Wall clock time and date at job start Tue Mar 31 2020 10:44:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31506 * 1 3 3 Si 1.86803 * 120.00020 * 2 1 4 4 H 1.48500 * 109.47250 * 179.97438 * 3 2 1 5 5 H 1.48491 * 109.47191 * 299.99920 * 3 2 1 6 6 H 1.48499 * 109.47202 * 60.00204 * 3 2 1 7 7 C 1.37876 * 120.00264 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00229 * 179.97438 * 7 2 1 9 9 C 1.50707 * 119.99554 * 0.02562 * 7 2 1 10 10 C 1.53005 * 109.46687 * 179.97438 * 9 7 2 11 11 C 1.50697 * 109.46685 * 179.97438 * 10 9 7 12 12 N 1.30973 * 126.43988 * 90.05085 * 11 10 9 13 13 C 1.35229 * 105.58507 * 179.97438 * 12 11 10 14 14 C 1.48356 * 126.41907 * 179.97438 * 13 12 11 15 15 C 1.39947 * 120.47121 * 179.73461 * 14 13 12 16 16 C 1.38111 * 118.37460 * 179.75293 * 15 14 13 17 17 C 1.39045 * 119.23785 * 0.52311 * 16 15 14 18 18 O 1.35615 * 119.55374 * 179.73666 * 17 16 15 19 19 C 1.42895 * 117.00141 * 179.97438 * 18 17 16 20 20 C 1.53002 * 109.47545 * 180.02562 * 19 18 17 21 21 C 1.52996 * 117.49638 * 243.74789 * 20 19 18 22 22 C 1.52994 * 117.49909 * 175.08843 * 20 19 18 23 23 N 1.32316 * 120.89069 * 359.72283 * 17 16 15 24 24 C 1.31787 * 121.76951 * 0.02562 * 23 17 16 25 25 N 1.30796 * 107.16431 * 359.97438 * 13 12 11 26 26 O 1.21293 * 110.09206 * 359.97438 * 25 13 12 27 27 H 0.97003 * 119.99793 * 0.02562 * 1 2 3 28 28 H 1.08991 * 109.47332 * 60.00146 * 9 7 2 29 29 H 1.09000 * 109.46567 * 299.99604 * 9 7 2 30 30 H 1.08996 * 109.47542 * 59.99859 * 10 9 7 31 31 H 1.09001 * 109.47102 * 299.99677 * 10 9 7 32 32 H 1.08003 * 120.80786 * 0.02562 * 15 14 13 33 33 H 1.08003 * 120.38350 * 180.26080 * 16 15 14 34 34 H 1.09005 * 109.47197 * 300.00871 * 19 18 17 35 35 H 1.09000 * 109.47244 * 60.00014 * 19 18 17 36 36 H 1.08999 * 115.54583 * 29.41280 * 20 19 18 37 37 H 1.09006 * 117.50094 * 359.97438 * 21 20 19 38 38 H 1.08998 * 117.50219 * 145.01634 * 21 20 19 39 39 H 1.09006 * 117.49646 * 214.97617 * 22 20 19 40 40 H 1.08998 * 117.50108 * 359.97438 * 22 20 19 41 41 H 1.08004 * 119.65884 * 180.02562 * 24 23 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3964 -1.2124 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2509 -2.4991 0.0005 10 6 2.2452 -3.6621 0.0005 11 6 1.4917 -4.9671 0.0012 12 7 1.1032 -5.6416 -1.0522 13 6 0.4716 -6.7359 -0.5702 14 6 -0.1524 -7.8172 -1.3717 15 6 -0.7718 -8.9016 -0.7402 16 6 -1.3434 -9.8812 -1.5283 17 6 -1.2758 -9.7647 -2.9122 18 8 -1.8302 -10.7256 -3.6923 19 6 -1.7296 -10.5508 -5.1069 20 6 -2.4078 -11.7251 -5.8155 21 6 -1.5280 -12.6351 -6.6749 22 6 -2.5087 -11.6668 -7.3410 23 7 -0.6780 -8.7288 -3.4784 24 6 -0.1248 -7.7705 -2.7625 25 7 0.5139 -6.6625 0.7350 26 8 1.0960 -5.6548 1.0770 27 1 -0.4850 0.8401 -0.0004 28 1 0.6247 -2.5571 -0.8896 29 1 0.6240 -2.5566 0.8904 30 1 2.8719 -3.6043 0.8904 31 1 2.8719 -3.6043 -0.8895 32 1 -0.8059 -8.9685 0.3372 33 1 -1.8336 -10.7301 -1.0750 34 1 -2.2206 -9.6209 -5.3940 35 1 -0.6789 -10.5105 -5.3943 36 1 -3.2327 -12.1879 -5.2738 37 1 -0.4660 -12.3970 -6.7358 38 1 -1.7743 -13.6966 -6.6990 39 1 -3.3998 -12.0917 -7.8030 40 1 -2.0922 -10.7918 -7.8399 41 1 0.3539 -6.9401 -3.2603 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000291140806.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:44:51 Heat of formation + Delta-G solvation = 60.372907 kcal Electronic energy + Delta-G solvation = -23972.311950 eV Core-core repulsion = 20241.781330 eV Total energy + Delta-G solvation = -3730.530619 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.137 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -46.55055 -41.83242 -39.57505 -37.81494 -37.04138 -36.20558 -34.58288 -33.66365 -32.25528 -31.39738 -28.69749 -27.75385 -25.96004 -24.98564 -24.26291 -23.49614 -23.29036 -22.00991 -21.63092 -19.69487 -19.21407 -18.82021 -18.38322 -18.04392 -17.30407 -16.98258 -16.49240 -16.41159 -15.72739 -15.67143 -15.22938 -15.07895 -14.76711 -14.43790 -14.39852 -14.28011 -13.71337 -13.57530 -13.37735 -13.24967 -12.84402 -12.64799 -12.48615 -12.38357 -12.27676 -12.20655 -11.94116 -11.92808 -11.45692 -11.32740 -11.22615 -11.03330 -10.88403 -10.80426 -10.56321 -9.54939 -8.19216 -6.30766 -0.56945 -0.00058 0.26125 1.32539 1.46583 1.47613 1.60304 1.74111 1.81477 2.38453 2.46357 2.58085 2.80801 2.86624 3.09394 3.16676 3.65480 3.67891 3.79907 3.88112 3.91846 4.03089 4.14501 4.20031 4.38001 4.46765 4.50438 4.53491 4.55078 4.57606 4.71467 4.75751 4.89168 4.93762 4.98106 5.01552 5.08074 5.21072 5.23928 5.46171 5.55529 5.79547 6.03214 6.14795 6.54830 6.85588 7.04924 7.39484 8.93332 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.020818 B = 0.002065 C = 0.001934 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1344.674528 B =13558.445673 C =14474.495546 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.001 4.001 3 Si 0.969 3.031 4 H -0.254 1.254 5 H -0.284 1.284 6 H -0.282 1.282 7 C -0.536 4.536 8 H 0.080 0.920 9 C 0.032 3.968 10 C -0.014 4.014 11 C 0.218 3.782 12 N -0.504 5.504 13 C 0.215 3.785 14 C -0.124 4.124 15 C -0.002 4.002 16 C -0.179 4.179 17 C 0.328 3.672 18 O -0.302 6.302 19 C 0.100 3.900 20 C -0.173 4.173 21 C -0.174 4.174 22 C -0.161 4.161 23 N -0.549 5.549 24 C 0.187 3.813 25 N -0.397 5.397 26 O 0.068 5.932 27 H 0.263 0.737 28 H -0.006 1.006 29 H -0.001 1.001 30 H 0.118 0.882 31 H 0.116 0.884 32 H 0.163 0.837 33 H 0.180 0.820 34 H 0.067 0.933 35 H 0.067 0.933 36 H 0.117 0.883 37 H 0.096 0.904 38 H 0.109 0.891 39 H 0.114 0.886 40 H 0.100 0.900 41 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.059 -24.637 -8.824 26.251 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.199 4.199 3 Si 0.794 3.206 4 H -0.177 1.177 5 H -0.210 1.210 6 H -0.208 1.208 7 C -0.574 4.574 8 H 0.098 0.902 9 C -0.006 4.006 10 C -0.053 4.053 11 C -0.001 4.001 12 N -0.237 5.237 13 C -0.055 4.055 14 C -0.129 4.129 15 C -0.029 4.029 16 C -0.199 4.199 17 C 0.148 3.852 18 O -0.208 6.208 19 C 0.025 3.975 20 C -0.191 4.191 21 C -0.211 4.211 22 C -0.198 4.198 23 N -0.272 5.272 24 C 0.029 3.971 25 N -0.108 5.108 26 O 0.012 5.988 27 H 0.072 0.928 28 H 0.013 0.987 29 H 0.017 0.983 30 H 0.137 0.863 31 H 0.135 0.865 32 H 0.181 0.819 33 H 0.197 0.803 34 H 0.085 0.915 35 H 0.085 0.915 36 H 0.135 0.865 37 H 0.114 0.886 38 H 0.127 0.873 39 H 0.132 0.868 40 H 0.118 0.882 41 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges -2.696 -25.429 -9.569 27.303 hybrid contribution 0.086 1.432 0.838 1.661 sum -2.611 -23.997 -8.731 25.669 Atomic orbital electron populations 1.70120 1.08067 1.27817 1.51549 1.25996 0.95664 1.03597 0.94673 0.85331 0.79452 0.78499 0.77349 1.17700 1.21007 1.20821 1.21608 0.94226 0.90931 1.50593 0.90231 1.18969 0.94031 0.91908 0.95725 1.20569 0.96709 0.81423 1.06623 1.29485 0.94017 0.97023 0.79613 1.72006 1.17049 1.05419 1.29260 1.23903 0.98873 0.94960 0.87775 1.18275 1.06492 0.94574 0.93527 1.21603 0.89985 0.89470 1.01820 1.21234 1.05803 1.03055 0.89815 1.20284 0.88858 0.86409 0.89607 1.86202 1.72084 1.42264 1.20286 1.22284 1.00905 0.98300 0.76024 1.22146 1.03393 0.99624 0.93922 1.23209 0.97292 0.97788 1.02824 1.23108 1.02452 1.02168 0.92082 1.67455 1.15025 1.03833 1.40909 1.22563 0.90968 0.94484 0.89120 1.74767 1.16793 1.04326 1.14951 1.85245 1.52415 1.25023 1.36134 0.92832 0.98730 0.98303 0.86337 0.86539 0.81934 0.80302 0.91472 0.91482 0.86462 0.88555 0.87269 0.86792 0.88176 0.81069 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -55.50 13.29 21.45 0.28 -55.22 16 2 C 0.00 -0.08 5.46 84.66 0.46 0.39 16 3 Si 0.97 42.18 29.54 68.60 2.03 44.21 16 4 H -0.25 -10.22 7.11 99.48 0.71 -9.52 16 5 H -0.28 -12.30 7.11 99.48 0.71 -11.60 16 6 H -0.28 -12.15 7.11 99.48 0.71 -11.44 16 7 C -0.54 -27.97 9.11 25.60 0.23 -27.74 16 8 H 0.08 3.80 7.74 -2.91 -0.02 3.78 16 9 C 0.03 1.57 4.96 29.85 0.15 1.72 16 10 C -0.01 -0.53 5.78 29.85 0.17 -0.35 16 11 C 0.22 7.98 7.75 88.35 0.68 8.67 16 12 N -0.50 -18.64 11.27 -302.44 -3.41 -22.04 16 13 C 0.22 7.35 7.81 137.26 1.07 8.42 16 14 C -0.12 -3.52 5.89 -19.94 -0.12 -3.64 16 15 C 0.00 -0.05 9.82 22.65 0.22 0.17 16 16 C -0.18 -3.49 10.03 22.43 0.22 -3.27 16 17 C 0.33 7.55 7.49 84.81 0.64 8.18 16 18 O -0.30 -6.32 10.11 -89.27 -0.90 -7.22 16 19 C 0.10 1.78 5.58 71.98 0.40 2.18 16 20 C -0.17 -2.32 6.05 -10.80 -0.07 -2.39 16 21 C -0.17 -1.88 10.18 30.62 0.31 -1.57 16 22 C -0.16 -1.64 10.25 30.62 0.31 -1.33 16 23 N -0.55 -14.17 9.19 -308.06 -2.83 -17.00 16 24 C 0.19 5.11 10.86 84.93 0.92 6.04 16 25 N -0.40 -13.88 11.93 -59.06 -0.70 -14.59 16 26 O 0.07 2.44 11.29 74.53 0.84 3.28 16 27 H 0.26 14.71 8.31 -92.71 -0.77 13.94 16 28 H -0.01 -0.32 8.14 -2.39 -0.02 -0.34 16 29 H 0.00 -0.08 8.14 -2.39 -0.02 -0.10 16 30 H 0.12 3.68 8.14 -2.39 -0.02 3.67 16 31 H 0.12 3.89 8.14 -2.39 -0.02 3.87 16 32 H 0.16 3.20 7.94 -2.91 -0.02 3.18 16 33 H 0.18 2.34 8.06 -2.91 -0.02 2.32 16 34 H 0.07 1.27 8.10 -2.38 -0.02 1.25 16 35 H 0.07 1.23 7.84 -2.39 -0.02 1.21 16 36 H 0.12 1.53 8.14 -2.39 -0.02 1.51 16 37 H 0.10 1.05 8.03 -2.38 -0.02 1.04 16 38 H 0.11 0.92 8.14 -2.39 -0.02 0.90 16 39 H 0.11 0.86 8.14 -2.38 -0.02 0.84 16 40 H 0.10 1.00 8.14 -2.39 -0.02 0.98 16 41 H 0.17 4.65 7.88 -2.91 -0.02 4.63 16 Total: -1.00 -64.94 364.00 1.97 -62.97 By element: Atomic # 1 Polarization: 9.08 SS G_CDS: 1.05 Total: 10.12 kcal Atomic # 6 Polarization: -10.13 SS G_CDS: 5.62 Total: -4.51 kcal Atomic # 7 Polarization: -102.19 SS G_CDS: -6.66 Total: -108.85 kcal Atomic # 8 Polarization: -3.89 SS G_CDS: -0.06 Total: -3.95 kcal Atomic # 14 Polarization: 42.18 SS G_CDS: 2.03 Total: 44.21 kcal Total: -64.94 1.97 -62.97 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291140806.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.340 kcal (2) G-P(sol) polarization free energy of solvation -64.942 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.399 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.974 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.968 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.373 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds