Wall clock time and date at job start Tue Mar 31 2020 11:26:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.30269 * 126.28358 * 2 1 4 4 N 1.28666 * 109.38459 * 179.97438 * 3 2 1 5 5 C 1.30275 * 109.37956 * 0.02562 * 4 3 2 6 6 C 1.50703 * 126.28133 * 180.02562 * 5 4 3 7 7 C 1.50695 * 109.47154 * 89.97048 * 6 5 4 8 8 O 1.21285 * 120.00500 * 0.02562 * 7 6 5 9 9 N 1.34786 * 119.99773 * 179.97438 * 7 6 5 10 10 C 1.46497 * 119.99805 * 355.26572 * 9 7 6 11 11 C 1.50701 * 109.46900 * 90.00387 * 10 9 7 12 12 H 1.07999 * 119.99963 * 359.97438 * 11 10 9 13 13 C 1.37880 * 119.99588 * 180.02562 * 11 10 9 14 14 N 1.31515 * 120.00317 * 359.97438 * 13 11 10 15 15 Si 1.86804 * 119.99796 * 179.97438 * 13 11 10 16 16 H 1.48499 * 109.47079 * 89.99448 * 15 13 11 17 17 H 1.48500 * 109.46834 * 209.99532 * 15 13 11 18 18 H 1.48497 * 109.46967 * 329.99424 * 15 13 11 19 19 C 1.39923 * 119.99596 * 175.26665 * 9 7 6 20 20 C 1.38867 * 120.07259 * 291.84843 * 19 9 7 21 21 C 1.38115 * 119.92980 * 179.72441 * 20 19 9 22 22 C 1.38278 * 120.06959 * 0.57679 * 21 20 19 23 23 C 1.50698 * 119.93230 * 179.69773 * 22 21 20 24 24 C 1.38284 * 120.14155 * 359.67865 * 22 21 20 25 25 C 1.38113 * 120.06969 * 0.04450 * 24 22 21 26 26 O 1.34363 * 107.43452 * 359.75248 * 5 4 3 27 27 H 1.09003 * 109.46993 * 90.02473 * 1 2 3 28 28 H 1.08998 * 109.47141 * 330.02299 * 1 2 3 29 29 H 1.09000 * 109.46973 * 210.01668 * 1 2 3 30 30 H 1.09004 * 109.47040 * 209.97292 * 6 5 4 31 31 H 1.09002 * 109.47183 * 329.96740 * 6 5 4 32 32 H 1.09007 * 109.46777 * 210.00162 * 10 9 7 33 33 H 1.08994 * 109.47154 * 329.99994 * 10 9 7 34 34 H 0.96993 * 119.99968 * 179.97438 * 14 13 11 35 35 H 1.07999 * 120.03617 * 359.97438 * 20 19 9 36 36 H 1.08007 * 119.96561 * 180.25295 * 21 20 19 37 37 H 1.08998 * 109.47323 * 269.98302 * 23 22 21 38 38 H 1.09004 * 109.47012 * 29.97840 * 23 22 21 39 39 H 1.08999 * 109.47093 * 149.97645 * 23 22 21 40 40 H 1.07996 * 119.96658 * 180.02562 * 24 22 21 41 41 H 1.07998 * 120.03694 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2779 1.0501 0.0000 4 7 3.5090 0.6761 0.0005 5 6 3.5654 -0.6254 0.0004 6 6 4.8177 -1.4638 0.0014 7 6 5.2342 -1.7429 1.4225 8 8 4.5784 -1.3047 2.3439 9 7 6.3349 -2.4805 1.6696 10 6 7.0674 -3.0973 0.5609 11 6 8.1246 -2.1445 0.0656 12 1 8.2392 -1.1762 0.5299 13 6 8.9450 -2.5086 -0.9810 14 7 8.8052 -3.6876 -1.5468 15 14 10.2551 -1.3273 -1.5956 16 1 11.5188 -1.5585 -0.8506 17 1 10.4861 -1.5547 -3.0447 18 1 9.8019 0.0702 -1.3798 19 6 6.7779 -2.6570 2.9851 20 6 7.2910 -1.5806 3.6968 21 6 7.7222 -1.7569 4.9971 22 6 7.6543 -3.0061 5.5862 23 6 8.1319 -3.1964 7.0027 24 6 7.1488 -4.0811 4.8783 25 6 6.7107 -3.9102 3.5797 26 8 2.3021 -1.0831 0.0052 27 1 -0.3633 -0.0004 -1.0277 28 1 -0.3633 0.8902 0.5135 29 1 -0.3633 -0.8898 0.5141 30 1 4.6248 -2.4056 -0.5124 31 1 5.6150 -0.9265 -0.5121 32 1 7.5398 -4.0175 0.9050 33 1 6.3752 -3.3254 -0.2495 34 1 9.3820 -3.9436 -2.2833 35 1 7.3492 -0.6058 3.2355 36 1 8.1176 -0.9193 5.5526 37 1 9.1902 -3.4573 6.9974 38 1 7.9886 -2.2717 7.5618 39 1 7.5624 -3.9976 7.4736 40 1 7.0967 -5.0554 5.3413 41 1 6.3164 -4.7502 3.0272 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000291552119.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:26:14 Heat of formation + Delta-G solvation = 4.234374 kcal Electronic energy + Delta-G solvation = -25730.209787 eV Core-core repulsion = 21997.244818 eV Total energy + Delta-G solvation = -3732.964969 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.137 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -45.32858 -41.57030 -39.68601 -37.28608 -37.00821 -34.88367 -34.58575 -33.00815 -31.90439 -31.64659 -29.36549 -28.51762 -26.99869 -25.15007 -24.23710 -23.58217 -23.56429 -22.54294 -20.59128 -18.93394 -18.76095 -18.31900 -18.06179 -17.55926 -16.81448 -16.45342 -16.30236 -16.02244 -15.86263 -15.42122 -14.99553 -14.55857 -14.48419 -14.39241 -14.32149 -13.97068 -13.60288 -13.57205 -13.50147 -13.47019 -13.10978 -12.99902 -12.96781 -12.80685 -12.63658 -12.48565 -12.12154 -12.06994 -12.05332 -11.73366 -11.25677 -10.65117 -10.52906 -10.10006 -9.87569 -9.17982 -8.24029 -6.37761 0.02217 0.32651 0.46917 1.11719 1.25093 1.39725 1.40761 1.45292 1.53459 2.07887 2.40138 2.76588 2.80256 3.07725 3.36389 3.48870 3.77925 3.93938 4.04141 4.07091 4.08049 4.32632 4.40786 4.43806 4.49274 4.50255 4.55899 4.57089 4.71228 4.82761 4.90486 4.91634 5.03910 5.08478 5.13809 5.19984 5.38750 5.52373 5.66328 5.67215 5.73865 5.98471 6.10711 6.31864 6.70919 7.04613 7.17585 7.34207 8.81676 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.008108 B = 0.005253 C = 0.003529 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3452.479742 B = 5328.561480 C = 7933.006135 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 C 0.169 3.831 3 N -0.329 5.329 4 N -0.310 5.310 5 C 0.188 3.812 6 C -0.035 4.035 7 C 0.526 3.474 8 O -0.579 6.579 9 N -0.552 5.552 10 C 0.249 3.751 11 C -0.549 4.549 12 H 0.051 0.949 13 C 0.032 3.968 14 N -0.913 5.913 15 Si 0.949 3.051 16 H -0.278 1.278 17 H -0.277 1.277 18 H -0.272 1.272 19 C 0.127 3.873 20 C -0.127 4.127 21 C -0.116 4.116 22 C -0.096 4.096 23 C -0.106 4.106 24 C -0.110 4.110 25 C -0.132 4.132 26 O -0.227 6.227 27 H 0.126 0.874 28 H 0.120 0.880 29 H 0.113 0.887 30 H 0.152 0.848 31 H 0.150 0.850 32 H 0.028 0.972 33 H 0.049 0.951 34 H 0.270 0.730 35 H 0.100 0.900 36 H 0.143 0.857 37 H 0.081 0.919 38 H 0.075 0.925 39 H 0.081 0.919 40 H 0.155 0.845 41 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.754 -1.218 7.864 12.588 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.042 4.042 3 N -0.175 5.175 4 N -0.156 5.156 5 C -0.024 4.024 6 C -0.075 4.075 7 C 0.315 3.685 8 O -0.460 6.460 9 N -0.278 5.278 10 C 0.130 3.870 11 C -0.587 4.587 12 H 0.070 0.930 13 C -0.169 4.169 14 N -0.552 5.552 15 Si 0.775 3.225 16 H -0.204 1.204 17 H -0.203 1.203 18 H -0.197 1.197 19 C 0.037 3.963 20 C -0.146 4.146 21 C -0.135 4.135 22 C -0.096 4.096 23 C -0.162 4.162 24 C -0.129 4.129 25 C -0.151 4.151 26 O -0.106 6.106 27 H 0.144 0.856 28 H 0.139 0.861 29 H 0.131 0.869 30 H 0.169 0.831 31 H 0.168 0.832 32 H 0.046 0.954 33 H 0.067 0.933 34 H 0.079 0.921 35 H 0.118 0.882 36 H 0.161 0.839 37 H 0.099 0.901 38 H 0.094 0.906 39 H 0.100 0.900 40 H 0.173 0.827 41 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -9.652 0.127 8.153 12.635 hybrid contribution 0.747 -0.502 -0.895 1.269 sum -8.905 -0.375 7.258 11.495 Atomic orbital electron populations 1.20767 0.75731 1.07342 1.07314 1.29239 0.99667 0.78613 0.96681 1.74258 0.95990 1.27203 1.20043 1.74289 1.13305 1.10043 1.17940 1.27187 0.85289 0.91055 0.98884 1.20156 0.89403 1.01714 0.96258 1.20302 0.80223 0.77470 0.90548 1.90664 1.54803 1.53174 1.47358 1.45737 1.25788 1.49720 1.06550 1.19390 0.91398 0.93132 0.83092 1.21568 1.17951 1.02201 1.17028 0.93049 1.25495 0.98761 0.96533 0.96160 1.69968 1.39972 1.20708 1.24532 0.85680 0.79585 0.79510 0.77727 1.20354 1.20260 1.19712 1.17869 0.98850 0.94815 0.84762 1.21270 0.99160 0.98020 0.96199 1.21146 1.00223 0.98458 0.93653 1.20330 0.98497 0.92552 0.98244 1.20806 1.01949 1.03598 0.89862 1.21209 0.98611 1.00023 0.93016 1.21369 1.01354 0.96018 0.96360 1.84764 1.17194 1.38905 1.69767 0.85571 0.86126 0.86860 0.83061 0.83220 0.95406 0.93314 0.92108 0.88158 0.83879 0.90084 0.90644 0.90008 0.82714 0.85521 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -0.74 10.51 71.24 0.75 0.01 16 2 C 0.17 4.86 8.48 88.34 0.75 5.61 16 3 N -0.33 -12.00 12.22 -165.51 -2.02 -14.03 16 4 N -0.31 -12.79 12.22 -165.50 -2.02 -14.81 16 5 C 0.19 7.14 6.97 88.34 0.62 7.76 16 6 C -0.03 -1.28 4.99 29.10 0.15 -1.14 16 7 C 0.53 22.46 7.52 87.65 0.66 23.12 16 8 O -0.58 -27.76 15.80 -3.05 -0.05 -27.81 16 9 N -0.55 -23.71 2.50 -635.31 -1.59 -25.30 16 10 C 0.25 11.41 4.88 85.63 0.42 11.83 16 11 C -0.55 -27.74 9.16 25.60 0.23 -27.51 16 12 H 0.05 2.69 7.81 -2.91 -0.02 2.67 16 13 C 0.03 1.63 5.46 84.66 0.46 2.09 16 14 N -0.91 -48.14 13.29 21.45 0.28 -47.85 16 15 Si 0.95 41.27 29.54 68.60 2.03 43.30 16 16 H -0.28 -12.00 7.11 99.48 0.71 -11.29 16 17 H -0.28 -11.71 7.11 99.48 0.71 -11.00 16 18 H -0.27 -11.84 7.11 99.48 0.71 -11.14 16 19 C 0.13 5.24 4.74 38.15 0.18 5.42 16 20 C -0.13 -5.01 9.56 22.39 0.21 -4.79 16 21 C -0.12 -3.65 9.69 22.25 0.22 -3.44 16 22 C -0.10 -2.60 5.88 -19.84 -0.12 -2.71 16 23 C -0.11 -1.88 10.01 71.24 0.71 -1.16 16 24 C -0.11 -3.13 9.69 22.25 0.22 -2.91 16 25 C -0.13 -4.64 9.69 22.39 0.22 -4.42 16 26 O -0.23 -7.56 10.87 -3.67 -0.04 -7.60 16 27 H 0.13 1.07 8.14 -2.39 -0.02 1.05 16 28 H 0.12 1.32 8.14 -2.39 -0.02 1.30 16 29 H 0.11 1.12 8.14 -2.39 -0.02 1.10 16 30 H 0.15 4.69 7.26 -2.39 -0.02 4.67 16 31 H 0.15 5.62 7.92 -2.39 -0.02 5.60 16 32 H 0.03 1.36 7.86 -2.38 -0.02 1.34 16 33 H 0.05 2.16 6.47 -2.39 -0.02 2.15 16 34 H 0.27 13.52 8.31 -92.71 -0.77 12.75 16 35 H 0.10 4.22 8.06 -2.91 -0.02 4.19 16 36 H 0.14 3.66 8.06 -2.91 -0.02 3.64 16 37 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 38 H 0.07 1.18 8.08 -2.39 -0.02 1.16 16 39 H 0.08 1.18 8.08 -2.39 -0.02 1.16 16 40 H 0.16 3.24 8.06 -2.91 -0.02 3.21 16 41 H 0.13 4.20 8.06 -2.91 -0.02 4.17 16 Total: -1.00 -71.64 361.61 3.30 -68.34 By element: Atomic # 1 Polarization: 16.97 SS G_CDS: 1.05 Total: 18.01 kcal Atomic # 6 Polarization: 2.08 SS G_CDS: 5.67 Total: 7.76 kcal Atomic # 7 Polarization: -96.64 SS G_CDS: -5.35 Total: -101.99 kcal Atomic # 8 Polarization: -35.33 SS G_CDS: -0.09 Total: -35.42 kcal Atomic # 14 Polarization: 41.27 SS G_CDS: 2.03 Total: 43.30 kcal Total: -71.64 3.30 -68.34 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291552119.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.573 kcal (2) G-P(sol) polarization free energy of solvation -71.643 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.929 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.305 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.338 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.234 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds