Wall clock time and date at job start Tue Mar 31 2020 10:56:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86807 * 120.00055 * 2 1 4 4 H 1.48498 * 109.46957 * 269.99632 * 3 2 1 5 5 H 1.48494 * 109.47004 * 29.99758 * 3 2 1 6 6 H 1.48497 * 109.47100 * 149.99913 * 3 2 1 7 7 C 1.37877 * 120.00157 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99890 * 359.97438 * 7 2 1 9 9 C 1.50698 * 120.00235 * 180.02562 * 7 2 1 10 10 C 1.52995 * 109.47352 * 179.97438 * 9 7 2 11 11 C 1.50703 * 109.47493 * 179.97438 * 10 9 7 12 12 N 1.30977 * 126.43946 * 90.00048 * 11 10 9 13 13 C 1.35204 * 105.57506 * 180.02562 * 12 11 10 14 14 C 1.48497 * 126.40705 * 179.97438 * 13 12 11 15 15 C 1.39030 * 119.69222 * 179.97438 * 14 13 12 16 16 C 1.39102 * 118.99977 * 179.97438 * 15 14 13 17 17 O 1.35748 * 120.81023 * 179.97438 * 16 15 14 18 18 C 1.42899 * 116.99933 * 5.62423 * 17 16 15 19 19 C 1.53781 * 113.61356 * 156.45811 * 18 17 16 20 20 C 1.53775 * 87.08130 * 89.11850 * 19 18 17 21 21 C 1.53777 * 113.61535 * 253.95484 * 18 17 16 22 22 C 1.39325 * 118.38097 * 0.24967 * 16 15 14 23 23 C 1.38082 * 119.28448 * 359.50777 * 22 16 15 24 24 N 1.31798 * 120.95014 * 0.50345 * 23 22 16 25 25 N 1.30716 * 107.18331 * 0.24020 * 13 12 11 26 26 O 1.21297 * 110.10338 * 359.57969 * 25 13 12 27 27 H 0.97005 * 120.00070 * 0.02562 * 1 2 3 28 28 H 1.09002 * 109.47674 * 59.99567 * 9 7 2 29 29 H 1.08998 * 109.47112 * 300.00078 * 9 7 2 30 30 H 1.09008 * 109.47064 * 59.99728 * 10 9 7 31 31 H 1.08998 * 109.47278 * 300.00225 * 10 9 7 32 32 H 1.07997 * 120.50230 * 359.95762 * 15 14 13 33 33 H 1.09004 * 112.91024 * 25.20588 * 18 17 16 34 34 H 1.08994 * 113.61655 * 334.56209 * 19 18 17 35 35 H 1.09003 * 113.68839 * 203.68022 * 19 18 17 36 36 H 1.09004 * 113.61722 * 139.98131 * 20 19 18 37 37 H 1.08996 * 113.61310 * 270.88147 * 20 19 18 38 38 H 1.09007 * 113.61340 * 156.33243 * 21 18 17 39 39 H 1.09003 * 113.61947 * 25.43569 * 21 18 17 40 40 H 1.08002 * 120.35981 * 179.74559 * 22 16 15 41 41 H 1.08000 * 119.52662 * 180.27458 * 23 22 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5466 1.4402 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 1.4645 -2.1293 0.0014 9 6 3.5115 -1.1941 0.0011 10 6 4.0215 -2.6365 0.0023 11 6 5.5285 -2.6365 0.0022 12 7 6.3065 -2.6357 1.0559 13 6 7.5699 -2.6356 0.5743 14 6 8.8192 -2.6342 1.3771 15 6 10.0515 -2.6348 0.7334 16 6 11.2125 -2.6329 1.4995 17 8 12.4350 -2.6339 0.9093 18 6 12.4682 -2.5121 -0.5141 19 6 13.7967 -1.9566 -1.0539 20 6 14.2903 -3.4118 -1.1136 21 6 12.8141 -3.8247 -1.2367 22 6 11.0901 -2.6359 2.8874 23 6 9.8312 -2.6302 3.4545 24 7 8.7489 -2.6320 2.7023 25 7 7.4859 -2.6311 -0.7301 26 8 6.3225 -2.6369 -1.0730 27 1 -0.4850 0.8401 -0.0004 28 1 3.8746 -0.6800 0.8911 29 1 3.8752 -0.6804 -0.8888 30 1 3.6585 -3.1510 -0.8875 31 1 3.6578 -3.1498 0.8924 32 1 10.1065 -2.6369 -0.3451 33 1 11.5889 -2.0102 -0.9177 34 1 14.3371 -1.3413 -0.3346 35 1 13.7087 -1.4848 -2.0326 36 1 14.8820 -3.6361 -2.0012 37 1 14.7631 -3.7506 -0.1918 38 1 12.4561 -3.8642 -2.2655 39 1 12.5614 -4.7177 -0.6650 40 1 11.9705 -2.6387 3.5130 41 1 9.7318 -2.6280 4.5299 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000291144014.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:56:14 Heat of formation + Delta-G solvation = 88.409599 kcal Electronic energy + Delta-G solvation = -24723.980386 eV Core-core repulsion = 20994.665529 eV Total energy + Delta-G solvation = -3729.314857 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.137 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -45.33191 -41.18816 -39.60460 -36.95226 -35.73339 -34.67838 -32.80442 -31.57962 -31.53922 -30.31128 -26.36993 -26.25196 -26.15420 -25.25735 -23.73691 -22.86686 -21.83868 -20.66664 -20.17866 -18.59440 -17.86818 -17.36753 -17.03203 -16.56256 -16.28477 -16.13555 -15.68201 -15.17767 -14.90696 -14.43037 -14.19480 -14.10319 -13.99108 -13.66800 -13.39549 -12.96115 -12.77537 -12.40185 -12.23276 -11.97922 -11.89319 -11.57284 -11.37258 -11.09423 -10.90917 -10.85027 -10.77729 -10.67609 -10.21811 -9.89774 -9.83123 -9.78091 -9.36632 -9.29818 -9.04986 -8.62187 -6.12824 -4.13348 0.35247 0.95530 1.50641 2.46042 2.50116 3.06827 3.25979 3.27637 3.35856 3.40326 3.59620 3.87046 3.99999 4.00488 4.28644 4.31575 4.38971 4.41351 4.52004 4.71594 4.82689 4.94865 5.09343 5.13272 5.20904 5.21140 5.31561 5.40882 5.41280 5.45276 5.51444 5.62485 5.75672 5.80269 5.90813 6.02242 6.12300 6.23487 6.43945 6.80644 7.02001 7.15841 7.61895 7.67535 8.31872 8.38904 8.89300 9.47877 10.99706 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.020334 B = 0.002555 C = 0.002477 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1376.698937 B =10955.636686 C =11299.727877 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.073 3.927 3 Si 0.875 3.125 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.265 1.265 7 C -0.525 4.525 8 H 0.079 0.921 9 C -0.008 4.008 10 C -0.019 4.019 11 C 0.210 3.790 12 N -0.459 5.459 13 C 0.203 3.797 14 C 0.246 3.754 15 C -0.227 4.227 16 C 0.171 3.829 17 O -0.284 6.284 18 C 0.046 3.954 19 C -0.134 4.134 20 C -0.136 4.136 21 C -0.159 4.159 22 C -0.197 4.197 23 C 0.141 3.859 24 N -0.468 5.468 25 N -0.379 5.379 26 O 0.081 5.919 27 H 0.265 0.735 28 H 0.027 0.973 29 H 0.019 0.981 30 H 0.099 0.901 31 H 0.109 0.891 32 H 0.149 0.851 33 H 0.090 0.910 34 H 0.080 0.920 35 H 0.101 0.899 36 H 0.072 0.928 37 H 0.085 0.915 38 H 0.097 0.903 39 H 0.077 0.923 40 H 0.147 0.853 41 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 28.653 -6.684 0.038 29.423 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.129 4.129 3 Si 0.702 3.298 4 H -0.201 1.201 5 H -0.211 1.211 6 H -0.190 1.190 7 C -0.563 4.563 8 H 0.097 0.903 9 C -0.047 4.047 10 C -0.058 4.058 11 C -0.010 4.010 12 N -0.191 5.191 13 C -0.067 4.067 14 C 0.109 3.891 15 C -0.250 4.250 16 C 0.118 3.882 17 O -0.196 6.196 18 C -0.010 4.010 19 C -0.171 4.171 20 C -0.173 4.173 21 C -0.196 4.196 22 C -0.218 4.218 23 C -0.017 4.017 24 N -0.181 5.181 25 N -0.087 5.087 26 O 0.019 5.981 27 H 0.075 0.925 28 H 0.045 0.955 29 H 0.037 0.963 30 H 0.117 0.883 31 H 0.127 0.873 32 H 0.166 0.834 33 H 0.108 0.892 34 H 0.099 0.901 35 H 0.119 0.881 36 H 0.091 0.909 37 H 0.104 0.896 38 H 0.116 0.884 39 H 0.096 0.904 40 H 0.165 0.835 41 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges 28.682 -6.581 0.414 29.431 hybrid contribution 0.895 0.982 -0.613 1.464 sum 29.578 -5.598 -0.199 30.103 Atomic orbital electron populations 1.69886 1.06222 1.27138 1.50209 1.24939 0.94718 0.99076 0.94213 0.86840 0.80504 0.83748 0.78661 1.20109 1.21119 1.18991 1.20915 0.88285 0.94967 1.52085 0.90306 1.19637 0.97968 0.89510 0.97571 1.20595 0.76636 1.03138 1.05453 1.29794 0.99613 0.92284 0.79274 1.72198 0.98795 1.20004 1.28068 1.23346 0.92628 1.03350 0.87411 1.17604 0.87059 0.95639 0.88837 1.22061 0.91704 1.09086 1.02108 1.19117 0.84094 0.92597 0.92421 1.86056 1.25181 1.86679 1.21644 1.23571 1.00253 0.98833 0.78370 1.23134 0.94593 0.97714 1.01641 1.22848 0.96175 0.95659 1.02662 1.23455 0.97234 0.97625 1.01314 1.21660 1.00473 1.07686 0.92003 1.22704 0.85920 0.92614 1.00418 1.67587 1.33015 1.12946 1.04547 1.74773 0.98530 1.21022 1.14396 1.85277 1.10921 1.65505 1.36363 0.92483 0.95462 0.96255 0.88286 0.87331 0.83353 0.89178 0.90102 0.88094 0.90936 0.89615 0.88429 0.90437 0.83475 0.81033 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.77 13.96 55.43 0.77 -26.00 16 2 C 0.07 2.06 5.47 -17.82 -0.10 1.96 16 3 Si 0.88 21.35 27.47 -169.99 -4.67 16.68 16 4 H -0.28 -6.58 7.11 56.52 0.40 -6.17 16 5 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 6 H -0.27 -6.37 6.54 56.52 0.37 -6.00 16 7 C -0.52 -14.12 9.66 -34.44 -0.33 -14.46 16 8 H 0.08 2.22 7.99 -52.49 -0.42 1.80 16 9 C -0.01 -0.19 4.02 -27.89 -0.11 -0.30 16 10 C -0.02 -0.35 5.78 -27.88 -0.16 -0.51 16 11 C 0.21 3.83 7.75 -12.99 -0.10 3.73 16 12 N -0.46 -8.94 11.56 -9.89 -0.11 -9.05 16 13 C 0.20 3.65 7.90 -156.13 -1.23 2.42 16 14 C 0.25 3.86 6.75 -82.97 -0.56 3.30 16 15 C -0.23 -2.90 8.70 -38.97 -0.34 -3.24 16 16 C 0.17 1.89 6.72 -38.86 -0.26 1.63 16 17 O -0.28 -2.82 10.08 -18.95 -0.19 -3.01 16 18 C 0.05 0.37 3.79 -25.92 -0.10 0.28 16 19 C -0.13 -0.82 7.91 -25.92 -0.21 -1.02 16 20 C -0.14 -0.80 8.02 -25.92 -0.21 -1.01 16 21 C -0.16 -1.10 7.91 -25.92 -0.21 -1.30 16 22 C -0.20 -1.89 10.07 -39.23 -0.40 -2.29 16 23 C 0.14 1.53 11.17 -17.62 -0.20 1.33 16 24 N -0.47 -7.11 10.29 -9.83 -0.10 -7.22 16 25 N -0.38 -6.56 11.83 30.96 0.37 -6.20 16 26 O 0.08 1.41 11.29 18.05 0.20 1.62 16 27 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 28 H 0.03 0.65 7.20 -51.93 -0.37 0.27 16 29 H 0.02 0.43 7.57 -51.93 -0.39 0.04 16 30 H 0.10 1.60 8.14 -51.92 -0.42 1.18 16 31 H 0.11 1.92 8.14 -51.93 -0.42 1.50 16 32 H 0.15 1.76 5.84 -52.49 -0.31 1.45 16 33 H 0.09 0.75 6.01 -51.93 -0.31 0.44 16 34 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 35 H 0.10 0.47 8.14 -51.93 -0.42 0.05 16 36 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 37 H 0.09 0.54 8.14 -51.93 -0.42 0.11 16 38 H 0.10 0.57 8.14 -51.93 -0.42 0.14 16 39 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 40 H 0.15 0.99 8.06 -52.49 -0.42 0.57 16 41 H 0.17 1.25 8.06 -52.49 -0.42 0.82 16 LS Contribution 353.03 15.07 5.32 5.32 Total: -1.00 -32.25 353.03 -8.12 -40.36 By element: Atomic # 1 Polarization: 2.17 SS G_CDS: -5.20 Total: -3.03 kcal Atomic # 6 Polarization: -4.98 SS G_CDS: -4.51 Total: -9.49 kcal Atomic # 7 Polarization: -49.38 SS G_CDS: 0.92 Total: -48.46 kcal Atomic # 8 Polarization: -1.40 SS G_CDS: 0.01 Total: -1.39 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -4.67 Total: 16.68 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -32.25 -8.12 -40.36 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291144014.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.774 kcal (2) G-P(sol) polarization free energy of solvation -32.246 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 96.528 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.118 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.365 kcal (6) G-S(sol) free energy of system = (1) + (5) 88.410 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds