Wall clock time and date at job start Tue Mar 31 2020 10:44:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31506 * 1 3 3 Si 1.86803 * 120.00020 * 2 1 4 4 H 1.48500 * 109.47250 * 179.97438 * 3 2 1 5 5 H 1.48491 * 109.47191 * 299.99920 * 3 2 1 6 6 H 1.48499 * 109.47202 * 60.00204 * 3 2 1 7 7 C 1.37876 * 120.00264 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00229 * 179.97438 * 7 2 1 9 9 C 1.50707 * 119.99554 * 0.02562 * 7 2 1 10 10 C 1.53005 * 109.46687 * 179.97438 * 9 7 2 11 11 C 1.50697 * 109.46685 * 179.97438 * 10 9 7 12 12 N 1.30973 * 126.43988 * 90.05085 * 11 10 9 13 13 C 1.35229 * 105.58507 * 179.97438 * 12 11 10 14 14 C 1.48356 * 126.41907 * 179.97438 * 13 12 11 15 15 C 1.39947 * 120.47121 * 179.73461 * 14 13 12 16 16 C 1.38111 * 118.37460 * 179.75293 * 15 14 13 17 17 C 1.39045 * 119.23785 * 0.52311 * 16 15 14 18 18 O 1.35615 * 119.55374 * 179.73666 * 17 16 15 19 19 C 1.42895 * 117.00141 * 179.97438 * 18 17 16 20 20 C 1.53002 * 109.47545 * 180.02562 * 19 18 17 21 21 C 1.52996 * 117.49638 * 243.74789 * 20 19 18 22 22 C 1.52994 * 117.49909 * 175.08843 * 20 19 18 23 23 N 1.32316 * 120.89069 * 359.72283 * 17 16 15 24 24 C 1.31787 * 121.76951 * 0.02562 * 23 17 16 25 25 N 1.30796 * 107.16431 * 359.97438 * 13 12 11 26 26 O 1.21293 * 110.09206 * 359.97438 * 25 13 12 27 27 H 0.97003 * 119.99793 * 0.02562 * 1 2 3 28 28 H 1.08991 * 109.47332 * 60.00146 * 9 7 2 29 29 H 1.09000 * 109.46567 * 299.99604 * 9 7 2 30 30 H 1.08996 * 109.47542 * 59.99859 * 10 9 7 31 31 H 1.09001 * 109.47102 * 299.99677 * 10 9 7 32 32 H 1.08003 * 120.80786 * 0.02562 * 15 14 13 33 33 H 1.08003 * 120.38350 * 180.26080 * 16 15 14 34 34 H 1.09005 * 109.47197 * 300.00871 * 19 18 17 35 35 H 1.09000 * 109.47244 * 60.00014 * 19 18 17 36 36 H 1.08999 * 115.54583 * 29.41280 * 20 19 18 37 37 H 1.09006 * 117.50094 * 359.97438 * 21 20 19 38 38 H 1.08998 * 117.50219 * 145.01634 * 21 20 19 39 39 H 1.09006 * 117.49646 * 214.97617 * 22 20 19 40 40 H 1.08998 * 117.50108 * 359.97438 * 22 20 19 41 41 H 1.08004 * 119.65884 * 180.02562 * 24 23 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3964 -1.2124 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2509 -2.4991 0.0005 10 6 2.2452 -3.6621 0.0005 11 6 1.4917 -4.9671 0.0012 12 7 1.1032 -5.6416 -1.0522 13 6 0.4716 -6.7359 -0.5702 14 6 -0.1524 -7.8172 -1.3717 15 6 -0.7718 -8.9016 -0.7402 16 6 -1.3434 -9.8812 -1.5283 17 6 -1.2758 -9.7647 -2.9122 18 8 -1.8302 -10.7256 -3.6923 19 6 -1.7296 -10.5508 -5.1069 20 6 -2.4078 -11.7251 -5.8155 21 6 -1.5280 -12.6351 -6.6749 22 6 -2.5087 -11.6668 -7.3410 23 7 -0.6780 -8.7288 -3.4784 24 6 -0.1248 -7.7705 -2.7625 25 7 0.5139 -6.6625 0.7350 26 8 1.0960 -5.6548 1.0770 27 1 -0.4850 0.8401 -0.0004 28 1 0.6247 -2.5571 -0.8896 29 1 0.6240 -2.5566 0.8904 30 1 2.8719 -3.6043 0.8904 31 1 2.8719 -3.6043 -0.8895 32 1 -0.8059 -8.9685 0.3372 33 1 -1.8336 -10.7301 -1.0750 34 1 -2.2206 -9.6209 -5.3940 35 1 -0.6789 -10.5105 -5.3943 36 1 -3.2327 -12.1879 -5.2738 37 1 -0.4660 -12.3970 -6.7358 38 1 -1.7743 -13.6966 -6.6990 39 1 -3.3998 -12.0917 -7.8030 40 1 -2.0922 -10.7918 -7.8399 41 1 0.3539 -6.9401 -3.2603 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000291140806.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:44:51 Heat of formation + Delta-G solvation = 78.855011 kcal Electronic energy + Delta-G solvation = -23971.510505 eV Core-core repulsion = 20241.781330 eV Total energy + Delta-G solvation = -3729.729175 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.137 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -45.16294 -40.87961 -38.74999 -37.14878 -35.64084 -34.58221 -33.06192 -32.38181 -30.93945 -29.98851 -27.92039 -25.92961 -24.75957 -23.88193 -22.93945 -22.83660 -21.92905 -21.05258 -20.54135 -18.79319 -17.77059 -17.45644 -17.18117 -16.48996 -16.36645 -15.82071 -15.67436 -14.89052 -14.56914 -14.49090 -14.11133 -13.86601 -13.66293 -13.58052 -13.29133 -12.59125 -12.44185 -12.24369 -12.10972 -11.95643 -11.69982 -11.60565 -11.32718 -11.03846 -10.95457 -10.85274 -10.73252 -10.40563 -10.31969 -10.17708 -10.01683 -9.91154 -9.44163 -9.28919 -8.48813 -8.47856 -6.11905 -4.16757 0.53897 0.95262 1.64398 2.57030 2.62720 3.23360 3.26630 3.34165 3.34753 3.37864 3.60601 3.64456 4.01992 4.18154 4.28992 4.38031 4.42746 4.50520 4.67329 4.81946 4.88524 4.91613 5.12734 5.19343 5.21923 5.24987 5.26275 5.43047 5.51502 5.63173 5.65403 5.72420 5.85479 5.91493 6.05730 6.11909 6.18498 6.31376 6.57620 6.93757 7.46020 7.52510 7.54201 7.83552 8.18501 8.45205 8.88785 9.48511 10.99319 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.020818 B = 0.002065 C = 0.001934 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1344.674528 B =13558.445673 C =14474.495546 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.059 3.941 3 Si 0.898 3.102 4 H -0.271 1.271 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.526 4.526 8 H 0.063 0.937 9 C 0.027 3.973 10 C -0.029 4.029 11 C 0.223 3.777 12 N -0.491 5.491 13 C 0.211 3.789 14 C -0.101 4.101 15 C -0.008 4.008 16 C -0.191 4.191 17 C 0.333 3.667 18 O -0.301 6.301 19 C 0.101 3.899 20 C -0.160 4.160 21 C -0.177 4.177 22 C -0.168 4.168 23 N -0.539 5.539 24 C 0.189 3.811 25 N -0.390 5.390 26 O 0.074 5.926 27 H 0.263 0.737 28 H 0.027 0.973 29 H 0.024 0.976 30 H 0.093 0.907 31 H 0.102 0.898 32 H 0.150 0.850 33 H 0.148 0.852 34 H 0.074 0.926 35 H 0.070 0.930 36 H 0.115 0.885 37 H 0.097 0.903 38 H 0.097 0.903 39 H 0.100 0.900 40 H 0.099 0.901 41 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.773 -23.376 -8.481 25.021 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.143 4.143 3 Si 0.725 3.275 4 H -0.195 1.195 5 H -0.209 1.209 6 H -0.209 1.209 7 C -0.564 4.564 8 H 0.081 0.919 9 C -0.011 4.011 10 C -0.069 4.069 11 C 0.004 3.996 12 N -0.224 5.224 13 C -0.059 4.059 14 C -0.105 4.105 15 C -0.035 4.035 16 C -0.212 4.212 17 C 0.153 3.847 18 O -0.208 6.208 19 C 0.026 3.974 20 C -0.179 4.179 21 C -0.214 4.214 22 C -0.205 4.205 23 N -0.262 5.262 24 C 0.031 3.969 25 N -0.100 5.100 26 O 0.016 5.984 27 H 0.072 0.928 28 H 0.045 0.955 29 H 0.043 0.957 30 H 0.111 0.889 31 H 0.120 0.880 32 H 0.167 0.833 33 H 0.166 0.834 34 H 0.092 0.908 35 H 0.088 0.912 36 H 0.133 0.867 37 H 0.115 0.885 38 H 0.116 0.884 39 H 0.119 0.881 40 H 0.117 0.883 41 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges -3.432 -24.155 -9.232 26.085 hybrid contribution 0.389 1.178 0.809 1.481 sum -3.043 -22.976 -8.423 24.660 Atomic orbital electron populations 1.69973 1.06165 1.26901 1.49864 1.25016 0.94873 0.99484 0.94905 0.86449 0.80050 0.83339 0.77653 1.19549 1.20946 1.20940 1.21100 0.93213 0.90156 1.51927 0.91927 1.19178 0.93582 0.89823 0.98559 1.20810 0.97994 0.83470 1.04584 1.29591 0.93809 0.96870 0.79370 1.72007 1.16676 1.04769 1.28942 1.23481 0.99727 0.94972 0.87755 1.18168 1.04821 0.94108 0.93397 1.21437 0.90809 0.90190 1.01054 1.20941 1.06928 1.02789 0.90511 1.19964 0.89335 0.86611 0.88756 1.86186 1.72476 1.42730 1.19417 1.22177 1.00882 0.97509 0.76843 1.22164 1.02846 0.99689 0.93159 1.23125 0.97351 0.97190 1.03700 1.23005 1.02029 1.02200 0.93301 1.67462 1.14557 1.03485 1.40712 1.22616 0.90775 0.94280 0.89235 1.74792 1.16253 1.04281 1.14691 1.85264 1.52187 1.24777 1.36179 0.92777 0.95459 0.95735 0.88911 0.88016 0.83253 0.83404 0.90818 0.91152 0.86653 0.88453 0.88434 0.88147 0.88290 0.80759 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.83 13.29 55.43 0.74 -25.10 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 3 Si 0.90 20.66 29.54 -169.99 -5.02 15.64 16 4 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 5 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 6 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 7 C -0.53 -13.78 9.11 -34.44 -0.31 -14.09 16 8 H 0.06 1.55 7.74 -52.49 -0.41 1.14 16 9 C 0.03 0.64 4.96 -27.88 -0.14 0.50 16 10 C -0.03 -0.54 5.78 -27.88 -0.16 -0.70 16 11 C 0.22 4.07 7.75 -12.98 -0.10 3.97 16 12 N -0.49 -9.02 11.27 -9.87 -0.11 -9.13 16 13 C 0.21 3.61 7.81 -156.11 -1.22 2.39 16 14 C -0.10 -1.45 5.89 -104.74 -0.62 -2.06 16 15 C -0.01 -0.10 9.82 -38.99 -0.38 -0.48 16 16 C -0.19 -2.07 10.03 -39.33 -0.39 -2.46 16 17 C 0.33 4.04 7.49 -17.04 -0.13 3.91 16 18 O -0.30 -3.35 10.11 -18.54 -0.19 -3.54 16 19 C 0.10 0.94 5.58 37.16 0.21 1.15 16 20 C -0.16 -1.18 6.05 -90.62 -0.55 -1.73 16 21 C -0.18 -1.09 10.18 -26.70 -0.27 -1.37 16 22 C -0.17 -0.99 10.25 -26.70 -0.27 -1.27 16 23 N -0.54 -7.07 9.19 -13.05 -0.12 -7.19 16 24 C 0.19 2.58 10.86 -17.22 -0.19 2.40 16 25 N -0.39 -6.87 11.93 30.98 0.37 -6.50 16 26 O 0.07 1.34 11.29 18.02 0.20 1.54 16 27 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 28 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 29 H 0.02 0.63 8.14 -51.93 -0.42 0.20 16 30 H 0.09 1.52 8.14 -51.93 -0.42 1.10 16 31 H 0.10 1.76 8.14 -51.93 -0.42 1.34 16 32 H 0.15 1.61 7.94 -52.48 -0.42 1.19 16 33 H 0.15 1.21 8.06 -52.48 -0.42 0.79 16 34 H 0.07 0.71 8.10 -51.93 -0.42 0.29 16 35 H 0.07 0.66 7.84 -51.93 -0.41 0.25 16 36 H 0.12 0.83 8.14 -51.93 -0.42 0.41 16 37 H 0.10 0.59 8.03 -51.93 -0.42 0.18 16 38 H 0.10 0.51 8.14 -51.93 -0.42 0.09 16 39 H 0.10 0.48 8.14 -51.93 -0.42 0.06 16 40 H 0.10 0.56 8.14 -51.93 -0.42 0.13 16 41 H 0.18 2.30 7.88 -52.48 -0.41 1.89 16 LS Contribution 364.00 15.07 5.49 5.49 Total: -1.00 -30.07 364.00 -8.69 -38.76 By element: Atomic # 1 Polarization: 3.76 SS G_CDS: -5.42 Total: -1.66 kcal Atomic # 6 Polarization: -3.69 SS G_CDS: -4.63 Total: -8.32 kcal Atomic # 7 Polarization: -48.79 SS G_CDS: 0.87 Total: -47.91 kcal Atomic # 8 Polarization: -2.02 SS G_CDS: 0.02 Total: -2.00 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -5.02 Total: 15.64 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -30.07 -8.69 -38.76 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291140806.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.620 kcal (2) G-P(sol) polarization free energy of solvation -30.072 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.548 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.693 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.765 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.855 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds