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:26:45 Heat of formation + Delta-G solvation = 48.148558 kcal Electronic energy + Delta-G solvation = -24691.745016 eV Core-core repulsion = 20960.684309 eV Total energy + Delta-G solvation = -3731.060707 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.137 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -45.25924 -40.82450 -38.92883 -35.86077 -35.32747 -34.67877 -32.75602 -32.06013 -31.19105 -30.87737 -29.71710 -26.54694 -26.20767 -23.63143 -23.24458 -22.47389 -21.55405 -20.79707 -20.23425 -18.23711 -17.93936 -17.23691 -17.09150 -16.73241 -15.91696 -15.66713 -15.03325 -14.80501 -14.40647 -14.17413 -14.01959 -13.98084 -13.90244 -13.66582 -13.25934 -12.90408 -12.72270 -12.48779 -12.34934 -12.07456 -11.88053 -11.82678 -11.40384 -11.32035 -11.05524 -10.76565 -10.59184 -10.50141 -10.17591 -10.10678 -9.84762 -9.40181 -9.33471 -9.15847 -8.59146 -8.26545 -6.10456 -4.10876 0.97768 1.17834 1.45672 2.27553 2.29143 2.83459 3.23670 3.31865 3.39368 3.46736 3.54434 3.69454 4.17102 4.33448 4.42684 4.57771 4.65449 4.77747 4.84232 4.97836 5.02398 5.14857 5.23940 5.26619 5.33559 5.45535 5.49223 5.64291 5.78294 5.86203 5.97449 6.04473 6.05901 6.07801 6.25007 6.28373 6.39672 6.47575 6.79403 6.99712 7.07698 7.20296 7.65092 7.77671 8.41288 8.44603 8.91327 9.50801 11.02002 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.012005 B = 0.003196 C = 0.002597 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2331.730847 B = 8760.157696 C =10779.803374 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.104 4.104 3 C -0.099 4.099 4 C -0.115 4.115 5 C 0.142 3.858 6 N -0.675 5.675 7 C 0.517 3.483 8 O -0.498 6.498 9 C -0.042 4.042 10 C 0.175 3.825 11 N -0.385 5.385 12 O 0.075 5.925 13 C 0.213 3.787 14 C -0.019 4.019 15 C -0.008 4.008 16 C -0.524 4.524 17 H 0.078 0.922 18 C 0.074 3.926 19 N -0.898 5.898 20 Si 0.874 3.126 21 H -0.275 1.275 22 H -0.285 1.285 23 H -0.264 1.264 24 N -0.487 5.487 25 C -0.143 4.143 26 C -0.103 4.103 27 H 0.069 0.931 28 H 0.065 0.935 29 H 0.066 0.934 30 H 0.126 0.874 31 H 0.136 0.864 32 H 0.412 0.588 33 H 0.122 0.878 34 H 0.129 0.871 35 H 0.097 0.903 36 H 0.106 0.894 37 H 0.027 0.973 38 H 0.019 0.981 39 H 0.265 0.735 40 H 0.125 0.875 41 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.174 -26.088 -8.233 28.281 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.105 4.105 3 C -0.118 4.118 4 C -0.135 4.135 5 C 0.049 3.951 6 N -0.321 5.321 7 C 0.303 3.697 8 O -0.370 6.370 9 C -0.084 4.084 10 C -0.099 4.099 11 N -0.094 5.094 12 O 0.016 5.984 13 C -0.006 4.006 14 C -0.058 4.058 15 C -0.047 4.047 16 C -0.562 4.562 17 H 0.097 0.903 18 C -0.129 4.129 19 N -0.536 5.536 20 Si 0.701 3.299 21 H -0.200 1.200 22 H -0.211 1.211 23 H -0.189 1.189 24 N -0.220 5.220 25 C -0.163 4.163 26 C -0.122 4.122 27 H 0.088 0.912 28 H 0.084 0.916 29 H 0.085 0.915 30 H 0.144 0.856 31 H 0.154 0.846 32 H 0.247 0.753 33 H 0.140 0.860 34 H 0.147 0.853 35 H 0.116 0.884 36 H 0.124 0.876 37 H 0.045 0.955 38 H 0.038 0.962 39 H 0.075 0.925 40 H 0.143 0.857 41 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -7.758 -26.053 -7.644 28.238 hybrid contribution -0.653 -0.402 0.081 0.771 sum -8.411 -26.455 -7.563 28.772 Atomic orbital electron populations 1.20767 0.91118 1.02792 1.02231 1.19935 0.96235 0.93104 1.01186 1.20985 0.93550 0.97853 0.99413 1.21228 0.94348 0.97813 1.00117 1.17703 0.82196 0.94184 1.01038 1.43417 1.04859 1.29417 1.54390 1.20470 0.89537 0.80959 0.78741 1.90830 1.69878 1.38505 1.37768 1.19747 0.91720 0.94928 1.01957 1.24663 1.01649 0.94048 0.89500 1.74515 1.18023 1.02017 1.14891 1.85272 1.61203 1.13591 1.38300 1.29595 0.92504 0.98172 0.80305 1.20551 1.02072 0.77993 1.05201 1.19628 0.92356 0.95788 0.96905 1.20921 0.99132 0.88060 1.48107 0.90346 1.24925 0.98679 0.94749 0.94518 1.69890 1.34624 1.00404 1.48655 0.86860 0.84828 0.78873 0.79358 1.20049 1.21129 1.18883 1.71865 1.19395 1.01874 1.28911 1.20840 0.94552 0.96242 1.04687 1.20790 0.93257 0.97626 1.00512 0.91248 0.91649 0.91502 0.85599 0.84630 0.75251 0.85985 0.85272 0.88428 0.87551 0.95508 0.96239 0.92507 0.85697 0.85732 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.79 10.01 36.01 0.36 -0.42 16 2 C -0.10 -0.99 5.88 -104.59 -0.62 -1.61 16 3 C -0.10 -1.13 9.69 -39.61 -0.38 -1.51 16 4 C -0.11 -1.51 8.66 -39.39 -0.34 -1.85 16 5 C 0.14 1.58 6.28 -83.69 -0.53 1.06 16 6 N -0.67 -6.27 5.34 -9.86 -0.05 -6.32 16 7 C 0.52 6.63 7.56 -10.99 -0.08 6.55 16 8 O -0.50 -9.07 13.72 5.54 0.08 -9.00 16 9 C -0.04 -0.45 6.33 -29.04 -0.18 -0.63 16 10 C 0.18 2.86 6.71 -156.37 -1.05 1.81 16 11 N -0.39 -6.87 12.16 30.90 0.38 -6.49 16 12 O 0.07 1.38 11.31 18.11 0.20 1.58 16 13 C 0.21 3.97 7.77 -13.06 -0.10 3.87 16 14 C -0.02 -0.36 5.78 -27.88 -0.16 -0.52 16 15 C -0.01 -0.19 4.02 -27.88 -0.11 -0.31 16 16 C -0.52 -14.41 9.66 -34.44 -0.33 -14.74 16 17 H 0.08 2.24 7.99 -52.49 -0.42 1.82 16 18 C 0.07 2.12 5.47 -17.82 -0.10 2.02 16 19 N -0.90 -27.18 13.96 55.43 0.77 -26.41 16 20 Si 0.87 22.04 27.47 -169.99 -4.67 17.37 16 21 H -0.27 -6.82 7.11 56.52 0.40 -6.42 16 22 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 23 H -0.26 -6.66 6.54 56.52 0.37 -6.29 16 24 N -0.49 -9.00 11.55 -9.87 -0.11 -9.12 16 25 C -0.14 -1.27 9.96 -39.40 -0.39 -1.66 16 26 C -0.10 -0.89 9.69 -39.61 -0.38 -1.28 16 27 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 28 H 0.06 0.38 8.08 -51.93 -0.42 -0.04 16 29 H 0.07 0.46 8.08 -51.93 -0.42 0.04 16 30 H 0.13 1.28 8.06 -52.49 -0.42 0.86 16 31 H 0.14 2.08 6.41 -52.49 -0.34 1.75 16 32 H 0.41 2.01 8.82 -40.82 -0.36 1.65 16 33 H 0.12 0.88 8.14 -51.93 -0.42 0.45 16 34 H 0.13 1.00 8.14 -51.93 -0.42 0.57 16 35 H 0.10 1.64 8.14 -51.93 -0.42 1.21 16 36 H 0.11 1.89 8.14 -51.93 -0.42 1.47 16 37 H 0.03 0.66 7.20 -51.92 -0.37 0.29 16 38 H 0.02 0.46 7.57 -51.93 -0.39 0.07 16 39 H 0.27 7.54 8.31 -40.82 -0.34 7.20 16 40 H 0.13 0.77 8.06 -52.48 -0.42 0.34 16 41 H 0.12 0.77 8.06 -52.49 -0.42 0.35 16 LS Contribution 357.09 15.07 5.38 5.38 Total: -1.00 -35.90 357.09 -7.70 -43.60 By element: Atomic # 1 Polarization: 3.90 SS G_CDS: -5.27 Total: -1.38 kcal Atomic # 6 Polarization: -4.82 SS G_CDS: -4.40 Total: -9.22 kcal Atomic # 7 Polarization: -49.32 SS G_CDS: 0.98 Total: -48.34 kcal Atomic # 8 Polarization: -7.70 SS G_CDS: 0.28 Total: -7.42 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -4.67 Total: 17.37 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -35.90 -7.70 -43.60 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000290884878.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.750 kcal (2) G-P(sol) polarization free energy of solvation -35.902 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.847 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.699 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.601 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.149 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds