Wall clock time and date at job start Tue Mar 31 2020 11:22:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38142 * 120.03574 * 2 1 4 4 C 1.38253 * 120.06452 * 180.02562 * 3 2 1 5 5 C 1.38294 * 120.13009 * 359.97438 * 4 3 2 6 6 C 1.38099 * 120.07012 * 359.79443 * 5 4 3 7 7 C 1.38806 * 120.03079 * 180.02562 * 2 1 3 8 8 N 1.40250 * 120.06072 * 359.94989 * 7 2 1 9 9 C 1.36119 * 125.93732 * 132.60809 * 8 7 2 10 10 C 1.35374 * 106.04651 * 180.02562 * 9 8 7 11 11 C 1.50700 * 126.72831 * 180.25559 * 10 9 8 12 12 O 1.45198 * 109.47121 * 359.71281 * 11 10 9 13 13 C 1.34235 * 116.99859 * 179.97438 * 12 11 10 14 14 O 1.20827 * 119.99808 * 359.97438 * 13 12 11 15 15 C 1.50693 * 119.99936 * 180.02562 * 13 12 11 16 16 C 1.53005 * 109.47218 * 179.97438 * 15 13 12 17 17 C 1.50703 * 109.47259 * 179.97438 * 16 15 13 18 18 H 1.07999 * 119.99822 * 0.02562 * 17 16 15 19 19 C 1.37876 * 120.00073 * 180.02562 * 17 16 15 20 20 N 1.31513 * 119.99599 * 359.97438 * 19 17 16 21 21 Si 1.86799 * 120.00077 * 180.02562 * 19 17 16 22 22 H 1.48496 * 109.47394 * 89.99604 * 21 19 17 23 23 H 1.48493 * 109.46905 * 210.00146 * 21 19 17 24 24 H 1.48507 * 109.46787 * 329.99822 * 21 19 17 25 25 N 1.33776 * 106.54119 * 359.97438 * 10 9 8 26 26 N 1.28605 * 109.05955 * 359.97438 * 25 10 9 27 27 H 1.09003 * 109.46972 * 264.62578 * 1 2 3 28 28 H 1.09005 * 109.46770 * 24.62412 * 1 2 3 29 29 H 1.09002 * 109.47624 * 144.62327 * 1 2 3 30 30 H 1.08000 * 119.96879 * 0.02562 * 3 2 1 31 31 H 1.08001 * 119.93443 * 180.02562 * 4 3 2 32 32 H 1.08004 * 119.96262 * 180.02562 * 5 4 3 33 33 H 1.07998 * 120.04041 * 180.25070 * 6 5 4 34 34 H 1.07990 * 126.97639 * 0.06132 * 9 8 7 35 35 H 1.09005 * 109.47085 * 119.71457 * 11 10 9 36 36 H 1.08995 * 109.47223 * 239.71181 * 11 10 9 37 37 H 1.08999 * 109.47182 * 299.99935 * 15 13 12 38 38 H 1.09001 * 109.47271 * 59.99896 * 15 13 12 39 39 H 1.08999 * 109.47039 * 300.00081 * 16 15 13 40 40 H 1.08995 * 109.46650 * 59.99998 * 16 15 13 41 41 H 0.97003 * 119.99378 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1985 1.1959 0.0000 4 6 3.5810 1.1966 -0.0005 5 6 4.2758 0.0009 -0.0005 6 6 3.5901 -1.1978 0.0043 7 6 2.2017 -1.2017 -0.0005 8 7 1.5024 -2.4174 0.0000 9 6 1.7502 -3.4819 -0.8114 10 6 0.8451 -4.4297 -0.4721 11 6 0.7070 -5.8023 -1.0788 12 8 1.7067 -5.9751 -2.1175 13 6 1.7192 -7.1529 -2.7613 14 8 0.9216 -8.0112 -2.4662 15 6 2.7288 -7.4052 -3.8512 16 6 2.5285 -8.8129 -4.4161 17 6 3.5378 -9.0650 -5.5065 18 1 4.2511 -8.2980 -5.7699 19 6 3.5506 -10.2747 -6.1679 20 7 2.6824 -11.2088 -5.8467 21 14 4.8021 -10.5874 -7.5189 22 1 6.0299 -11.1788 -6.9292 23 1 4.2296 -11.5271 -8.5160 24 1 5.1416 -9.3045 -8.1857 25 7 0.1013 -3.9113 0.5116 26 7 0.5152 -2.7210 0.7684 27 1 -0.3633 -0.0963 1.0232 28 1 -0.3633 0.9343 -0.4282 29 1 -0.3634 -0.8379 -0.5950 30 1 1.6586 2.1313 0.0004 31 1 4.1195 2.1328 -0.0001 32 1 5.3558 0.0046 -0.0005 33 1 4.1332 -2.1313 0.0084 34 1 2.5141 -3.5557 -1.5711 35 1 0.8516 -6.5573 -0.3060 36 1 -0.2880 -5.9103 -1.5105 37 1 2.5958 -6.6718 -4.6465 38 1 3.7352 -7.3183 -3.4415 39 1 2.6619 -9.5460 -3.6206 40 1 1.5223 -8.9002 -4.8257 41 1 2.6912 -12.0598 -6.3123 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000291706326.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:22:11 Heat of formation + Delta-G solvation = 15.325568 kcal Electronic energy + Delta-G solvation = -24390.151740 eV Core-core repulsion = 20657.667721 eV Total energy + Delta-G solvation = -3732.484018 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.137 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -44.65807 -41.50430 -40.49358 -37.84838 -35.83446 -35.62537 -33.91663 -33.36799 -32.84801 -31.13202 -28.91450 -28.11800 -27.51745 -25.20973 -24.17507 -23.32434 -22.70623 -21.79581 -21.33416 -19.36746 -18.97740 -18.11680 -18.07020 -17.54592 -17.21734 -16.76894 -16.46081 -16.30271 -15.99676 -15.38790 -15.27957 -14.94510 -14.76928 -14.24726 -14.24236 -14.08847 -13.76382 -13.51335 -13.34336 -13.16344 -12.91084 -12.81656 -12.53774 -12.48651 -12.41923 -12.20085 -12.06237 -11.95043 -11.73035 -11.57595 -11.44337 -11.25392 -10.55486 -10.41328 -9.95802 -9.74402 -8.17735 -6.31140 -0.31673 0.22843 0.62489 1.15377 1.16208 1.24404 1.42055 1.47427 1.48167 1.58682 2.44611 2.54641 3.12059 3.16505 3.58624 3.63452 3.70636 3.85797 3.94734 4.00717 4.14184 4.14965 4.28232 4.33848 4.35908 4.50576 4.50899 4.54608 4.61690 4.62049 4.72638 4.85422 4.95231 5.09119 5.21903 5.32349 5.34071 5.41398 5.50684 5.53635 5.59081 5.83771 5.89814 6.15375 6.77021 6.88561 7.18688 7.39147 8.94875 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.019242 B = 0.002257 C = 0.002068 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1454.766362 B =12404.622226 C =13535.855587 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.072 4.072 3 C -0.109 4.109 4 C -0.090 4.090 5 C -0.108 4.108 6 C -0.105 4.105 7 C 0.072 3.928 8 N -0.237 5.237 9 C -0.008 4.008 10 C -0.034 4.034 11 C 0.158 3.842 12 O -0.348 6.348 13 C 0.471 3.529 14 O -0.541 6.541 15 C -0.090 4.090 16 C 0.035 3.965 17 C -0.541 4.541 18 H 0.080 0.920 19 C -0.006 4.006 20 N -0.937 5.937 21 Si 0.973 3.027 22 H -0.272 1.272 23 H -0.288 1.288 24 H -0.254 1.254 25 N -0.281 5.281 26 N -0.087 5.087 27 H 0.077 0.923 28 H 0.095 0.905 29 H 0.039 0.961 30 H 0.160 0.840 31 H 0.166 0.834 32 H 0.164 0.836 33 H 0.141 0.859 34 H 0.225 0.775 35 H 0.090 0.910 36 H 0.090 0.910 37 H 0.120 0.880 38 H 0.121 0.879 39 H -0.010 1.010 40 H -0.010 1.010 41 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.231 30.888 11.786 33.330 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.074 4.074 3 C -0.127 4.127 4 C -0.108 4.108 5 C -0.127 4.127 6 C -0.125 4.125 7 C -0.017 4.017 8 N -0.026 5.026 9 C -0.156 4.156 10 C -0.171 4.171 11 C 0.082 3.918 12 O -0.264 6.264 13 C 0.316 3.684 14 O -0.430 6.430 15 C -0.128 4.128 16 C -0.002 4.002 17 C -0.579 4.579 18 H 0.098 0.902 19 C -0.204 4.204 20 N -0.577 5.577 21 Si 0.797 3.203 22 H -0.198 1.198 23 H -0.214 1.214 24 H -0.178 1.178 25 N -0.150 5.150 26 N -0.065 5.065 27 H 0.095 0.905 28 H 0.114 0.886 29 H 0.058 0.942 30 H 0.178 0.822 31 H 0.183 0.817 32 H 0.182 0.818 33 H 0.159 0.841 34 H 0.241 0.759 35 H 0.108 0.892 36 H 0.108 0.892 37 H 0.138 0.862 38 H 0.139 0.861 39 H 0.009 0.991 40 H 0.008 0.992 41 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 2.962 30.936 13.002 33.688 hybrid contribution 0.483 -1.474 -1.174 1.945 sum 3.445 29.462 11.828 31.934 Atomic orbital electron populations 1.20801 0.90233 1.03024 1.02909 1.20058 0.97073 0.91729 0.98502 1.21361 0.95023 0.96959 0.99384 1.21818 0.93928 0.99829 0.95238 1.21453 1.01970 0.90654 0.98594 1.21319 0.90387 1.01403 0.99435 1.17854 0.91557 0.81247 1.11007 1.44727 1.22345 1.12162 1.23319 1.23995 1.04655 0.86436 1.00562 1.21445 0.98136 0.97955 0.99518 1.20574 0.91669 0.90587 0.88928 1.86387 1.54555 1.37629 1.47821 1.24569 0.83995 0.78336 0.81477 1.90665 1.40778 1.46344 1.65169 1.21534 0.96993 1.00384 0.93843 1.18830 0.95938 0.90580 0.94851 1.21650 1.16946 1.00575 1.18703 0.90199 1.26102 0.98060 0.96009 1.00190 1.70165 1.37862 1.06278 1.43347 0.85326 0.78328 0.78580 0.78059 1.19783 1.21431 1.17819 1.74975 1.23442 1.01964 1.14590 1.78366 1.02681 1.09684 1.15735 0.90456 0.88606 0.94173 0.82204 0.81659 0.81845 0.84088 0.75891 0.89157 0.89234 0.86167 0.86071 0.99145 0.99173 0.92843 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.76 8.86 71.24 0.63 -1.13 16 2 C -0.07 -1.08 5.89 -19.75 -0.12 -1.19 16 3 C -0.11 -0.94 9.67 22.25 0.22 -0.72 16 4 C -0.09 -0.52 10.04 22.29 0.22 -0.30 16 5 C -0.11 -0.81 10.04 22.25 0.22 -0.59 16 6 C -0.11 -1.35 9.64 22.38 0.22 -1.13 16 7 C 0.07 1.29 6.18 38.07 0.24 1.53 16 8 N -0.24 -5.50 2.96 -187.04 -0.55 -6.05 16 9 C -0.01 -0.18 10.63 83.37 0.89 0.71 16 10 C -0.03 -0.92 7.22 41.60 0.30 -0.62 16 11 C 0.16 4.51 6.09 71.24 0.43 4.95 16 12 O -0.35 -10.32 9.60 -51.47 -0.49 -10.82 16 13 C 0.47 17.55 7.96 71.23 0.57 18.12 16 14 O -0.54 -24.64 15.73 21.96 0.35 -24.30 16 15 C -0.09 -3.39 5.75 29.85 0.17 -3.22 16 16 C 0.04 1.86 4.26 29.85 0.13 1.98 16 17 C -0.54 -29.39 9.11 25.60 0.23 -29.16 16 18 H 0.08 3.91 7.74 -2.91 -0.02 3.89 16 19 C -0.01 -0.33 5.46 84.65 0.46 0.13 16 20 N -0.94 -57.80 13.29 21.45 0.28 -57.51 16 21 Si 0.97 42.99 29.54 68.60 2.03 45.02 16 22 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 23 H -0.29 -12.74 7.11 99.48 0.71 -12.03 16 24 H -0.25 -10.39 7.11 99.48 0.71 -9.68 16 25 N -0.28 -8.61 12.39 -48.58 -0.60 -9.21 16 26 N -0.09 -2.44 11.43 37.02 0.42 -2.02 16 27 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 28 H 0.10 0.96 8.05 -2.38 -0.02 0.95 16 29 H 0.04 0.82 7.20 -2.39 -0.02 0.81 16 30 H 0.16 0.54 8.06 -2.91 -0.02 0.52 16 31 H 0.17 -0.08 8.06 -2.91 -0.02 -0.10 16 32 H 0.16 0.34 8.06 -2.91 -0.02 0.31 16 33 H 0.14 1.57 8.03 -2.91 -0.02 1.55 16 34 H 0.22 3.75 7.93 -2.92 -0.02 3.73 16 35 H 0.09 2.60 8.13 -2.38 -0.02 2.58 16 36 H 0.09 2.59 8.13 -2.39 -0.02 2.57 16 37 H 0.12 3.92 8.14 -2.39 -0.02 3.90 16 38 H 0.12 3.92 8.14 -2.39 -0.02 3.90 16 39 H -0.01 -0.59 8.10 -2.39 -0.02 -0.60 16 40 H -0.01 -0.60 8.10 -2.39 -0.02 -0.62 16 41 H 0.26 15.25 8.31 -92.71 -0.77 14.48 16 Total: -1.00 -76.34 361.40 7.28 -69.06 By element: Atomic # 1 Polarization: 5.44 SS G_CDS: 1.04 Total: 6.48 kcal Atomic # 6 Polarization: -15.46 SS G_CDS: 4.81 Total: -10.65 kcal Atomic # 7 Polarization: -74.35 SS G_CDS: -0.45 Total: -74.79 kcal Atomic # 8 Polarization: -34.97 SS G_CDS: -0.15 Total: -35.11 kcal Atomic # 14 Polarization: 42.99 SS G_CDS: 2.03 Total: 45.02 kcal Total: -76.34 7.28 -69.06 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291706326.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.388 kcal (2) G-P(sol) polarization free energy of solvation -76.341 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.048 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.278 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.063 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.326 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds