Wall clock time and date at job start Tue Mar 31 2020 11:26:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38302 * 119.96708 * 2 1 4 4 C 1.38256 * 120.14390 * 179.76422 * 3 2 1 5 5 C 1.38134 * 120.07095 * 0.51224 * 4 3 2 6 6 C 1.38852 * 119.92744 * 359.73966 * 5 4 3 7 7 N 1.39919 * 120.07017 * 179.97438 * 6 5 4 8 8 C 1.34773 * 120.00173 * 324.93986 * 7 6 5 9 9 O 1.21283 * 120.00378 * 4.61604 * 8 7 6 10 10 C 1.50703 * 120.00143 * 184.61867 * 8 7 6 11 11 C 1.50696 * 109.47155 * 179.97438 * 10 8 7 12 12 N 1.29940 * 126.28892 * 90.02756 * 11 10 8 13 13 O 1.21305 * 110.25848 * 179.97438 * 12 11 10 14 14 C 1.33642 * 109.80313 * 359.97438 * 13 12 11 15 15 C 1.50707 * 126.54706 * 179.97438 * 14 13 12 16 16 C 1.52998 * 109.47155 * 269.97721 * 15 14 13 17 17 C 1.50705 * 109.46782 * 180.02562 * 16 15 14 18 18 H 1.07998 * 120.00118 * 0.02562 * 17 16 15 19 19 C 1.37876 * 119.99821 * 180.02562 * 17 16 15 20 20 N 1.31518 * 119.99987 * 0.02562 * 19 17 16 21 21 Si 1.86795 * 119.99940 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.47104 * 359.97438 * 21 19 17 23 23 H 1.48503 * 109.47241 * 119.99980 * 21 19 17 24 24 H 1.48504 * 109.47177 * 239.99876 * 21 19 17 25 25 N 1.31132 * 106.90144 * 359.77147 * 14 13 12 26 26 C 1.38095 * 119.96542 * 180.27110 * 2 1 3 27 27 H 1.09004 * 109.47012 * 269.72139 * 1 2 3 28 28 H 1.08999 * 109.47258 * 29.72542 * 1 2 3 29 29 H 1.09001 * 109.46969 * 149.72813 * 1 2 3 30 30 H 1.08003 * 119.92331 * 359.97438 * 3 2 1 31 31 H 1.08005 * 119.96387 * 180.22598 * 4 3 2 32 32 H 1.08003 * 120.03777 * 179.72394 * 5 4 3 33 33 H 0.97005 * 120.00259 * 144.93463 * 7 6 5 34 34 H 1.08997 * 109.47441 * 299.99988 * 10 8 7 35 35 H 1.09005 * 109.46877 * 60.00240 * 10 8 7 36 36 H 1.08997 * 109.46784 * 29.98439 * 15 14 13 37 37 H 1.09001 * 109.46445 * 149.97923 * 15 14 13 38 38 H 1.08994 * 109.47376 * 299.99960 * 16 15 14 39 39 H 1.08997 * 109.46816 * 60.00770 * 16 15 14 40 40 H 0.97003 * 120.00053 * 180.02562 * 20 19 17 41 41 H 1.07998 * 120.03425 * 359.95822 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1978 1.1981 0.0000 4 6 3.5803 1.2024 0.0049 5 6 4.2762 0.0092 -0.0008 6 6 3.5856 -1.1955 -0.0061 7 7 4.2875 -2.4059 -0.0125 8 6 5.4515 -2.5064 -0.6843 9 8 5.9330 -1.5270 -1.2132 10 6 6.1548 -3.8359 -0.7785 11 6 7.4230 -3.6779 -1.5770 12 7 8.5969 -3.3815 -1.1053 13 8 9.4097 -3.3287 -2.0042 14 6 8.8133 -3.5952 -3.1701 15 6 9.4695 -3.6307 -4.5264 16 6 9.4058 -2.2396 -5.1603 17 6 10.0615 -2.2754 -6.5168 18 1 10.4812 -3.1980 -6.8896 19 6 10.1255 -1.1302 -7.2819 20 7 9.6149 -0.0065 -6.8277 21 14 10.9376 -1.1746 -8.9635 22 1 11.4296 -2.5483 -9.2394 23 1 9.9492 -0.7846 -10.0010 24 1 12.0800 -0.2261 -8.9868 25 7 7.5490 -3.8241 -2.9081 26 6 2.1967 -1.1963 -0.0057 27 1 -0.3633 -0.0050 1.0277 28 1 -0.3634 0.8924 -0.5096 29 1 -0.3633 -0.8876 -0.5181 30 1 1.6560 2.1324 -0.0004 31 1 4.1168 2.1397 0.0086 32 1 5.3562 0.0131 -0.0015 33 1 3.9363 -3.1727 0.4667 34 1 6.3975 -4.1904 0.2232 35 1 5.5031 -4.5576 -1.2713 36 1 10.5110 -3.9334 -4.4182 37 1 8.9478 -4.3447 -5.1637 38 1 8.3644 -1.9370 -5.2685 39 1 9.9275 -1.5257 -4.5230 40 1 9.6596 0.7991 -7.3661 41 1 1.6567 -2.1316 -0.0094 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000291014017.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:26:50 Heat of formation + Delta-G solvation = 45.432686 kcal Electronic energy + Delta-G solvation = -24575.143992 eV Core-core repulsion = 20843.965516 eV Total energy + Delta-G solvation = -3731.178476 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.137 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -45.12818 -40.74728 -38.84137 -35.71933 -35.13148 -34.53829 -32.81649 -32.56434 -31.10497 -30.11958 -29.01597 -27.05842 -25.81846 -23.74815 -22.91210 -22.50121 -21.83118 -20.61807 -20.09582 -18.08038 -17.66082 -16.96224 -16.87016 -16.40964 -16.33201 -15.73395 -14.95577 -14.67313 -14.50952 -14.14039 -14.02934 -13.89597 -13.84382 -13.25356 -13.13060 -12.79698 -12.47111 -12.37224 -12.25631 -11.93642 -11.84176 -11.55408 -11.35536 -11.16422 -10.98710 -10.72284 -10.58767 -10.50750 -10.10080 -10.09256 -9.90376 -9.28292 -9.14692 -8.90514 -8.41223 -8.31059 -6.04450 -4.09667 1.09867 1.22644 1.58045 2.33811 2.43065 2.93197 3.30671 3.35248 3.39005 3.42066 3.62076 3.80342 4.27113 4.43380 4.44584 4.60652 4.69445 4.92314 4.94089 5.07689 5.11123 5.22950 5.30899 5.31659 5.37131 5.52701 5.57655 5.58847 5.87938 5.98975 6.10331 6.13252 6.20241 6.26035 6.37690 6.41903 6.43501 6.66216 6.88503 7.08000 7.55529 7.62509 7.87285 7.90957 8.25874 8.57095 8.96039 9.54973 11.06674 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.013297 B = 0.002727 C = 0.002377 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2105.264848 B =10265.611834 C =11777.522581 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.072 4.072 3 C -0.136 4.136 4 C -0.097 4.097 5 C -0.124 4.124 6 C 0.150 3.850 7 N -0.675 5.675 8 C 0.517 3.483 9 O -0.494 6.494 10 C -0.041 4.041 11 C 0.175 3.825 12 N -0.388 5.388 13 O 0.073 5.927 14 C 0.219 3.781 15 C -0.028 4.028 16 C 0.027 3.973 17 C -0.525 4.525 18 H 0.062 0.938 19 C 0.059 3.941 20 N -0.889 5.889 21 Si 0.897 3.103 22 H -0.271 1.271 23 H -0.284 1.284 24 H -0.283 1.283 25 N -0.489 5.489 26 C -0.146 4.146 27 H 0.070 0.930 28 H 0.067 0.933 29 H 0.066 0.934 30 H 0.122 0.878 31 H 0.126 0.874 32 H 0.139 0.861 33 H 0.411 0.589 34 H 0.122 0.878 35 H 0.128 0.872 36 H 0.091 0.909 37 H 0.100 0.900 38 H 0.027 0.973 39 H 0.024 0.976 40 H 0.262 0.738 41 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.144 -5.625 17.687 24.599 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.073 4.073 3 C -0.155 4.155 4 C -0.115 4.115 5 C -0.145 4.145 6 C 0.056 3.944 7 N -0.322 5.322 8 C 0.302 3.698 9 O -0.366 6.366 10 C -0.083 4.083 11 C -0.099 4.099 12 N -0.097 5.097 13 O 0.015 5.985 14 C 0.000 4.000 15 C -0.067 4.067 16 C -0.011 4.011 17 C -0.563 4.563 18 H 0.080 0.920 19 C -0.143 4.143 20 N -0.528 5.528 21 Si 0.725 3.275 22 H -0.196 1.196 23 H -0.210 1.210 24 H -0.210 1.210 25 N -0.222 5.222 26 C -0.166 4.166 27 H 0.088 0.912 28 H 0.086 0.914 29 H 0.085 0.915 30 H 0.140 0.860 31 H 0.144 0.856 32 H 0.156 0.844 33 H 0.247 0.753 34 H 0.140 0.860 35 H 0.146 0.854 36 H 0.110 0.890 37 H 0.118 0.882 38 H 0.045 0.955 39 H 0.042 0.958 40 H 0.072 0.928 41 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -16.031 -4.767 17.980 24.556 hybrid contribution 0.289 -0.205 -0.818 0.891 sum -15.741 -4.972 17.163 23.813 Atomic orbital electron populations 1.20777 0.90967 1.02916 1.02253 1.19673 0.95957 0.92557 0.99121 1.21034 0.94246 0.97512 1.02666 1.21092 0.94101 0.97924 0.98428 1.21344 1.01468 0.90947 1.00695 1.17703 0.90701 0.85591 1.00407 1.43390 1.23166 1.13007 1.52593 1.20476 0.80560 0.90864 0.77871 1.90828 1.63786 1.38316 1.43676 1.19732 0.91006 0.96378 1.01136 1.24639 0.94626 1.01505 0.89097 1.74488 1.01121 1.20781 1.13328 1.85262 1.35289 1.64218 1.13718 1.29582 0.87340 0.90725 0.92378 1.20770 0.99416 1.04542 0.82006 1.19166 0.98691 0.87740 0.95539 1.21098 1.38137 0.95945 1.01157 0.91980 1.25029 0.95444 0.95442 0.98425 1.69995 1.44908 1.00155 1.37695 0.86459 0.79094 0.78153 0.83828 1.19576 1.20966 1.20952 1.71864 1.16016 1.22762 1.11596 1.20729 0.91848 0.98380 1.05686 0.91174 0.91391 0.91542 0.86021 0.85582 0.84364 0.75312 0.86032 0.85427 0.89037 0.88175 0.95461 0.95762 0.92814 0.85757 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.74 10.01 36.00 0.36 -0.38 16 2 C -0.07 -0.69 5.88 -104.65 -0.62 -1.30 16 3 C -0.14 -1.38 9.69 -39.55 -0.38 -1.76 16 4 C -0.10 -1.14 10.04 -39.61 -0.40 -1.53 16 5 C -0.12 -1.70 8.70 -39.39 -0.34 -2.04 16 6 C 0.15 1.77 6.30 -83.70 -0.53 1.25 16 7 N -0.68 -6.76 5.34 -9.86 -0.05 -6.82 16 8 C 0.52 7.06 7.67 -10.99 -0.08 6.98 16 9 O -0.49 -9.50 13.47 5.56 0.07 -9.42 16 10 C -0.04 -0.47 6.33 -29.04 -0.18 -0.66 16 11 C 0.17 3.03 6.71 -156.38 -1.05 1.98 16 12 N -0.39 -7.24 12.16 30.90 0.38 -6.87 16 13 O 0.07 1.42 11.31 18.10 0.20 1.63 16 14 C 0.22 4.33 7.77 -13.06 -0.10 4.23 16 15 C -0.03 -0.56 5.78 -27.88 -0.16 -0.72 16 16 C 0.03 0.69 4.96 -27.88 -0.14 0.55 16 17 C -0.53 -14.37 9.11 -34.44 -0.31 -14.68 16 18 H 0.06 1.59 7.74 -52.49 -0.41 1.19 16 19 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 20 N -0.89 -26.89 13.29 55.43 0.74 -26.15 16 21 Si 0.90 21.32 29.54 -169.99 -5.02 16.30 16 22 H -0.27 -6.22 7.11 56.52 0.40 -5.81 16 23 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 24 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 25 N -0.49 -9.62 11.55 -9.86 -0.11 -9.74 16 26 C -0.15 -1.43 9.62 -39.39 -0.38 -1.81 16 27 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 28 H 0.07 0.40 8.08 -51.93 -0.42 -0.02 16 29 H 0.07 0.39 8.08 -51.93 -0.42 -0.03 16 30 H 0.12 0.96 8.06 -52.48 -0.42 0.54 16 31 H 0.13 1.28 8.06 -52.48 -0.42 0.86 16 32 H 0.14 2.17 6.22 -52.48 -0.33 1.84 16 33 H 0.41 2.28 8.82 -40.82 -0.36 1.92 16 34 H 0.12 0.95 8.14 -51.93 -0.42 0.53 16 35 H 0.13 1.09 8.14 -51.93 -0.42 0.67 16 36 H 0.09 1.60 8.14 -51.93 -0.42 1.18 16 37 H 0.10 1.86 8.14 -51.93 -0.42 1.43 16 38 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 39 H 0.02 0.66 8.14 -51.93 -0.42 0.24 16 40 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 41 H 0.12 0.90 8.06 -52.49 -0.42 0.47 16 LS Contribution 360.42 15.07 5.43 5.43 Total: -1.00 -36.05 360.42 -8.07 -44.12 By element: Atomic # 1 Polarization: 5.12 SS G_CDS: -5.30 Total: -0.17 kcal Atomic # 6 Polarization: -3.90 SS G_CDS: -4.41 Total: -8.32 kcal Atomic # 7 Polarization: -50.52 SS G_CDS: 0.95 Total: -49.57 kcal Atomic # 8 Polarization: -8.07 SS G_CDS: 0.28 Total: -7.79 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.30 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -36.05 -8.07 -44.12 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291014017.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.556 kcal (2) G-P(sol) polarization free energy of solvation -36.050 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.506 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.073 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.124 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.433 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds