Wall clock time and date at job start Tue Mar 31 2020 11:26:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38287 * 119.92491 * 2 1 4 4 C 1.38109 * 120.06576 * 180.02562 * 3 2 1 5 5 C 1.38878 * 119.92977 * 0.23040 * 4 3 2 6 6 N 1.39927 * 120.06630 * 179.72286 * 5 4 3 7 7 C 1.34778 * 120.00426 * 33.29281 * 6 5 4 8 8 O 1.21296 * 119.99695 * 5.27234 * 7 6 5 9 9 C 1.50692 * 120.00463 * 185.27084 * 7 6 5 10 10 C 1.50699 * 109.47555 * 179.97438 * 9 7 6 11 11 N 1.29949 * 126.28510 * 90.02111 * 10 9 7 12 12 O 1.21306 * 110.24786 * 179.97438 * 11 10 9 13 13 C 1.33639 * 109.81210 * 0.02562 * 12 11 10 14 14 C 1.50700 * 126.55083 * 180.02562 * 13 12 11 15 15 C 1.53001 * 109.46716 * 269.97598 * 14 13 12 16 16 C 1.50700 * 109.47251 * 180.02562 * 15 14 13 17 17 H 1.08002 * 119.99755 * 359.97438 * 16 15 14 18 18 C 1.37868 * 120.00526 * 179.97438 * 16 15 14 19 19 N 1.31517 * 120.00441 * 179.97438 * 18 16 15 20 20 Si 1.86803 * 119.99794 * 359.97438 * 18 16 15 21 21 H 1.48509 * 109.46803 * 90.00516 * 20 18 16 22 22 H 1.48497 * 109.47393 * 210.00122 * 20 18 16 23 23 H 1.48498 * 109.47442 * 330.00420 * 20 18 16 24 24 N 1.31129 * 106.89910 * 359.76486 * 13 12 11 25 25 C 1.38867 * 119.85665 * 359.49527 * 5 4 3 26 26 C 1.38108 * 119.93280 * 0.50320 * 25 5 4 27 27 H 1.08997 * 109.47196 * 90.00330 * 1 2 3 28 28 H 1.09001 * 109.46970 * 210.00363 * 1 2 3 29 29 H 1.09004 * 109.47548 * 329.99737 * 1 2 3 30 30 H 1.07999 * 119.96687 * 359.97438 * 3 2 1 31 31 H 1.07999 * 120.03249 * 179.97438 * 4 3 2 32 32 H 0.96996 * 119.99827 * 213.28925 * 6 5 4 33 33 H 1.08996 * 109.47387 * 300.00010 * 9 7 6 34 34 H 1.09005 * 109.46988 * 59.99646 * 9 7 6 35 35 H 1.08999 * 109.47081 * 29.96580 * 14 13 12 36 36 H 1.08997 * 109.47536 * 149.97220 * 14 13 12 37 37 H 1.09007 * 109.47092 * 299.99543 * 15 14 13 38 38 H 1.08997 * 109.47426 * 59.99555 * 15 14 13 39 39 H 0.97000 * 120.00077 * 179.97438 * 19 18 16 40 40 H 1.08003 * 120.03350 * 180.23156 * 25 5 4 41 41 H 1.07996 * 119.96656 * 179.74852 * 26 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1969 1.1985 0.0000 4 6 3.5780 1.2019 -0.0005 5 6 4.2738 0.0000 -0.0059 6 7 5.6731 0.0002 -0.0123 7 6 6.3499 0.9747 0.6270 8 8 5.7503 1.7966 1.2874 9 6 7.8516 1.0431 0.5216 10 6 8.3585 2.2153 1.3216 11 7 8.7049 2.1994 2.5740 12 8 9.0695 3.3026 2.9227 13 6 8.9874 4.1527 1.8949 14 6 9.3464 5.6163 1.9098 15 6 8.1150 6.4394 2.2936 16 6 8.4737 7.9030 2.3079 17 1 9.4795 8.2149 2.0678 18 6 7.5181 8.8439 2.6276 19 7 7.8312 10.1212 2.6406 20 14 5.7783 8.3046 3.0422 21 1 5.6704 8.0615 4.5032 22 1 4.8222 9.3694 2.6457 23 1 5.4593 7.0542 2.3074 24 7 8.5402 3.4688 0.8693 25 6 3.5780 -1.2017 -0.0001 26 6 2.1969 -1.1984 0.0004 27 1 -0.3633 -0.0001 -1.0276 28 1 -0.3633 -0.8900 0.5139 29 1 -0.3634 0.8900 0.5139 30 1 1.6551 2.1328 -0.0004 31 1 4.1162 2.1382 -0.0010 32 1 6.1560 -0.7011 -0.4769 33 1 8.2855 0.1222 0.9109 34 1 8.1372 1.1659 -0.5232 35 1 10.1395 5.7884 2.6374 36 1 9.6900 5.9163 0.9199 37 1 7.3218 6.2673 1.5660 38 1 7.7714 6.1394 3.2835 39 1 7.1587 10.7832 2.8651 40 1 4.1163 -2.1380 -0.0005 41 1 1.6553 -2.1327 0.0008 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000290884878.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:26:44 Heat of formation + Delta-G solvation = 22.673788 kcal Electronic energy + Delta-G solvation = -24692.849685 eV Core-core repulsion = 20960.684309 eV Total energy + Delta-G solvation = -3732.165376 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.137 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -46.61774 -41.71468 -39.77297 -37.18861 -36.41839 -36.17302 -34.56358 -33.07262 -32.36525 -31.94132 -30.81347 -28.06411 -27.27096 -24.91936 -24.16830 -23.77847 -22.81187 -21.99880 -21.37547 -19.34517 -19.23924 -18.82741 -18.26754 -18.13590 -16.85172 -16.45323 -16.39413 -16.02778 -15.79008 -15.61438 -15.33967 -14.81833 -14.74522 -14.64835 -14.60908 -14.39702 -13.83098 -13.64794 -13.44847 -13.17826 -13.01816 -12.93157 -12.85605 -12.61506 -12.35424 -12.16055 -12.08604 -11.97334 -11.83623 -11.48333 -11.43832 -11.12502 -10.83435 -10.80543 -9.94096 -9.04445 -8.33525 -6.36744 0.05991 0.19172 0.39817 1.04666 1.29639 1.33131 1.37803 1.43770 1.79291 1.93827 2.30384 2.57956 2.77739 2.96085 3.02007 3.49753 3.84489 3.90941 3.97354 4.06669 4.13989 4.26851 4.36433 4.37196 4.43479 4.45027 4.53308 4.66321 4.80099 4.83756 4.85456 4.88637 5.02478 5.10537 5.21300 5.28785 5.31674 5.34316 5.45990 5.54331 5.65475 6.03267 6.20178 6.26466 6.70342 6.96433 7.06593 7.27839 8.82072 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.012005 B = 0.003196 C = 0.002597 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2331.730847 B = 8760.157696 C =10779.803374 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.107 4.107 3 C -0.120 4.120 4 C -0.145 4.145 5 C 0.124 3.876 6 N -0.651 5.651 7 C 0.516 3.484 8 O -0.563 6.563 9 C -0.040 4.040 10 C 0.179 3.821 11 N -0.399 5.399 12 O 0.064 5.936 13 C 0.207 3.793 14 C -0.009 4.009 15 C -0.004 4.004 16 C -0.524 4.524 17 H 0.059 0.941 18 C 0.020 3.980 19 N -0.939 5.939 20 Si 0.931 3.069 21 H -0.266 1.266 22 H -0.278 1.278 23 H -0.268 1.268 24 N -0.503 5.503 25 C -0.133 4.133 26 C -0.103 4.103 27 H 0.081 0.919 28 H 0.082 0.918 29 H 0.063 0.937 30 H 0.123 0.877 31 H 0.100 0.900 32 H 0.435 0.565 33 H 0.165 0.835 34 H 0.164 0.836 35 H 0.118 0.882 36 H 0.116 0.884 37 H 0.012 0.988 38 H 0.018 0.982 39 H 0.268 0.732 40 H 0.161 0.839 41 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.945 -29.943 -8.973 32.252 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.108 4.108 3 C -0.139 4.139 4 C -0.165 4.165 5 C 0.030 3.970 6 N -0.299 5.299 7 C 0.303 3.697 8 O -0.440 6.440 9 C -0.080 4.080 10 C -0.095 4.095 11 N -0.110 5.110 12 O 0.009 5.991 13 C -0.012 4.012 14 C -0.047 4.047 15 C -0.043 4.043 16 C -0.562 4.562 17 H 0.077 0.923 18 C -0.178 4.178 19 N -0.579 5.579 20 Si 0.756 3.244 21 H -0.191 1.191 22 H -0.203 1.203 23 H -0.192 1.192 24 N -0.237 5.237 25 C -0.153 4.153 26 C -0.121 4.121 27 H 0.099 0.901 28 H 0.101 0.899 29 H 0.082 0.918 30 H 0.141 0.859 31 H 0.118 0.882 32 H 0.275 0.725 33 H 0.183 0.817 34 H 0.181 0.819 35 H 0.136 0.864 36 H 0.134 0.866 37 H 0.031 0.969 38 H 0.036 0.964 39 H 0.078 0.922 40 H 0.178 0.822 41 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -8.507 -29.952 -8.404 32.251 hybrid contribution -0.431 0.715 0.248 0.871 sum -8.938 -29.237 -8.156 31.642 Atomic orbital electron populations 1.20820 0.89271 1.03513 1.03193 1.20276 0.97688 0.92739 1.00070 1.21102 0.93203 0.98987 1.00605 1.21127 0.95209 0.97522 1.02688 1.17878 0.82883 0.94341 1.01892 1.43188 1.04393 1.29033 1.53289 1.20853 0.90338 0.80554 0.77971 1.90818 1.71180 1.41081 1.40888 1.20113 0.90062 0.94486 1.03368 1.25570 0.99892 0.94693 0.89332 1.74500 1.19020 1.01774 1.15728 1.85250 1.61616 1.13902 1.38363 1.29405 0.92995 0.98133 0.80716 1.20325 1.00329 0.77731 1.06353 1.19471 0.94111 0.94282 0.96444 1.21229 0.98232 0.90103 1.46617 0.92285 1.25683 1.02401 0.94828 0.94886 1.69996 1.36008 1.01492 1.50395 0.85956 0.80710 0.78327 0.79442 1.19087 1.20342 1.19237 1.71881 1.19453 1.03053 1.29298 1.21225 0.94887 0.96504 1.02686 1.21250 0.93461 0.98459 0.98915 0.90069 0.89900 0.91839 0.85885 0.88192 0.72482 0.81744 0.81856 0.86382 0.86588 0.96927 0.96380 0.92249 0.82182 0.82437 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.33 10.01 71.24 0.71 -0.62 16 2 C -0.11 -1.89 5.88 -19.84 -0.12 -2.01 16 3 C -0.12 -2.83 9.69 22.25 0.22 -2.61 16 4 C -0.15 -3.98 8.66 22.39 0.19 -3.78 16 5 C 0.12 2.61 6.28 38.15 0.24 2.85 16 6 N -0.65 -10.81 5.34 -303.50 -1.62 -12.43 16 7 C 0.52 12.66 7.56 87.65 0.66 13.32 16 8 O -0.56 -21.06 13.72 -3.08 -0.04 -21.10 16 9 C -0.04 -0.74 6.33 29.10 0.18 -0.56 16 10 C 0.18 5.62 6.71 138.46 0.93 6.55 16 11 N -0.40 -13.87 12.16 -60.30 -0.73 -14.60 16 12 O 0.06 2.32 11.31 74.86 0.85 3.17 16 13 C 0.21 7.63 7.77 88.38 0.69 8.32 16 14 C -0.01 -0.32 5.78 29.85 0.17 -0.15 16 15 C 0.00 -0.21 4.02 29.85 0.12 -0.09 16 16 C -0.52 -29.21 9.66 25.60 0.25 -28.97 16 17 H 0.06 3.45 7.99 -2.91 -0.02 3.43 16 18 C 0.02 1.19 5.47 84.65 0.46 1.66 16 19 N -0.94 -57.86 13.96 21.44 0.30 -57.56 16 20 Si 0.93 46.11 27.47 68.60 1.88 47.99 16 21 H -0.27 -12.70 7.11 99.48 0.71 -12.00 16 22 H -0.28 -13.34 7.11 99.48 0.71 -12.64 16 23 H -0.27 -13.30 6.54 99.48 0.65 -12.65 16 24 N -0.50 -18.27 11.55 -303.19 -3.50 -21.77 16 25 C -0.13 -1.95 9.96 22.39 0.22 -1.72 16 26 C -0.10 -1.45 9.69 22.25 0.22 -1.23 16 27 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 28 H 0.08 0.71 8.08 -2.39 -0.02 0.69 16 29 H 0.06 0.80 8.08 -2.38 -0.02 0.78 16 30 H 0.12 2.74 8.06 -2.91 -0.02 2.71 16 31 H 0.10 3.40 6.41 -2.91 -0.02 3.38 16 32 H 0.43 2.71 8.82 -92.71 -0.82 1.89 16 33 H 0.17 1.65 8.14 -2.39 -0.02 1.63 16 34 H 0.16 1.91 8.14 -2.38 -0.02 1.89 16 35 H 0.12 3.87 8.14 -2.39 -0.02 3.85 16 36 H 0.12 4.07 8.14 -2.39 -0.02 4.05 16 37 H 0.01 0.62 7.20 -2.38 -0.02 0.61 16 38 H 0.02 0.85 7.57 -2.39 -0.02 0.84 16 39 H 0.27 15.50 8.31 -92.71 -0.77 14.73 16 40 H 0.16 1.16 8.06 -2.91 -0.02 1.14 16 41 H 0.16 1.18 8.06 -2.91 -0.02 1.16 16 Total: -1.00 -81.55 357.09 2.47 -79.07 By element: Atomic # 1 Polarization: 6.07 SS G_CDS: 0.19 Total: 6.27 kcal Atomic # 6 Polarization: -14.19 SS G_CDS: 5.15 Total: -9.04 kcal Atomic # 7 Polarization: -100.81 SS G_CDS: -5.56 Total: -106.36 kcal Atomic # 8 Polarization: -18.73 SS G_CDS: 0.80 Total: -17.93 kcal Atomic # 14 Polarization: 46.11 SS G_CDS: 1.88 Total: 47.99 kcal Total: -81.55 2.47 -79.07 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000290884878.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.747 kcal (2) G-P(sol) polarization free energy of solvation -81.547 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.200 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.474 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.073 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.674 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds