Wall clock time and date at job start Tue Mar 31 2020 11:26:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38302 * 119.96708 * 2 1 4 4 C 1.38256 * 120.14390 * 179.76422 * 3 2 1 5 5 C 1.38134 * 120.07095 * 0.51224 * 4 3 2 6 6 C 1.38852 * 119.92744 * 359.73966 * 5 4 3 7 7 N 1.39919 * 120.07017 * 179.97438 * 6 5 4 8 8 C 1.34773 * 120.00173 * 324.93986 * 7 6 5 9 9 O 1.21283 * 120.00378 * 4.61604 * 8 7 6 10 10 C 1.50703 * 120.00143 * 184.61867 * 8 7 6 11 11 C 1.50696 * 109.47155 * 179.97438 * 10 8 7 12 12 N 1.29940 * 126.28892 * 90.02756 * 11 10 8 13 13 O 1.21305 * 110.25848 * 179.97438 * 12 11 10 14 14 C 1.33642 * 109.80313 * 359.97438 * 13 12 11 15 15 C 1.50707 * 126.54706 * 179.97438 * 14 13 12 16 16 C 1.52998 * 109.47155 * 269.97721 * 15 14 13 17 17 C 1.50705 * 109.46782 * 180.02562 * 16 15 14 18 18 H 1.07998 * 120.00118 * 0.02562 * 17 16 15 19 19 C 1.37876 * 119.99821 * 180.02562 * 17 16 15 20 20 N 1.31518 * 119.99987 * 0.02562 * 19 17 16 21 21 Si 1.86795 * 119.99940 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.47104 * 359.97438 * 21 19 17 23 23 H 1.48503 * 109.47241 * 119.99980 * 21 19 17 24 24 H 1.48504 * 109.47177 * 239.99876 * 21 19 17 25 25 N 1.31132 * 106.90144 * 359.77147 * 14 13 12 26 26 C 1.38095 * 119.96542 * 180.27110 * 2 1 3 27 27 H 1.09004 * 109.47012 * 269.72139 * 1 2 3 28 28 H 1.08999 * 109.47258 * 29.72542 * 1 2 3 29 29 H 1.09001 * 109.46969 * 149.72813 * 1 2 3 30 30 H 1.08003 * 119.92331 * 359.97438 * 3 2 1 31 31 H 1.08005 * 119.96387 * 180.22598 * 4 3 2 32 32 H 1.08003 * 120.03777 * 179.72394 * 5 4 3 33 33 H 0.97005 * 120.00259 * 144.93463 * 7 6 5 34 34 H 1.08997 * 109.47441 * 299.99988 * 10 8 7 35 35 H 1.09005 * 109.46877 * 60.00240 * 10 8 7 36 36 H 1.08997 * 109.46784 * 29.98439 * 15 14 13 37 37 H 1.09001 * 109.46445 * 149.97923 * 15 14 13 38 38 H 1.08994 * 109.47376 * 299.99960 * 16 15 14 39 39 H 1.08997 * 109.46816 * 60.00770 * 16 15 14 40 40 H 0.97003 * 120.00053 * 180.02562 * 20 19 17 41 41 H 1.07998 * 120.03425 * 359.95822 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1978 1.1981 0.0000 4 6 3.5803 1.2024 0.0049 5 6 4.2762 0.0092 -0.0008 6 6 3.5856 -1.1955 -0.0061 7 7 4.2875 -2.4059 -0.0125 8 6 5.4515 -2.5064 -0.6843 9 8 5.9330 -1.5270 -1.2132 10 6 6.1548 -3.8359 -0.7785 11 6 7.4230 -3.6779 -1.5770 12 7 8.5969 -3.3815 -1.1053 13 8 9.4097 -3.3287 -2.0042 14 6 8.8133 -3.5952 -3.1701 15 6 9.4695 -3.6307 -4.5264 16 6 9.4058 -2.2396 -5.1603 17 6 10.0615 -2.2754 -6.5168 18 1 10.4812 -3.1980 -6.8896 19 6 10.1255 -1.1302 -7.2819 20 7 9.6149 -0.0065 -6.8277 21 14 10.9376 -1.1746 -8.9635 22 1 11.4296 -2.5483 -9.2394 23 1 9.9492 -0.7846 -10.0010 24 1 12.0800 -0.2261 -8.9868 25 7 7.5490 -3.8241 -2.9081 26 6 2.1967 -1.1963 -0.0057 27 1 -0.3633 -0.0050 1.0277 28 1 -0.3634 0.8924 -0.5096 29 1 -0.3633 -0.8876 -0.5181 30 1 1.6560 2.1324 -0.0004 31 1 4.1168 2.1397 0.0086 32 1 5.3562 0.0131 -0.0015 33 1 3.9363 -3.1727 0.4667 34 1 6.3975 -4.1904 0.2232 35 1 5.5031 -4.5576 -1.2713 36 1 10.5110 -3.9334 -4.4182 37 1 8.9478 -4.3447 -5.1637 38 1 8.3644 -1.9370 -5.2685 39 1 9.9275 -1.5257 -4.5230 40 1 9.6596 0.7991 -7.3661 41 1 1.6567 -2.1316 -0.0094 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000291014017.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:26:49 Heat of formation + Delta-G solvation = 19.959075 kcal Electronic energy + Delta-G solvation = -24576.248610 eV Core-core repulsion = 20843.965516 eV Total energy + Delta-G solvation = -3732.283095 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.137 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -46.58804 -41.72484 -39.76437 -37.15214 -36.35201 -36.09023 -34.53714 -33.46638 -32.49334 -31.52941 -30.01788 -27.77393 -27.74718 -25.08329 -24.39027 -23.43110 -23.25840 -22.01926 -21.15726 -19.31776 -18.96615 -18.45328 -18.24425 -17.88446 -17.25900 -16.73602 -16.50664 -15.98444 -15.78747 -15.59461 -15.23550 -14.82420 -14.68533 -14.57454 -14.34389 -14.06603 -13.77533 -13.42482 -13.38122 -13.10567 -13.00951 -12.84972 -12.78835 -12.65090 -12.47762 -12.13295 -12.12159 -11.95474 -11.89351 -11.46605 -11.33950 -11.09475 -10.77321 -10.60031 -9.72245 -9.18735 -8.21251 -6.34672 0.08466 0.22681 0.38031 1.06002 1.37454 1.44499 1.45036 1.58821 1.82469 1.94768 2.42444 2.60117 2.78307 2.98325 3.13724 3.51031 3.86235 3.90860 3.95505 4.14563 4.21115 4.30289 4.38765 4.42137 4.49877 4.50840 4.51562 4.69709 4.83053 4.88565 4.90461 4.93937 4.95085 5.20399 5.29385 5.37718 5.41498 5.49697 5.52230 5.62990 5.76014 6.04568 6.10522 6.26417 6.82141 6.97022 7.08330 7.35984 8.91679 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.013297 B = 0.002727 C = 0.002377 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2105.264848 B =10265.611834 C =11777.522581 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.074 4.074 3 C -0.139 4.139 4 C -0.114 4.114 5 C -0.158 4.158 6 C 0.132 3.868 7 N -0.651 5.651 8 C 0.515 3.485 9 O -0.562 6.562 10 C -0.038 4.038 11 C 0.179 3.821 12 N -0.401 5.401 13 O 0.060 5.940 14 C 0.209 3.791 15 C -0.013 4.013 16 C 0.033 3.967 17 C -0.536 4.536 18 H 0.083 0.917 19 C -0.005 4.005 20 N -0.938 5.938 21 Si 0.975 3.025 22 H -0.250 1.250 23 H -0.283 1.283 24 H -0.281 1.281 25 N -0.505 5.505 26 C -0.141 4.141 27 H 0.086 0.914 28 H 0.074 0.926 29 H 0.077 0.923 30 H 0.144 0.856 31 H 0.129 0.871 32 H 0.105 0.895 33 H 0.435 0.565 34 H 0.165 0.835 35 H 0.165 0.835 36 H 0.119 0.881 37 H 0.118 0.882 38 H -0.014 1.014 39 H -0.008 1.008 40 H 0.263 0.737 41 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.988 -7.962 17.826 26.547 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.074 4.074 3 C -0.158 4.158 4 C -0.132 4.132 5 C -0.178 4.178 6 C 0.038 3.962 7 N -0.299 5.299 8 C 0.302 3.698 9 O -0.439 6.439 10 C -0.079 4.079 11 C -0.095 4.095 12 N -0.113 5.113 13 O 0.006 5.994 14 C -0.011 4.011 15 C -0.052 4.052 16 C -0.005 4.005 17 C -0.573 4.573 18 H 0.101 0.899 19 C -0.203 4.203 20 N -0.578 5.578 21 Si 0.798 3.202 22 H -0.174 1.174 23 H -0.209 1.209 24 H -0.207 1.207 25 N -0.240 5.240 26 C -0.161 4.161 27 H 0.105 0.895 28 H 0.093 0.907 29 H 0.096 0.904 30 H 0.162 0.838 31 H 0.147 0.853 32 H 0.123 0.877 33 H 0.275 0.725 34 H 0.183 0.817 35 H 0.183 0.817 36 H 0.137 0.863 37 H 0.136 0.864 38 H 0.005 0.995 39 H 0.010 0.990 40 H 0.072 0.928 41 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -17.889 -7.161 18.158 26.477 hybrid contribution 0.734 0.574 -0.754 1.199 sum -17.155 -6.588 17.404 25.310 Atomic orbital electron populations 1.20843 0.88371 1.03878 1.03573 1.20149 0.97823 0.92082 0.97376 1.21344 0.93463 0.99126 1.01840 1.21250 0.95299 0.97569 0.99093 1.21271 1.00191 0.92933 1.03406 1.17890 0.91768 0.85414 1.01097 1.43150 1.21840 1.13383 1.51490 1.20893 0.81026 0.90770 0.77120 1.90825 1.65692 1.40571 1.46837 1.20111 0.88886 0.95802 1.03065 1.25585 0.96003 0.99223 0.88675 1.74469 1.01808 1.21730 1.13305 1.85237 1.35825 1.64605 1.13782 1.29515 0.87738 0.91264 0.92546 1.20530 1.01576 1.01052 0.82059 1.18943 0.95512 0.90599 0.95479 1.21604 1.37488 0.96679 1.01574 0.89903 1.26109 0.96100 0.94994 1.03094 1.70166 1.46854 1.01130 1.39696 0.85254 0.77760 0.79101 0.78037 1.17357 1.20872 1.20706 1.71870 1.15841 1.23159 1.13086 1.21075 0.90779 1.00021 1.04215 0.89525 0.90702 0.90381 0.83796 0.85329 0.87709 0.72470 0.81707 0.81710 0.86291 0.86426 0.99515 0.98988 0.92823 0.82530 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.07 10.01 71.23 0.71 -0.36 16 2 C -0.07 -1.24 5.88 -19.89 -0.12 -1.36 16 3 C -0.14 -2.71 9.69 22.29 0.22 -2.49 16 4 C -0.11 -2.82 10.04 22.25 0.22 -2.60 16 5 C -0.16 -4.61 8.70 22.39 0.19 -4.42 16 6 C 0.13 3.10 6.30 38.15 0.24 3.34 16 7 N -0.65 -12.23 5.34 -303.51 -1.62 -13.85 16 8 C 0.51 13.95 7.67 87.66 0.67 14.63 16 9 O -0.56 -22.87 13.47 -3.04 -0.04 -22.91 16 10 C -0.04 -0.80 6.33 29.10 0.18 -0.61 16 11 C 0.18 6.12 6.71 138.46 0.93 7.05 16 12 N -0.40 -15.12 12.16 -60.31 -0.73 -15.86 16 13 O 0.06 2.38 11.31 74.83 0.85 3.23 16 14 C 0.21 8.40 7.77 88.38 0.69 9.09 16 15 C -0.01 -0.53 5.78 29.85 0.17 -0.36 16 16 C 0.03 1.76 4.96 29.85 0.15 1.91 16 17 C -0.54 -29.50 9.11 25.60 0.23 -29.27 16 18 H 0.08 4.13 7.74 -2.91 -0.02 4.11 16 19 C -0.01 -0.31 5.46 84.65 0.46 0.16 16 20 N -0.94 -58.77 13.29 21.45 0.28 -58.49 16 21 Si 0.97 43.81 29.54 68.60 2.03 45.84 16 22 H -0.25 -10.32 7.11 99.48 0.71 -9.61 16 23 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 24 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 25 N -0.51 -19.96 11.55 -303.17 -3.50 -23.46 16 26 C -0.14 -2.45 9.62 22.39 0.22 -2.24 16 27 H 0.09 0.61 8.14 -2.38 -0.02 0.59 16 28 H 0.07 0.65 8.08 -2.39 -0.02 0.63 16 29 H 0.08 0.61 8.08 -2.39 -0.02 0.59 16 30 H 0.14 2.05 8.06 -2.91 -0.02 2.03 16 31 H 0.13 2.90 8.06 -2.91 -0.02 2.88 16 32 H 0.10 3.73 6.22 -2.91 -0.02 3.71 16 33 H 0.43 3.55 8.82 -92.70 -0.82 2.74 16 34 H 0.17 1.98 8.14 -2.39 -0.02 1.96 16 35 H 0.17 2.21 8.14 -2.38 -0.02 2.19 16 36 H 0.12 4.03 8.14 -2.39 -0.02 4.01 16 37 H 0.12 4.25 8.14 -2.39 -0.02 4.23 16 38 H -0.01 -0.83 8.14 -2.39 -0.02 -0.85 16 39 H -0.01 -0.49 8.14 -2.39 -0.02 -0.51 16 40 H 0.26 15.48 8.31 -92.71 -0.77 14.71 16 41 H 0.16 1.64 8.06 -2.91 -0.02 1.61 16 Total: -1.00 -84.32 360.42 2.68 -81.64 By element: Atomic # 1 Polarization: 11.15 SS G_CDS: 0.25 Total: 11.40 kcal Atomic # 6 Polarization: -12.71 SS G_CDS: 5.17 Total: -7.53 kcal Atomic # 7 Polarization: -106.09 SS G_CDS: -5.57 Total: -111.66 kcal Atomic # 8 Polarization: -20.49 SS G_CDS: 0.81 Total: -19.69 kcal Atomic # 14 Polarization: 43.81 SS G_CDS: 2.03 Total: 45.84 kcal Total: -84.32 2.68 -81.64 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291014017.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.600 kcal (2) G-P(sol) polarization free energy of solvation -84.323 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.277 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.682 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.641 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.959 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds