Wall clock time and date at job start Tue Mar 31 2020 11:00:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.29809 * 126.33425 * 2 1 4 4 O 1.41323 * 109.72510 * 180.02562 * 3 2 1 5 5 C 1.34836 * 109.42290 * 0.02562 * 4 3 2 6 6 N 1.32449 * 133.09342 * 180.02562 * 5 4 3 7 7 C 1.31562 * 122.02453 * 179.97438 * 6 5 4 8 8 C 1.50703 * 119.17359 * 180.02562 * 7 6 5 9 9 C 1.53001 * 117.49849 * 163.75054 * 8 7 6 10 10 C 1.52998 * 117.49673 * 95.08946 * 8 7 6 11 11 C 1.38594 * 121.65547 * 0.03300 * 7 6 5 12 12 C 1.39443 * 119.20295 * 359.97101 * 11 7 6 13 13 C 1.47999 * 121.10330 * 179.97438 * 12 11 7 14 14 O 1.21527 * 120.00511 * 129.33680 * 13 12 11 15 15 N 1.34783 * 119.99801 * 309.32792 * 13 12 11 16 16 C 1.46496 * 119.99762 * 4.31626 * 15 13 12 17 17 C 1.46504 * 119.99926 * 184.31145 * 15 13 12 18 18 C 1.50700 * 109.46831 * 90.00278 * 17 15 13 19 19 H 1.08004 * 120.00165 * 0.02562 * 18 17 15 20 20 C 1.37876 * 119.99797 * 179.97438 * 18 17 15 21 21 N 1.31517 * 120.00177 * 0.02562 * 20 18 17 22 22 Si 1.86801 * 120.00161 * 179.97438 * 20 18 17 23 23 H 1.48512 * 109.46869 * 0.02562 * 22 20 18 24 24 H 1.48495 * 109.47146 * 119.99876 * 22 20 18 25 25 H 1.48492 * 109.47556 * 240.00472 * 22 20 18 26 26 C 1.40512 * 106.85956 * 359.97089 * 5 4 3 27 27 H 1.09004 * 109.47425 * 273.94624 * 1 2 3 28 28 H 1.09007 * 109.47278 * 33.94503 * 1 2 3 29 29 H 1.09004 * 109.47367 * 153.94584 * 1 2 3 30 30 H 1.08998 * 115.54871 * 309.42854 * 8 7 6 31 31 H 1.08995 * 117.49585 * 0.02562 * 9 8 7 32 32 H 1.08997 * 117.49399 * 145.02702 * 9 8 7 33 33 H 1.09000 * 117.50294 * 214.98361 * 10 8 7 34 34 H 1.09004 * 117.49930 * 359.97438 * 10 8 7 35 35 H 1.08004 * 120.40094 * 179.97438 * 11 7 6 36 36 H 1.08998 * 109.47357 * 84.81036 * 16 15 13 37 37 H 1.09008 * 109.46838 * 204.80451 * 16 15 13 38 38 H 1.08998 * 109.47414 * 324.80487 * 16 15 13 39 39 H 1.08998 * 109.47084 * 210.00002 * 17 15 13 40 40 H 1.08999 * 109.47083 * 330.00112 * 17 15 13 41 41 H 0.96998 * 120.00206 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2761 1.0457 0.0000 4 8 3.6303 0.6418 -0.0006 5 6 3.6965 -0.7050 -0.0015 6 7 4.7070 -1.5613 -0.0019 7 6 4.5181 -2.8633 -0.0024 8 6 5.7148 -3.7792 -0.0023 9 6 5.4838 -5.2434 0.3770 10 6 6.2021 -4.3046 1.3496 11 6 3.2461 -3.4137 -0.0032 12 6 2.1383 -2.5668 -0.0029 13 6 0.7613 -3.1093 -0.0043 14 8 -0.0491 -2.7122 0.8097 15 7 0.4060 -4.0435 -0.9084 16 6 1.4065 -4.5909 -1.8279 17 6 -0.9808 -4.5117 -0.9716 18 6 -1.7589 -3.6491 -1.9316 19 1 -1.2693 -2.8339 -2.4437 20 6 -3.0956 -3.9011 -2.1568 21 7 -3.6917 -4.8940 -1.5335 22 14 -4.0603 -2.8315 -3.3462 23 1 -3.1658 -1.7899 -3.9124 24 1 -4.5969 -3.6734 -4.4455 25 1 -5.1847 -2.1811 -2.6267 26 6 2.3734 -1.1780 -0.0009 27 1 -0.3634 0.0707 1.0252 28 1 -0.3634 0.8526 -0.5739 29 1 -0.3634 -0.9232 -0.4514 30 1 6.4680 -3.5687 -0.7615 31 1 4.4662 -5.5442 0.6259 32 1 6.0853 -5.9961 -0.1326 33 1 7.2758 -4.4401 1.4795 34 1 5.6574 -3.9874 2.2388 35 1 3.1145 -4.4857 -0.0040 36 1 1.9376 -5.4093 -1.3418 37 1 0.9110 -4.9616 -2.7253 38 1 2.1154 -3.8091 -2.1009 39 1 -0.9998 -5.5459 -1.3152 40 1 -1.4307 -4.4496 0.0193 41 1 -4.6321 -5.0711 -1.6917 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000298138522.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:00:14 Heat of formation + Delta-G solvation = 58.733630 kcal Electronic energy + Delta-G solvation = -26433.077905 eV Core-core repulsion = 22702.476202 eV Total energy + Delta-G solvation = -3730.601704 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.137 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -43.38975 -41.14494 -40.21029 -37.55398 -36.81110 -36.02007 -34.85516 -33.55519 -31.48244 -29.93527 -29.77672 -27.74212 -26.53916 -25.61824 -24.67178 -23.11275 -22.69245 -21.72680 -20.29033 -19.19490 -18.78498 -18.64043 -18.32006 -17.71765 -17.26298 -16.80523 -16.45795 -16.11652 -15.80888 -15.38997 -14.92847 -14.71427 -14.54825 -14.45758 -14.33838 -14.11815 -13.95748 -13.63316 -13.50886 -13.13306 -13.08160 -12.85575 -12.60325 -12.58408 -12.25088 -12.23505 -12.21851 -11.69817 -11.65766 -11.39257 -11.38438 -10.80638 -10.63330 -10.56055 -10.10147 -9.55818 -8.22453 -6.35962 -1.05131 -0.40051 0.58935 0.77787 1.38596 1.40379 1.47460 1.53410 1.94930 2.22057 2.36205 2.41363 2.78806 2.92659 3.08709 3.10346 3.13608 3.36385 3.66203 3.88009 3.96015 4.00338 4.17781 4.22303 4.29969 4.39056 4.43702 4.44376 4.54390 4.62308 4.84373 4.88804 4.94540 5.00318 5.05167 5.10970 5.19431 5.23426 5.31544 5.49685 5.73675 5.76555 6.03805 6.34442 6.48668 6.71662 7.06975 7.35482 8.84919 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.014131 B = 0.004570 C = 0.003700 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1981.023060 B = 6125.027822 C = 7566.726019 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C 0.160 3.840 3 N -0.292 5.292 4 O -0.098 6.098 5 C 0.285 3.715 6 N -0.480 5.480 7 C 0.242 3.758 8 C -0.130 4.130 9 C -0.150 4.150 10 C -0.157 4.157 11 C -0.161 4.161 12 C 0.011 3.989 13 C 0.543 3.457 14 O -0.557 6.557 15 N -0.588 5.588 16 C 0.069 3.931 17 C 0.259 3.741 18 C -0.542 4.542 19 H 0.054 0.946 20 C 0.017 3.983 21 N -0.923 5.923 22 Si 0.958 3.042 23 H -0.268 1.268 24 H -0.273 1.273 25 H -0.282 1.282 26 C -0.237 4.237 27 H 0.106 0.894 28 H 0.106 0.894 29 H 0.079 0.921 30 H 0.145 0.855 31 H 0.104 0.896 32 H 0.133 0.867 33 H 0.124 0.876 34 H 0.086 0.914 35 H 0.187 0.813 36 H 0.091 0.909 37 H 0.079 0.921 38 H 0.071 0.929 39 H 0.035 0.965 40 H 0.011 0.989 41 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.662 -1.930 1.163 18.798 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.020 4.020 3 N -0.042 5.042 4 O -0.100 6.100 5 C 0.103 3.897 6 N -0.201 5.201 7 C 0.099 3.901 8 C -0.148 4.148 9 C -0.187 4.187 10 C -0.195 4.195 11 C -0.181 4.181 12 C -0.002 4.002 13 C 0.329 3.671 14 O -0.436 6.436 15 N -0.318 5.318 16 C -0.072 4.072 17 C 0.138 3.862 18 C -0.580 4.580 19 H 0.072 0.928 20 C -0.183 4.183 21 N -0.563 5.563 22 Si 0.783 3.217 23 H -0.192 1.192 24 H -0.199 1.199 25 H -0.207 1.207 26 C -0.243 4.243 27 H 0.124 0.876 28 H 0.124 0.876 29 H 0.098 0.902 30 H 0.163 0.837 31 H 0.122 0.878 32 H 0.151 0.849 33 H 0.143 0.857 34 H 0.104 0.896 35 H 0.204 0.796 36 H 0.109 0.891 37 H 0.098 0.902 38 H 0.090 0.910 39 H 0.053 0.947 40 H 0.029 0.971 41 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 19.025 -0.064 1.566 19.089 hybrid contribution -1.909 -0.185 -0.457 1.972 sum 17.115 -0.248 1.110 17.153 Atomic orbital electron populations 1.20637 0.82738 1.05248 1.05596 1.24797 0.99076 0.88954 0.89195 1.80038 0.83856 1.17232 1.23057 1.89171 1.23860 1.15476 1.81535 1.20385 0.89303 0.86346 0.93686 1.66286 1.32443 1.03102 1.18244 1.20977 0.94356 0.87061 0.87748 1.20986 0.96332 0.94286 1.03231 1.23362 1.03254 0.90461 1.01616 1.23146 1.02654 1.01993 0.91657 1.22492 0.90182 1.02843 1.02584 1.20020 0.95000 0.91169 0.94013 1.18278 0.86446 0.80256 0.82140 1.90766 1.52586 1.60300 1.39978 1.48092 1.11950 1.38512 1.33256 1.22174 0.91353 0.99594 0.94120 1.18947 0.76218 0.94608 0.96377 1.21661 0.95430 1.15486 1.25440 0.92768 1.25692 0.98428 0.96454 0.97703 1.70028 1.12100 1.30700 1.43469 0.85504 0.78517 0.78901 0.78758 1.19190 1.19880 1.20744 1.21352 0.93559 0.94823 1.14609 0.87614 0.87589 0.90197 0.83709 0.87763 0.84864 0.85745 0.89565 0.79598 0.89090 0.90236 0.91032 0.94693 0.97097 0.92378 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.79 9.30 71.23 0.66 -2.13 16 2 C 0.16 5.56 7.46 44.94 0.34 5.89 16 3 N -0.29 -10.26 12.81 -43.68 -0.56 -10.82 16 4 O -0.10 -3.48 12.06 29.78 0.36 -3.12 16 5 C 0.29 9.54 8.64 85.15 0.74 10.27 16 6 N -0.48 -13.87 10.25 -296.38 -3.04 -16.91 16 7 C 0.24 5.42 6.46 42.68 0.28 5.69 16 8 C -0.13 -1.79 6.20 -11.54 -0.07 -1.86 16 9 C -0.15 -1.29 9.79 30.62 0.30 -0.99 16 10 C -0.16 -1.74 10.24 30.62 0.31 -1.43 16 11 C -0.16 -3.76 7.20 22.65 0.16 -3.60 16 12 C 0.01 0.35 4.86 -19.76 -0.10 0.25 16 13 C 0.54 21.16 6.24 86.83 0.54 21.70 16 14 O -0.56 -25.91 14.32 -3.80 -0.05 -25.96 16 15 N -0.59 -22.48 2.86 -854.40 -2.44 -24.92 16 16 C 0.07 1.84 9.12 127.77 1.17 3.01 16 17 C 0.26 12.58 5.17 85.63 0.44 13.02 16 18 C -0.54 -28.63 9.39 25.60 0.24 -28.39 16 19 H 0.05 2.86 7.81 -2.91 -0.02 2.83 16 20 C 0.02 0.92 5.46 84.65 0.46 1.38 16 21 N -0.92 -52.33 13.29 21.45 0.28 -52.04 16 22 Si 0.96 42.36 29.54 68.60 2.03 44.38 16 23 H -0.27 -11.51 7.11 99.48 0.71 -10.80 16 24 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 25 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 26 C -0.24 -8.16 6.17 -20.00 -0.12 -8.29 16 27 H 0.11 3.32 8.14 -2.38 -0.02 3.30 16 28 H 0.11 2.93 8.14 -2.38 -0.02 2.91 16 29 H 0.08 3.13 5.85 -2.39 -0.01 3.11 16 30 H 0.15 1.66 8.14 -2.39 -0.02 1.65 16 31 H 0.10 0.91 6.35 -2.39 -0.02 0.89 16 32 H 0.13 0.55 8.14 -2.39 -0.02 0.53 16 33 H 0.12 0.92 8.14 -2.39 -0.02 0.90 16 34 H 0.09 1.19 8.14 -2.38 -0.02 1.17 16 35 H 0.19 3.15 4.73 -2.91 -0.01 3.14 16 36 H 0.09 1.69 7.19 -2.39 -0.02 1.67 16 37 H 0.08 2.18 8.03 -2.38 -0.02 2.16 16 38 H 0.07 1.70 6.36 -2.39 -0.02 1.69 16 39 H 0.04 1.71 8.07 -2.39 -0.02 1.69 16 40 H 0.01 0.61 7.37 -2.39 -0.02 0.59 16 41 H 0.27 14.27 8.31 -92.71 -0.77 13.50 16 Total: -1.00 -69.56 347.06 3.00 -66.55 By element: Atomic # 1 Polarization: 7.24 SS G_CDS: 1.08 Total: 8.32 kcal Atomic # 6 Polarization: 9.18 SS G_CDS: 5.35 Total: 14.53 kcal Atomic # 7 Polarization: -98.95 SS G_CDS: -5.75 Total: -104.70 kcal Atomic # 8 Polarization: -29.39 SS G_CDS: 0.30 Total: -29.09 kcal Atomic # 14 Polarization: 42.36 SS G_CDS: 2.03 Total: 44.38 kcal Total: -69.56 3.00 -66.55 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000298138522.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.285 kcal (2) G-P(sol) polarization free energy of solvation -69.555 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.730 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.003 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.552 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.734 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds