Wall clock time and date at job start Tue Mar 31 2020 10:56:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86807 * 120.00055 * 2 1 4 4 H 1.48498 * 109.46957 * 269.99632 * 3 2 1 5 5 H 1.48494 * 109.47004 * 29.99758 * 3 2 1 6 6 H 1.48497 * 109.47100 * 149.99913 * 3 2 1 7 7 C 1.37877 * 120.00157 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99890 * 359.97438 * 7 2 1 9 9 C 1.50698 * 120.00235 * 180.02562 * 7 2 1 10 10 C 1.52995 * 109.47352 * 179.97438 * 9 7 2 11 11 C 1.50703 * 109.47493 * 179.97438 * 10 9 7 12 12 N 1.30977 * 126.43946 * 90.00048 * 11 10 9 13 13 C 1.35204 * 105.57506 * 180.02562 * 12 11 10 14 14 C 1.48497 * 126.40705 * 179.97438 * 13 12 11 15 15 C 1.39030 * 119.69222 * 179.97438 * 14 13 12 16 16 C 1.39102 * 118.99977 * 179.97438 * 15 14 13 17 17 O 1.35748 * 120.81023 * 179.97438 * 16 15 14 18 18 C 1.42899 * 116.99933 * 5.62423 * 17 16 15 19 19 C 1.53781 * 113.61356 * 156.45811 * 18 17 16 20 20 C 1.53775 * 87.08130 * 89.11850 * 19 18 17 21 21 C 1.53777 * 113.61535 * 253.95484 * 18 17 16 22 22 C 1.39325 * 118.38097 * 0.24967 * 16 15 14 23 23 C 1.38082 * 119.28448 * 359.50777 * 22 16 15 24 24 N 1.31798 * 120.95014 * 0.50345 * 23 22 16 25 25 N 1.30716 * 107.18331 * 0.24020 * 13 12 11 26 26 O 1.21297 * 110.10338 * 359.57969 * 25 13 12 27 27 H 0.97005 * 120.00070 * 0.02562 * 1 2 3 28 28 H 1.09002 * 109.47674 * 59.99567 * 9 7 2 29 29 H 1.08998 * 109.47112 * 300.00078 * 9 7 2 30 30 H 1.09008 * 109.47064 * 59.99728 * 10 9 7 31 31 H 1.08998 * 109.47278 * 300.00225 * 10 9 7 32 32 H 1.07997 * 120.50230 * 359.95762 * 15 14 13 33 33 H 1.09004 * 112.91024 * 25.20588 * 18 17 16 34 34 H 1.08994 * 113.61655 * 334.56209 * 19 18 17 35 35 H 1.09003 * 113.68839 * 203.68022 * 19 18 17 36 36 H 1.09004 * 113.61722 * 139.98131 * 20 19 18 37 37 H 1.08996 * 113.61310 * 270.88147 * 20 19 18 38 38 H 1.09007 * 113.61340 * 156.33243 * 21 18 17 39 39 H 1.09003 * 113.61947 * 25.43569 * 21 18 17 40 40 H 1.08002 * 120.35981 * 179.74559 * 22 16 15 41 41 H 1.08000 * 119.52662 * 180.27458 * 23 22 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5466 1.4402 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 1.4645 -2.1293 0.0014 9 6 3.5115 -1.1941 0.0011 10 6 4.0215 -2.6365 0.0023 11 6 5.5285 -2.6365 0.0022 12 7 6.3065 -2.6357 1.0559 13 6 7.5699 -2.6356 0.5743 14 6 8.8192 -2.6342 1.3771 15 6 10.0515 -2.6348 0.7334 16 6 11.2125 -2.6329 1.4995 17 8 12.4350 -2.6339 0.9093 18 6 12.4682 -2.5121 -0.5141 19 6 13.7967 -1.9566 -1.0539 20 6 14.2903 -3.4118 -1.1136 21 6 12.8141 -3.8247 -1.2367 22 6 11.0901 -2.6359 2.8874 23 6 9.8312 -2.6302 3.4545 24 7 8.7489 -2.6320 2.7023 25 7 7.4859 -2.6311 -0.7301 26 8 6.3225 -2.6369 -1.0730 27 1 -0.4850 0.8401 -0.0004 28 1 3.8746 -0.6800 0.8911 29 1 3.8752 -0.6804 -0.8888 30 1 3.6585 -3.1510 -0.8875 31 1 3.6578 -3.1498 0.8924 32 1 10.1065 -2.6369 -0.3451 33 1 11.5889 -2.0102 -0.9177 34 1 14.3371 -1.3413 -0.3346 35 1 13.7087 -1.4848 -2.0326 36 1 14.8820 -3.6361 -2.0012 37 1 14.7631 -3.7506 -0.1918 38 1 12.4561 -3.8642 -2.2655 39 1 12.5614 -4.7177 -0.6650 40 1 11.9705 -2.6387 3.5130 41 1 9.7318 -2.6280 4.5299 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000291144014.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:56:13 Heat of formation + Delta-G solvation = 67.551482 kcal Electronic energy + Delta-G solvation = -24724.884861 eV Core-core repulsion = 20994.665529 eV Total energy + Delta-G solvation = -3730.219333 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.137 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -46.70710 -41.99105 -40.36071 -37.66879 -37.11449 -36.26581 -34.57068 -32.96793 -32.43416 -31.72882 -28.06495 -26.97815 -26.74656 -26.33011 -24.83270 -23.91849 -23.35425 -22.13545 -20.90320 -19.58004 -19.24003 -18.94782 -18.39594 -17.64853 -17.08332 -16.89342 -16.57372 -16.37158 -15.93291 -15.79537 -15.57832 -15.16164 -14.95289 -14.85809 -14.68815 -14.43592 -13.79513 -13.66411 -13.42423 -13.09558 -12.94115 -12.91464 -12.63655 -12.46232 -12.22436 -11.97504 -11.86080 -11.78739 -11.46151 -11.44915 -11.33224 -11.21162 -10.78764 -10.76675 -10.27530 -9.96751 -8.29103 -6.33175 -0.69872 0.05615 0.19618 1.21430 1.35008 1.38345 1.48008 1.67754 1.76205 2.08641 2.35010 2.63472 2.66563 3.06472 3.37900 3.45092 3.46861 3.55704 3.75085 3.81030 3.83702 3.93659 4.13905 4.16611 4.37287 4.38518 4.43358 4.45272 4.61656 4.69125 4.70826 4.78393 4.81592 4.86792 4.94056 4.98616 5.06475 5.23020 5.24112 5.34984 5.39220 5.57878 6.05177 6.23725 6.73531 6.74258 6.95596 7.31181 8.86487 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.020334 B = 0.002555 C = 0.002477 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1376.698937 B =10955.636686 C =11299.727877 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.942 5.942 2 C 0.015 3.985 3 Si 0.937 3.063 4 H -0.264 1.264 5 H -0.283 1.283 6 H -0.259 1.259 7 C -0.525 4.525 8 H 0.055 0.945 9 C -0.005 4.005 10 C -0.008 4.008 11 C 0.211 3.789 12 N -0.483 5.483 13 C 0.200 3.800 14 C 0.212 3.788 15 C -0.224 4.224 16 C 0.168 3.832 17 O -0.285 6.285 18 C 0.030 3.970 19 C -0.127 4.127 20 C -0.131 4.131 21 C -0.159 4.159 22 C -0.178 4.178 23 C 0.139 3.861 24 N -0.504 5.504 25 N -0.380 5.380 26 O 0.082 5.918 27 H 0.267 0.733 28 H 0.017 0.983 29 H 0.026 0.974 30 H 0.121 0.879 31 H 0.113 0.887 32 H 0.151 0.849 33 H 0.085 0.915 34 H 0.081 0.919 35 H 0.117 0.883 36 H 0.087 0.913 37 H 0.081 0.919 38 H 0.108 0.892 39 H 0.066 0.934 40 H 0.183 0.817 41 H 0.207 0.793 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 31.757 -6.341 0.187 32.384 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.183 4.183 3 Si 0.761 3.239 4 H -0.189 1.189 5 H -0.209 1.209 6 H -0.184 1.184 7 C -0.563 4.563 8 H 0.073 0.927 9 C -0.043 4.043 10 C -0.047 4.047 11 C -0.009 4.009 12 N -0.215 5.215 13 C -0.071 4.071 14 C 0.075 3.925 15 C -0.247 4.247 16 C 0.114 3.886 17 O -0.196 6.196 18 C -0.026 4.026 19 C -0.164 4.164 20 C -0.169 4.169 21 C -0.197 4.197 22 C -0.199 4.199 23 C -0.018 4.018 24 N -0.218 5.218 25 N -0.088 5.088 26 O 0.022 5.978 27 H 0.076 0.924 28 H 0.035 0.965 29 H 0.045 0.955 30 H 0.139 0.861 31 H 0.131 0.869 32 H 0.168 0.832 33 H 0.103 0.897 34 H 0.099 0.901 35 H 0.135 0.865 36 H 0.105 0.895 37 H 0.100 0.900 38 H 0.126 0.874 39 H 0.085 0.915 40 H 0.200 0.800 41 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges 31.803 -6.248 0.543 32.416 hybrid contribution 0.037 0.792 -0.614 1.003 sum 31.840 -5.456 -0.072 32.304 Atomic orbital electron populations 1.70015 1.07891 1.28135 1.52160 1.25780 0.95458 1.02800 0.94271 0.85861 0.79271 0.79545 0.79225 1.18885 1.20876 1.18352 1.21232 0.90516 0.93991 1.50597 0.92713 1.19493 0.95194 0.92392 0.97241 1.20388 0.76803 1.00628 1.06898 1.29575 0.99369 0.92474 0.79435 1.72180 0.99806 1.20701 1.28854 1.23842 0.93086 1.02453 0.87683 1.17640 0.86870 0.98650 0.89347 1.22064 0.91485 1.08762 1.02374 1.19293 0.83955 0.92262 0.93079 1.86065 1.24345 1.86478 1.22736 1.23864 1.01216 1.00005 0.77557 1.23184 0.93033 0.97921 1.02251 1.22833 0.95568 0.95306 1.03166 1.23496 0.98112 0.96502 1.01551 1.22055 1.01279 1.04854 0.91700 1.23316 0.85385 0.91460 1.01642 1.67514 1.35354 1.14265 1.04674 1.74746 0.98271 1.21467 1.14337 1.85261 1.10991 1.65539 1.36037 0.92351 0.96479 0.95533 0.86059 0.86910 0.83172 0.89749 0.90072 0.86497 0.89463 0.90027 0.87374 0.91503 0.79981 0.77645 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.18 13.96 21.45 0.30 -56.88 16 2 C 0.01 0.85 5.47 84.66 0.46 1.31 16 3 Si 0.94 43.88 27.47 68.60 1.88 45.76 16 4 H -0.26 -11.81 7.11 99.48 0.71 -11.10 16 5 H -0.28 -13.07 7.11 99.48 0.71 -12.36 16 6 H -0.26 -11.79 6.54 99.48 0.65 -11.14 16 7 C -0.53 -28.49 9.66 25.60 0.25 -28.25 16 8 H 0.05 3.16 7.99 -2.91 -0.02 3.13 16 9 C 0.00 -0.21 4.02 29.85 0.12 -0.08 16 10 C -0.01 -0.30 5.78 29.85 0.17 -0.13 16 11 C 0.21 7.61 7.75 88.36 0.68 8.30 16 12 N -0.48 -18.80 11.56 -302.58 -3.50 -22.30 16 13 C 0.20 7.19 7.90 137.34 1.09 8.27 16 14 C 0.21 6.59 6.75 41.94 0.28 6.87 16 15 C -0.22 -5.58 8.70 22.67 0.20 -5.38 16 16 C 0.17 3.42 6.72 22.74 0.15 3.57 16 17 O -0.29 -5.12 10.08 -90.73 -0.91 -6.04 16 18 C 0.03 0.44 3.79 31.12 0.12 0.55 16 19 C -0.13 -1.28 7.91 31.12 0.25 -1.03 16 20 C -0.13 -1.27 8.02 31.12 0.25 -1.02 16 21 C -0.16 -1.96 7.91 31.12 0.25 -1.72 16 22 C -0.18 -2.92 10.07 22.49 0.23 -2.69 16 23 C 0.14 2.70 11.17 84.66 0.95 3.65 16 24 N -0.50 -14.96 10.29 -185.02 -1.90 -16.87 16 25 N -0.38 -13.05 11.83 -59.21 -0.70 -13.75 16 26 O 0.08 2.83 11.29 74.67 0.84 3.67 16 27 H 0.27 15.22 8.31 -92.70 -0.77 14.45 16 28 H 0.02 0.80 7.20 -2.39 -0.02 0.78 16 29 H 0.03 1.15 7.57 -2.39 -0.02 1.13 16 30 H 0.12 3.79 8.14 -2.38 -0.02 3.77 16 31 H 0.11 3.96 8.14 -2.39 -0.02 3.94 16 32 H 0.15 3.54 5.84 -2.91 -0.02 3.52 16 33 H 0.08 1.33 6.01 -2.39 -0.01 1.32 16 34 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 35 H 0.12 0.80 8.14 -2.39 -0.02 0.78 16 36 H 0.09 0.60 8.14 -2.38 -0.02 0.58 16 37 H 0.08 0.86 8.14 -2.39 -0.02 0.85 16 38 H 0.11 1.08 8.14 -2.38 -0.02 1.06 16 39 H 0.07 0.96 8.14 -2.39 -0.02 0.95 16 40 H 0.18 1.67 8.06 -2.91 -0.02 1.65 16 41 H 0.21 2.34 8.06 -2.91 -0.02 2.31 16 Total: -1.00 -70.21 353.03 2.45 -67.76 By element: Atomic # 1 Polarization: 5.42 SS G_CDS: 1.00 Total: 6.43 kcal Atomic # 6 Polarization: -13.21 SS G_CDS: 5.44 Total: -7.77 kcal Atomic # 7 Polarization: -104.01 SS G_CDS: -5.80 Total: -109.81 kcal Atomic # 8 Polarization: -2.30 SS G_CDS: -0.07 Total: -2.37 kcal Atomic # 14 Polarization: 43.88 SS G_CDS: 1.88 Total: 45.76 kcal Total: -70.21 2.45 -67.76 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291144014.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.313 kcal (2) G-P(sol) polarization free energy of solvation -70.212 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.102 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.450 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.762 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.551 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds