Wall clock time and date at job start Tue Mar 31 2020 11:06:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30996 * 1 3 3 C 1.50695 * 120.00327 * 2 1 4 4 N 1.46494 * 109.47625 * 124.99678 * 3 2 1 5 5 C 1.46501 * 120.00325 * 264.63408 * 4 3 2 6 6 C 1.50702 * 109.46838 * 269.99593 * 5 4 3 7 7 H 1.08000 * 120.00021 * 0.02562 * 6 5 4 8 8 C 1.37881 * 120.00025 * 179.97438 * 6 5 4 9 9 N 1.31518 * 119.99682 * 0.02562 * 8 6 5 10 10 Si 1.86798 * 120.00217 * 180.02562 * 8 6 5 11 11 H 1.48496 * 109.47003 * 90.00353 * 10 8 6 12 12 H 1.48500 * 109.47246 * 210.00622 * 10 8 6 13 13 H 1.48498 * 109.46974 * 330.00189 * 10 8 6 14 14 C 1.34783 * 119.99991 * 84.62558 * 4 3 2 15 15 O 1.21531 * 119.99713 * 185.65150 * 14 4 3 16 16 C 1.47998 * 119.99693 * 5.65922 * 14 4 3 17 17 C 1.39482 * 121.11009 * 57.03535 * 16 14 4 18 18 C 1.38542 * 119.20770 * 180.23474 * 17 16 14 19 19 C 1.50700 * 119.17609 * 179.73041 * 18 17 16 20 20 N 1.31592 * 121.65658 * 359.45767 * 18 17 16 21 21 C 1.32419 * 122.02635 * 0.27484 * 20 18 17 22 22 O 1.34840 * 133.10561 * 180.02562 * 21 20 18 23 23 N 1.41323 * 109.42391 * 179.97438 * 22 21 20 24 24 C 1.29811 * 109.73962 * 359.97438 * 23 22 21 25 25 C 1.50693 * 126.33743 * 179.97438 * 24 23 22 26 26 C 1.40559 * 120.04161 * 359.97438 * 21 20 18 27 27 H 1.08002 * 120.00183 * 180.02562 * 1 2 3 28 28 H 1.08003 * 119.99980 * 0.02562 * 1 2 3 29 29 H 1.08003 * 119.99980 * 179.97438 * 2 1 3 30 30 H 1.09010 * 109.46924 * 4.99540 * 3 2 1 31 31 H 1.08998 * 109.47268 * 244.99967 * 3 2 1 32 32 H 1.08997 * 109.47177 * 29.99287 * 5 4 3 33 33 H 1.08993 * 109.47412 * 149.99517 * 5 4 3 34 34 H 0.97003 * 119.99679 * 179.97438 * 9 8 6 35 35 H 1.08005 * 120.39758 * 359.97438 * 17 16 14 36 36 H 1.08996 * 109.47160 * 269.73877 * 19 18 17 37 37 H 1.09000 * 109.46794 * 29.73052 * 19 18 17 38 38 H 1.08997 * 109.47080 * 149.73053 * 19 18 17 39 39 H 1.09005 * 109.46910 * 264.01234 * 25 24 23 40 40 H 1.09001 * 109.47483 * 24.01346 * 25 24 23 41 41 H 1.09004 * 109.47076 * 144.01410 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 7 2.9937 1.3319 1.1314 5 6 2.5991 1.9710 2.3892 6 6 2.9908 3.4259 2.3579 7 1 3.4839 3.8337 1.4879 8 6 2.7187 4.2365 3.4395 9 7 2.1177 3.7399 4.4987 10 14 3.2035 6.0401 3.4005 11 1 2.0876 6.8405 2.8354 12 1 3.4962 6.5039 4.7804 13 1 4.4122 6.2095 2.5546 14 6 4.2126 0.7685 1.0152 15 8 4.9448 0.6994 1.9828 16 6 4.6594 0.2343 -0.2907 17 6 4.7024 1.0455 -1.4246 18 6 5.1225 0.5032 -2.6282 19 6 5.1628 1.3786 -3.8542 20 7 5.4922 -0.7559 -2.7268 21 6 5.4790 -1.5752 -1.6866 22 8 5.8026 -2.8752 -1.5335 23 7 5.5984 -3.2549 -0.1876 24 6 5.1624 -2.2393 0.4932 25 6 4.8219 -2.2282 1.9611 26 6 5.0617 -1.1082 -0.4283 27 1 -0.5400 -0.9353 0.0004 28 1 -0.5400 0.9353 -0.0004 29 1 1.8500 -0.9353 0.0004 30 1 1.3585 2.1316 0.0895 31 1 2.6213 1.4025 -0.9314 32 1 1.5197 1.8880 2.5159 33 1 3.1015 1.4773 3.2209 34 1 1.9265 4.3101 5.2598 35 1 4.4077 2.0829 -1.3659 36 1 4.2053 1.3231 -4.3719 37 1 5.3564 2.4096 -3.5581 38 1 5.9558 1.0365 -4.5191 39 1 3.7508 -2.3868 2.0868 40 1 5.3688 -3.0238 2.4671 41 1 5.0996 -1.2659 2.3912 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000292597685.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:06:56 Heat of formation + Delta-G solvation = 50.513892 kcal Electronic energy + Delta-G solvation = -26617.804057 eV Core-core repulsion = 22886.845918 eV Total energy + Delta-G solvation = -3730.958138 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.137 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -43.33799 -41.14414 -39.90229 -37.42158 -36.04248 -35.13465 -33.93363 -33.54215 -33.14923 -29.94903 -29.69403 -28.61684 -27.22299 -26.06748 -24.70554 -23.68375 -22.13865 -21.24934 -20.11072 -19.35896 -18.76326 -18.50477 -18.20099 -17.75715 -17.33695 -16.54813 -16.16719 -15.88884 -15.67772 -15.19853 -15.15016 -14.65355 -14.59264 -14.46715 -14.38248 -14.16360 -13.86358 -13.75807 -13.38441 -13.14198 -13.06609 -13.01751 -12.90383 -12.58882 -12.56563 -12.30787 -12.21822 -12.11290 -11.68357 -11.43899 -10.82335 -10.62962 -10.61124 -10.40587 -10.06607 -9.58129 -8.20357 -6.34298 -0.98958 -0.35694 0.63874 0.82815 1.20592 1.41511 1.44139 1.50432 1.55225 2.03248 2.24863 2.41484 2.49377 2.81688 3.09512 3.13396 3.28351 3.42114 3.76062 3.94248 3.99207 4.08578 4.15872 4.29006 4.34630 4.39882 4.49144 4.57203 4.76398 4.82571 4.88205 4.89738 4.97682 4.98702 5.04775 5.24150 5.33908 5.45887 5.64349 5.73372 5.77266 5.85087 6.04937 6.39749 6.47887 6.73420 7.07125 7.37064 8.87099 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.013868 B = 0.004501 C = 0.004241 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2018.509772 B = 6218.969369 C = 6601.344856 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.192 4.192 3 C 0.124 3.876 4 N -0.576 5.576 5 C 0.263 3.737 6 C -0.543 4.543 7 H 0.062 0.938 8 C 0.013 3.987 9 N -0.926 5.926 10 Si 0.964 3.036 11 H -0.265 1.265 12 H -0.287 1.287 13 H -0.269 1.269 14 C 0.548 3.452 15 O -0.559 6.559 16 C 0.014 3.986 17 C -0.171 4.171 18 C 0.216 3.784 19 C -0.106 4.106 20 N -0.487 5.487 21 C 0.286 3.714 22 O -0.100 6.100 23 N -0.293 5.293 24 C 0.160 3.840 25 C -0.103 4.103 26 C -0.240 4.240 27 H 0.113 0.887 28 H 0.109 0.891 29 H 0.094 0.906 30 H 0.096 0.904 31 H 0.103 0.897 32 H 0.028 0.972 33 H 0.008 0.992 34 H 0.266 0.734 35 H 0.181 0.819 36 H 0.114 0.886 37 H 0.111 0.889 38 H 0.091 0.909 39 H 0.105 0.895 40 H 0.108 0.892 41 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.419 -4.796 -15.318 16.057 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.211 4.211 3 C 0.002 3.998 4 N -0.304 5.304 5 C 0.142 3.858 6 C -0.581 4.581 7 H 0.080 0.920 8 C -0.187 4.187 9 N -0.566 5.566 10 Si 0.788 3.212 11 H -0.190 1.190 12 H -0.213 1.213 13 H -0.194 1.194 14 C 0.334 3.666 15 O -0.439 6.439 16 C 0.001 3.999 17 C -0.191 4.191 18 C 0.073 3.927 19 C -0.162 4.162 20 N -0.209 5.209 21 C 0.104 3.896 22 O -0.102 6.102 23 N -0.042 5.042 24 C -0.020 4.020 25 C -0.161 4.161 26 C -0.247 4.247 27 H 0.131 0.869 28 H 0.128 0.872 29 H 0.112 0.888 30 H 0.114 0.886 31 H 0.121 0.879 32 H 0.046 0.954 33 H 0.026 0.974 34 H 0.075 0.925 35 H 0.198 0.802 36 H 0.132 0.868 37 H 0.130 0.870 38 H 0.110 0.890 39 H 0.123 0.877 40 H 0.127 0.873 41 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 0.529 -6.477 -15.462 16.772 hybrid contribution -0.166 1.488 1.489 2.111 sum 0.364 -4.990 -13.974 14.842 Atomic orbital electron populations 1.24073 0.95151 1.03227 0.97056 1.23205 0.97009 0.97802 1.03088 1.21060 0.92847 0.96645 0.89205 1.48125 1.13174 1.53284 1.15847 1.18889 0.94904 0.91514 0.80452 1.21688 1.39283 0.94809 1.02335 0.91997 1.25774 0.94818 1.03358 0.94710 1.70047 1.42414 1.37814 1.06290 0.85470 0.78959 0.79410 0.77330 1.18960 1.21285 1.19398 1.18312 0.82485 0.78472 0.87283 1.90706 1.54970 1.58539 1.39691 1.20007 0.93748 0.91480 0.94646 1.22441 1.03211 1.02720 0.90755 1.22107 0.86556 0.87590 0.96458 1.21108 1.05881 0.97687 0.91569 1.66496 1.20488 1.04540 1.29396 1.20467 0.92503 0.86737 0.89931 1.89169 1.75437 1.20174 1.25435 1.80033 1.21274 1.17867 0.85073 1.24793 0.89880 0.88789 0.98568 1.20896 1.04348 1.06687 0.84135 1.21267 1.12985 0.95955 0.94459 0.86861 0.87236 0.88786 0.88590 0.87905 0.95386 0.97370 0.92475 0.80189 0.86767 0.87048 0.88987 0.87655 0.87342 0.88495 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.49 14.32 67.78 0.97 -2.52 16 2 C -0.19 -5.02 9.80 25.65 0.25 -4.77 16 3 C 0.12 3.55 5.63 85.63 0.48 4.04 16 4 N -0.58 -22.11 2.45 -833.76 -2.05 -24.16 16 5 C 0.26 12.85 5.18 85.63 0.44 13.29 16 6 C -0.54 -28.34 9.39 25.60 0.24 -28.10 16 7 H 0.06 3.12 7.81 -2.91 -0.02 3.10 16 8 C 0.01 0.69 5.46 84.65 0.46 1.15 16 9 N -0.93 -52.67 13.29 21.45 0.28 -52.38 16 10 Si 0.96 41.72 29.54 68.60 2.03 43.74 16 11 H -0.26 -10.77 7.11 99.48 0.71 -10.06 16 12 H -0.29 -12.47 7.11 99.48 0.71 -11.76 16 13 H -0.27 -11.39 7.11 99.48 0.71 -10.68 16 14 C 0.55 21.34 6.55 86.83 0.57 21.91 16 15 O -0.56 -26.19 13.96 -3.81 -0.05 -26.24 16 16 C 0.01 0.45 4.94 -19.76 -0.10 0.35 16 17 C -0.17 -4.10 7.39 22.64 0.17 -3.94 16 18 C 0.22 4.58 6.77 42.67 0.29 4.87 16 19 C -0.11 -1.15 10.15 71.24 0.72 -0.43 16 20 N -0.49 -13.43 10.25 -296.40 -3.04 -16.47 16 21 C 0.29 9.15 8.64 85.17 0.74 9.89 16 22 O -0.10 -3.39 12.06 29.74 0.36 -3.03 16 23 N -0.29 -9.61 12.81 -43.67 -0.56 -10.17 16 24 C 0.16 5.10 7.46 44.94 0.34 5.43 16 25 C -0.10 -2.94 9.93 71.23 0.71 -2.23 16 26 C -0.24 -7.83 6.20 -20.00 -0.12 -7.95 16 27 H 0.11 2.11 8.06 -2.91 -0.02 2.09 16 28 H 0.11 2.26 7.84 -2.91 -0.02 2.24 16 29 H 0.09 2.58 8.06 -2.91 -0.02 2.55 16 30 H 0.10 2.74 7.68 -2.38 -0.02 2.72 16 31 H 0.10 2.39 4.78 -2.39 -0.01 2.38 16 32 H 0.03 1.41 8.07 -2.39 -0.02 1.39 16 33 H 0.01 0.46 7.35 -2.39 -0.02 0.45 16 34 H 0.27 14.32 8.31 -92.71 -0.77 13.55 16 35 H 0.18 3.48 7.54 -2.91 -0.02 3.46 16 36 H 0.11 0.82 8.14 -2.39 -0.02 0.80 16 37 H 0.11 0.77 8.07 -2.39 -0.02 0.75 16 38 H 0.09 0.97 8.14 -2.39 -0.02 0.96 16 39 H 0.11 2.69 8.14 -2.38 -0.02 2.67 16 40 H 0.11 2.53 8.14 -2.39 -0.02 2.51 16 41 H 0.10 3.35 5.12 -2.38 -0.01 3.34 16 Total: -1.00 -69.47 354.74 4.19 -65.28 By element: Atomic # 1 Polarization: 11.38 SS G_CDS: 1.06 Total: 12.44 kcal Atomic # 6 Polarization: 4.83 SS G_CDS: 6.16 Total: 10.98 kcal Atomic # 7 Polarization: -97.82 SS G_CDS: -5.36 Total: -103.18 kcal Atomic # 8 Polarization: -29.57 SS G_CDS: 0.31 Total: -29.27 kcal Atomic # 14 Polarization: 41.72 SS G_CDS: 2.03 Total: 43.74 kcal Total: -69.47 4.19 -65.28 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292597685.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.791 kcal (2) G-P(sol) polarization free energy of solvation -69.466 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.325 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.188 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.277 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.514 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds