Wall clock time and date at job start Tue Mar 31 2020 11:26:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.30269 * 126.28358 * 2 1 4 4 N 1.28666 * 109.38459 * 179.97438 * 3 2 1 5 5 C 1.30275 * 109.37956 * 0.02562 * 4 3 2 6 6 C 1.50703 * 126.28133 * 180.02562 * 5 4 3 7 7 C 1.50695 * 109.47154 * 89.97048 * 6 5 4 8 8 O 1.21285 * 120.00500 * 0.02562 * 7 6 5 9 9 N 1.34786 * 119.99773 * 179.97438 * 7 6 5 10 10 C 1.46497 * 119.99805 * 355.26572 * 9 7 6 11 11 C 1.50701 * 109.46900 * 90.00387 * 10 9 7 12 12 H 1.07999 * 119.99963 * 359.97438 * 11 10 9 13 13 C 1.37880 * 119.99588 * 180.02562 * 11 10 9 14 14 N 1.31515 * 120.00317 * 359.97438 * 13 11 10 15 15 Si 1.86804 * 119.99796 * 179.97438 * 13 11 10 16 16 H 1.48499 * 109.47079 * 89.99448 * 15 13 11 17 17 H 1.48500 * 109.46834 * 209.99532 * 15 13 11 18 18 H 1.48497 * 109.46967 * 329.99424 * 15 13 11 19 19 C 1.39923 * 119.99596 * 175.26665 * 9 7 6 20 20 C 1.38867 * 120.07259 * 291.84843 * 19 9 7 21 21 C 1.38115 * 119.92980 * 179.72441 * 20 19 9 22 22 C 1.38278 * 120.06959 * 0.57679 * 21 20 19 23 23 C 1.50698 * 119.93230 * 179.69773 * 22 21 20 24 24 C 1.38284 * 120.14155 * 359.67865 * 22 21 20 25 25 C 1.38113 * 120.06969 * 0.04450 * 24 22 21 26 26 O 1.34363 * 107.43452 * 359.75248 * 5 4 3 27 27 H 1.09003 * 109.46993 * 90.02473 * 1 2 3 28 28 H 1.08998 * 109.47141 * 330.02299 * 1 2 3 29 29 H 1.09000 * 109.46973 * 210.01668 * 1 2 3 30 30 H 1.09004 * 109.47040 * 209.97292 * 6 5 4 31 31 H 1.09002 * 109.47183 * 329.96740 * 6 5 4 32 32 H 1.09007 * 109.46777 * 210.00162 * 10 9 7 33 33 H 1.08994 * 109.47154 * 329.99994 * 10 9 7 34 34 H 0.96993 * 119.99968 * 179.97438 * 14 13 11 35 35 H 1.07999 * 120.03617 * 359.97438 * 20 19 9 36 36 H 1.08007 * 119.96561 * 180.25295 * 21 20 19 37 37 H 1.08998 * 109.47323 * 269.98302 * 23 22 21 38 38 H 1.09004 * 109.47012 * 29.97840 * 23 22 21 39 39 H 1.08999 * 109.47093 * 149.97645 * 23 22 21 40 40 H 1.07996 * 119.96658 * 180.02562 * 24 22 21 41 41 H 1.07998 * 120.03694 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2779 1.0501 0.0000 4 7 3.5090 0.6761 0.0005 5 6 3.5654 -0.6254 0.0004 6 6 4.8177 -1.4638 0.0014 7 6 5.2342 -1.7429 1.4225 8 8 4.5784 -1.3047 2.3439 9 7 6.3349 -2.4805 1.6696 10 6 7.0674 -3.0973 0.5609 11 6 8.1246 -2.1445 0.0656 12 1 8.2392 -1.1762 0.5299 13 6 8.9450 -2.5086 -0.9810 14 7 8.8052 -3.6876 -1.5468 15 14 10.2551 -1.3273 -1.5956 16 1 11.5188 -1.5585 -0.8506 17 1 10.4861 -1.5547 -3.0447 18 1 9.8019 0.0702 -1.3798 19 6 6.7779 -2.6570 2.9851 20 6 7.2910 -1.5806 3.6968 21 6 7.7222 -1.7569 4.9971 22 6 7.6543 -3.0061 5.5862 23 6 8.1319 -3.1964 7.0027 24 6 7.1488 -4.0811 4.8783 25 6 6.7107 -3.9102 3.5797 26 8 2.3021 -1.0831 0.0052 27 1 -0.3633 -0.0004 -1.0277 28 1 -0.3633 0.8902 0.5135 29 1 -0.3633 -0.8898 0.5141 30 1 4.6248 -2.4056 -0.5124 31 1 5.6150 -0.9265 -0.5121 32 1 7.5398 -4.0175 0.9050 33 1 6.3752 -3.3254 -0.2495 34 1 9.3820 -3.9436 -2.2833 35 1 7.3492 -0.6058 3.2355 36 1 8.1176 -0.9193 5.5526 37 1 9.1902 -3.4573 6.9974 38 1 7.9886 -2.2717 7.5618 39 1 7.5624 -3.9976 7.4736 40 1 7.0967 -5.0554 5.3413 41 1 6.3164 -4.7502 3.0272 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000291552119.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:26:15 Heat of formation + Delta-G solvation = 26.342408 kcal Electronic energy + Delta-G solvation = -25729.251111 eV Core-core repulsion = 21997.244818 eV Total energy + Delta-G solvation = -3732.006292 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.137 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -44.00568 -40.04392 -38.29970 -35.94072 -35.38009 -33.49770 -32.88864 -31.71011 -30.60161 -30.49383 -27.64233 -27.28051 -25.74930 -23.38829 -22.84962 -22.36886 -22.18818 -21.21872 -19.11732 -17.51844 -17.01049 -16.72513 -16.68372 -15.96480 -15.31123 -15.14132 -14.84647 -14.60393 -14.45738 -14.06871 -13.71382 -13.51128 -13.37141 -13.09966 -12.89422 -12.81992 -12.56343 -12.20638 -12.15645 -11.91876 -11.79800 -11.64532 -11.52518 -11.33606 -11.08578 -10.87920 -10.76289 -10.73736 -10.30116 -9.93396 -9.66075 -9.19147 -8.67609 -8.56426 -8.55553 -7.72140 -6.29683 -4.38138 1.31397 1.65163 1.78854 2.37833 2.58441 3.00883 3.19431 3.27009 3.31125 3.57667 4.00330 4.10289 4.27040 4.52643 4.91254 5.02694 5.06108 5.11196 5.12457 5.13465 5.29077 5.34287 5.41624 5.53433 5.55709 5.69111 5.76079 5.78628 5.82032 5.84787 5.92299 6.02358 6.08188 6.37931 6.54535 6.72247 6.86018 6.89064 7.02269 7.16484 7.50474 7.65156 7.87644 7.97273 8.51157 8.58200 8.74132 9.30888 10.77127 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.008108 B = 0.005253 C = 0.003529 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3452.479742 B = 5328.561480 C = 7933.006135 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 C 0.150 3.850 3 N -0.290 5.290 4 N -0.279 5.279 5 C 0.200 3.800 6 C -0.043 4.043 7 C 0.528 3.472 8 O -0.549 6.549 9 N -0.554 5.554 10 C 0.235 3.765 11 C -0.544 4.544 12 H 0.065 0.935 13 C 0.069 3.931 14 N -0.889 5.889 15 Si 0.897 3.103 16 H -0.278 1.278 17 H -0.284 1.284 18 H -0.270 1.270 19 C 0.169 3.831 20 C -0.101 4.101 21 C -0.113 4.113 22 C -0.103 4.103 23 C -0.108 4.108 24 C -0.114 4.114 25 C -0.118 4.118 26 O -0.222 6.222 27 H 0.096 0.904 28 H 0.103 0.897 29 H 0.090 0.910 30 H 0.128 0.872 31 H 0.155 0.845 32 H 0.044 0.956 33 H 0.043 0.957 34 H 0.267 0.733 35 H 0.121 0.879 36 H 0.119 0.881 37 H 0.066 0.934 38 H 0.062 0.938 39 H 0.062 0.938 40 H 0.120 0.880 41 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.158 -0.465 6.647 11.326 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.061 4.061 3 N -0.138 5.138 4 N -0.125 5.125 5 C -0.012 4.012 6 C -0.084 4.084 7 C 0.316 3.684 8 O -0.428 6.428 9 N -0.282 5.282 10 C 0.117 3.883 11 C -0.582 4.582 12 H 0.083 0.917 13 C -0.135 4.135 14 N -0.527 5.527 15 Si 0.724 3.276 16 H -0.204 1.204 17 H -0.210 1.210 18 H -0.195 1.195 19 C 0.078 3.922 20 C -0.120 4.120 21 C -0.131 4.131 22 C -0.103 4.103 23 C -0.165 4.165 24 C -0.132 4.132 25 C -0.138 4.138 26 O -0.102 6.102 27 H 0.114 0.886 28 H 0.122 0.878 29 H 0.109 0.891 30 H 0.146 0.854 31 H 0.173 0.827 32 H 0.062 0.938 33 H 0.061 0.939 34 H 0.077 0.923 35 H 0.139 0.861 36 H 0.137 0.863 37 H 0.085 0.915 38 H 0.081 0.919 39 H 0.081 0.919 40 H 0.138 0.862 41 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -9.059 0.867 6.930 11.438 hybrid contribution 0.640 -0.723 -0.628 1.152 sum -8.418 0.144 6.302 10.517 Atomic orbital electron populations 1.20279 0.80511 1.05479 1.04878 1.27871 0.97713 0.79925 1.00621 1.74329 0.96241 1.25803 1.17380 1.74376 1.11812 1.09140 1.17153 1.27252 0.84557 0.91305 0.98054 1.20229 0.89477 1.00734 0.97911 1.19913 0.80634 0.78093 0.89780 1.90704 1.53933 1.51989 1.46174 1.45818 1.26075 1.50006 1.06271 1.19685 0.91764 0.94311 0.82590 1.21434 1.17265 1.02427 1.17118 0.91710 1.24913 0.97215 0.95352 0.95972 1.69906 1.39106 1.19621 1.24035 0.86495 0.81766 0.81338 0.78003 1.20407 1.20957 1.19482 1.17494 0.96625 0.93377 0.84726 1.21229 0.97317 0.98939 0.94538 1.20818 1.00876 0.96677 0.94750 1.19817 1.00440 0.93589 0.96427 1.20722 1.01035 1.02090 0.92651 1.20768 1.00140 0.98204 0.94109 1.21166 1.00780 0.96834 0.95007 1.84748 1.17615 1.38242 1.69549 0.88581 0.87793 0.89074 0.85407 0.82706 0.93801 0.93885 0.92314 0.86114 0.86254 0.91492 0.91913 0.91922 0.86199 0.85961 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -0.44 10.51 36.00 0.38 -0.07 16 2 C 0.15 2.23 8.48 -12.94 -0.11 2.12 16 3 N -0.29 -5.25 12.22 32.55 0.40 -4.85 16 4 N -0.28 -5.58 12.22 32.55 0.40 -5.18 16 5 C 0.20 3.70 6.97 -12.94 -0.09 3.61 16 6 C -0.04 -0.76 4.99 -29.04 -0.14 -0.91 16 7 C 0.53 10.84 7.52 -10.98 -0.08 10.75 16 8 O -0.55 -12.65 15.80 5.55 0.09 -12.57 16 9 N -0.55 -11.45 2.50 -114.74 -0.29 -11.74 16 10 C 0.23 5.22 4.88 -5.20 -0.03 5.19 16 11 C -0.54 -13.40 9.16 -34.44 -0.32 -13.72 16 12 H 0.06 1.64 7.81 -52.49 -0.41 1.22 16 13 C 0.07 1.75 5.46 -17.82 -0.10 1.65 16 14 N -0.89 -23.32 13.29 55.43 0.74 -22.58 16 15 Si 0.90 19.99 29.54 -169.99 -5.02 14.97 16 16 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 17 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 18 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 19 C 0.17 3.36 4.74 -83.70 -0.40 2.96 16 20 C -0.10 -1.92 9.56 -39.39 -0.38 -2.29 16 21 C -0.11 -1.80 9.69 -39.61 -0.38 -2.19 16 22 C -0.10 -1.50 5.88 -104.59 -0.62 -2.12 16 23 C -0.11 -1.17 10.01 36.00 0.36 -0.81 16 24 C -0.11 -1.72 9.69 -39.61 -0.38 -2.10 16 25 C -0.12 -2.08 9.69 -39.39 -0.38 -2.46 16 26 O -0.22 -3.74 10.87 5.38 0.06 -3.68 16 27 H 0.10 0.59 8.14 -51.93 -0.42 0.16 16 28 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 29 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.13 1.95 7.26 -51.93 -0.38 1.57 16 31 H 0.16 2.76 7.92 -51.93 -0.41 2.35 16 32 H 0.04 1.04 7.86 -51.92 -0.41 0.63 16 33 H 0.04 0.93 6.47 -51.93 -0.34 0.60 16 34 H 0.27 6.71 8.31 -40.82 -0.34 6.37 16 35 H 0.12 2.36 8.06 -52.49 -0.42 1.93 16 36 H 0.12 1.61 8.06 -52.48 -0.42 1.18 16 37 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 38 H 0.06 0.61 8.08 -51.93 -0.42 0.19 16 39 H 0.06 0.59 8.08 -51.93 -0.42 0.17 16 40 H 0.12 1.47 8.06 -52.49 -0.42 1.04 16 41 H 0.12 2.01 8.06 -52.49 -0.42 1.58 16 LS Contribution 361.61 15.07 5.45 5.45 Total: -1.00 -31.99 361.61 -6.14 -38.14 By element: Atomic # 1 Polarization: 7.71 SS G_CDS: -5.30 Total: 2.41 kcal Atomic # 6 Polarization: 2.29 SS G_CDS: -2.67 Total: -0.37 kcal Atomic # 7 Polarization: -45.60 SS G_CDS: 1.24 Total: -44.35 kcal Atomic # 8 Polarization: -16.39 SS G_CDS: 0.15 Total: -16.25 kcal Atomic # 14 Polarization: 19.99 SS G_CDS: -5.02 Total: 14.97 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -31.99 -6.14 -38.14 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291552119.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.482 kcal (2) G-P(sol) polarization free energy of solvation -31.995 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.487 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.145 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.139 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.342 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds