Wall clock time and date at job start Tue Mar 31 2020 11:24:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38312 * 119.96409 * 2 1 4 4 C 1.38261 * 120.14498 * 180.02562 * 3 2 1 5 5 C 1.38128 * 120.07438 * 359.97153 * 4 3 2 6 6 C 1.50703 * 120.03741 * 180.02562 * 5 4 3 7 7 C 1.38869 * 119.92338 * 0.28107 * 5 4 3 8 8 N 1.39988 * 120.07025 * 179.70264 * 7 5 4 9 9 N 1.39859 * 119.79082 * 54.72014 * 8 7 5 10 10 C 1.29717 * 121.22174 * 198.87104 * 9 8 7 11 11 C 1.46506 * 119.60063 * 180.41425 * 10 9 8 12 12 O 1.21735 * 120.00427 * 180.27778 * 11 10 9 13 13 N 1.34780 * 119.99892 * 0.27770 * 11 10 9 14 14 C 1.36699 * 120.00228 * 180.02562 * 13 11 10 15 15 H 1.07997 * 119.99920 * 0.02562 * 14 13 11 16 16 C 1.39132 * 120.00121 * 179.97438 * 14 13 11 17 17 N 1.31313 * 120.00101 * 359.97438 * 16 14 13 18 18 Si 1.86799 * 119.99894 * 180.02562 * 16 14 13 19 19 H 1.48498 * 109.47308 * 60.00022 * 18 16 14 20 20 H 1.48499 * 109.46979 * 180.02562 * 18 16 14 21 21 H 1.48503 * 109.46891 * 299.99914 * 18 16 14 22 22 C 1.50547 * 120.84120 * 0.69271 * 10 9 8 23 23 C 1.53006 * 109.60114 * 325.51811 * 22 10 9 24 24 C 1.34740 * 119.78997 * 234.99518 * 8 7 5 25 25 O 1.21246 * 120.11541 * 359.75265 * 24 8 7 26 26 C 1.38082 * 119.96201 * 179.97438 * 2 1 3 27 27 H 1.09000 * 109.47252 * 90.00339 * 1 2 3 28 28 H 1.09003 * 109.47137 * 210.00219 * 1 2 3 29 29 H 1.08994 * 109.47130 * 329.99989 * 1 2 3 30 30 H 1.08001 * 119.92577 * 359.97438 * 3 2 1 31 31 H 1.08004 * 119.96695 * 179.97438 * 4 3 2 32 32 H 1.09002 * 109.47152 * 90.00122 * 6 5 4 33 33 H 1.09001 * 109.46980 * 330.00222 * 6 5 4 34 34 H 1.09004 * 109.47113 * 210.00203 * 6 5 4 35 35 H 0.97001 * 119.99615 * 359.97438 * 13 11 10 36 36 H 0.96998 * 119.99938 * 180.02562 * 17 16 14 37 37 H 1.09003 * 109.44988 * 205.47663 * 22 10 9 38 38 H 1.09001 * 109.44963 * 85.56148 * 22 10 9 39 39 H 1.08997 * 109.51291 * 287.54363 * 23 22 10 40 40 H 1.09005 * 109.51101 * 167.39377 * 23 22 10 41 41 H 1.07992 * 120.04169 * 0.04627 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1978 1.1982 0.0000 4 6 3.5804 1.2026 -0.0005 5 6 4.2764 0.0095 -0.0005 6 6 5.7834 0.0152 -0.0005 7 6 3.5858 -1.1953 -0.0058 8 7 4.2880 -2.4063 -0.0120 9 7 5.2437 -2.6605 0.9770 10 6 6.1525 -3.5718 0.8154 11 6 7.1308 -3.8148 1.8786 12 8 7.9900 -4.6648 1.7327 13 7 7.0796 -3.0971 3.0183 14 6 7.9927 -3.3234 4.0102 15 1 8.7554 -4.0769 3.8803 16 6 7.9401 -2.5822 5.1864 17 7 7.0137 -1.6649 5.3437 18 14 9.1883 -2.8909 6.5415 19 1 10.5563 -2.6408 6.0207 20 1 8.9175 -1.9783 7.6812 21 1 9.0830 -4.2994 6.9999 22 6 6.2189 -4.3792 -0.4535 23 6 4.8039 -4.6188 -0.9840 24 6 4.0429 -3.3173 -0.9740 25 8 3.2136 -3.0910 -1.8291 26 6 2.1966 -1.1963 0.0005 27 1 -0.3634 -0.0001 -1.0277 28 1 -0.3633 -0.8900 0.5139 29 1 -0.3633 0.8899 0.5138 30 1 1.6560 2.1325 -0.0004 31 1 4.1169 2.1400 -0.0010 32 1 6.1467 0.0166 1.0272 33 1 6.1433 0.9066 -0.5143 34 1 6.1501 -0.8734 -0.5143 35 1 6.3952 -2.4196 3.1344 36 1 6.9773 -1.1479 6.1636 37 1 6.6971 -5.3373 -0.2495 38 1 6.7991 -3.8360 -1.1994 39 1 4.2946 -5.3432 -0.3485 40 1 4.8572 -5.0015 -2.0033 41 1 1.6567 -2.1316 0.0002 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000299536044.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:24:02 Heat of formation + Delta-G solvation = -6.627912 kcal Electronic energy + Delta-G solvation = -26206.764124 eV Core-core repulsion = 22473.328131 eV Total energy + Delta-G solvation = -3733.435993 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.137 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.96439 -39.05372 -38.39122 -36.68537 -34.59224 -34.11433 -33.17441 -31.90608 -30.94251 -29.71462 -29.14673 -25.85240 -25.30974 -24.64644 -23.51819 -22.39425 -20.95242 -20.05488 -18.34869 -17.55520 -17.33829 -17.04959 -16.20633 -15.69795 -15.37915 -15.16903 -14.88356 -14.22528 -14.08117 -13.92934 -13.87200 -13.66700 -13.17811 -13.14539 -12.87192 -12.81951 -12.68086 -12.31916 -12.01390 -11.91552 -11.76248 -11.51142 -11.44560 -11.26234 -11.23738 -10.88035 -10.66220 -10.60424 -10.41586 -9.77375 -9.50076 -9.26886 -8.72628 -8.47938 -8.27446 -7.96302 -6.75457 -4.05112 1.26748 1.42299 1.46304 2.42694 2.62981 3.09920 3.12382 3.15714 3.71062 3.90716 4.04805 4.18784 4.54463 4.70929 4.83964 4.88149 5.04066 5.05075 5.13111 5.15046 5.21223 5.29304 5.46662 5.53668 5.56544 5.63226 5.76186 5.79321 5.80651 5.85351 5.89567 6.05792 6.12378 6.34775 6.39405 6.42758 6.54861 6.64141 6.69566 7.08643 7.23248 7.73664 7.83551 8.19743 8.34785 8.85384 9.23243 9.79304 10.38613 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.013481 B = 0.004273 C = 0.003538 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2076.462089 B = 6550.914036 C = 7912.468193 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.086 4.086 3 C -0.119 4.119 4 C -0.108 4.108 5 C -0.078 4.078 6 C -0.108 4.108 7 C 0.167 3.833 8 N -0.410 5.410 9 N -0.246 5.246 10 C 0.113 3.887 11 C 0.458 3.542 12 O -0.595 6.595 13 N -0.505 5.505 14 C -0.293 4.293 15 H 0.114 0.886 16 C 0.029 3.971 17 N -0.865 5.865 18 Si 0.939 3.061 19 H -0.268 1.268 20 H -0.281 1.281 21 H -0.268 1.268 22 C -0.106 4.106 23 C -0.138 4.138 24 C 0.494 3.506 25 O -0.522 6.522 26 C -0.098 4.098 27 H 0.069 0.931 28 H 0.065 0.935 29 H 0.066 0.934 30 H 0.123 0.877 31 H 0.127 0.873 32 H 0.083 0.917 33 H 0.063 0.937 34 H 0.057 0.943 35 H 0.405 0.595 36 H 0.282 0.718 37 H 0.116 0.884 38 H 0.094 0.906 39 H 0.106 0.894 40 H 0.114 0.886 41 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.155 3.943 -8.764 12.604 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.087 4.087 3 C -0.138 4.138 4 C -0.127 4.127 5 C -0.080 4.080 6 C -0.165 4.165 7 C 0.076 3.924 8 N -0.223 5.223 9 N -0.057 5.057 10 C -0.077 4.077 11 C 0.244 3.756 12 O -0.481 6.481 13 N -0.138 5.138 14 C -0.425 4.425 15 H 0.131 0.869 16 C -0.178 4.178 17 N -0.503 5.503 18 Si 0.765 3.235 19 H -0.193 1.193 20 H -0.206 1.206 21 H -0.193 1.193 22 C -0.146 4.146 23 C -0.178 4.178 24 C 0.283 3.717 25 O -0.395 6.395 26 C -0.119 4.119 27 H 0.087 0.913 28 H 0.084 0.916 29 H 0.085 0.915 30 H 0.141 0.859 31 H 0.145 0.855 32 H 0.102 0.898 33 H 0.082 0.918 34 H 0.076 0.924 35 H 0.240 0.760 36 H 0.092 0.908 37 H 0.134 0.866 38 H 0.112 0.888 39 H 0.124 0.876 40 H 0.132 0.868 41 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -8.514 4.271 -8.690 12.894 hybrid contribution 0.279 -0.277 0.218 0.449 sum -8.235 3.994 -8.473 12.472 Atomic orbital electron populations 1.20740 0.90987 1.02681 1.02197 1.19661 0.96022 0.92411 1.00583 1.20991 0.94061 0.97360 1.01357 1.20850 0.93985 0.96969 1.00893 1.19896 0.96626 0.91728 0.99730 1.20719 0.90536 1.01826 1.03387 1.17123 0.89865 0.83118 1.02275 1.46238 1.35280 1.15769 1.25022 1.75184 1.00257 1.18748 1.11511 1.25255 0.92125 0.93218 0.97143 1.16576 0.87663 0.88191 0.83170 1.90685 1.39272 1.37759 1.80407 1.41984 1.27666 1.31396 1.12774 1.19944 1.09458 1.19411 0.93659 0.86870 1.25555 0.97908 0.95202 0.99111 1.69600 1.31958 1.20563 1.28183 0.85775 0.80039 0.78758 0.78975 1.19312 1.20569 1.19330 1.20868 0.96030 1.03545 0.94175 1.21840 0.95845 0.94694 1.05464 1.21401 0.83486 0.86492 0.80288 1.90708 1.34163 1.78294 1.36287 1.20869 0.92164 0.98273 1.00582 0.91273 0.91646 0.91492 0.85914 0.85534 0.89834 0.91762 0.92443 0.75958 0.90824 0.86598 0.88833 0.87551 0.86773 0.86049 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.10 10.01 36.01 0.36 -0.74 16 2 C -0.09 -1.15 5.88 -104.65 -0.62 -1.77 16 3 C -0.12 -1.49 9.70 -39.55 -0.38 -1.87 16 4 C -0.11 -1.46 9.70 -39.61 -0.38 -1.84 16 5 C -0.08 -1.24 5.88 -104.43 -0.61 -1.85 16 6 C -0.11 -1.66 8.93 36.01 0.32 -1.34 16 7 C 0.17 2.89 5.44 -83.65 -0.46 2.44 16 8 N -0.41 -7.28 2.88 -9.83 -0.03 -7.31 16 9 N -0.25 -4.65 8.91 34.85 0.31 -4.34 16 10 C 0.11 2.14 6.77 -80.23 -0.54 1.60 16 11 C 0.46 10.55 7.72 -12.93 -0.10 10.45 16 12 O -0.59 -15.11 15.80 5.16 0.08 -15.03 16 13 N -0.50 -12.42 5.26 -12.23 -0.06 -12.48 16 14 C -0.29 -7.58 9.68 -15.05 -0.15 -7.73 16 15 H 0.11 3.00 7.15 -52.49 -0.38 2.62 16 16 C 0.03 0.73 5.50 -17.44 -0.10 0.63 16 17 N -0.87 -21.96 13.05 55.51 0.72 -21.24 16 18 Si 0.94 19.20 29.55 -169.99 -5.02 14.17 16 19 H -0.27 -5.43 7.11 56.52 0.40 -5.03 16 20 H -0.28 -5.61 7.11 56.52 0.40 -5.21 16 21 H -0.27 -5.45 7.11 56.52 0.40 -5.05 16 22 C -0.11 -1.58 5.85 -27.95 -0.16 -1.74 16 23 C -0.14 -1.85 6.20 -27.85 -0.17 -2.02 16 24 C 0.49 8.33 7.35 -10.97 -0.08 8.25 16 25 O -0.52 -9.77 16.14 5.59 0.09 -9.68 16 26 C -0.10 -1.57 8.47 -39.39 -0.33 -1.90 16 27 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 28 H 0.06 0.63 8.08 -51.93 -0.42 0.22 16 29 H 0.07 0.56 8.08 -51.93 -0.42 0.14 16 30 H 0.12 1.17 8.06 -52.49 -0.42 0.75 16 31 H 0.13 1.38 8.06 -52.48 -0.42 0.96 16 32 H 0.08 1.40 8.14 -51.93 -0.42 0.97 16 33 H 0.06 0.82 8.09 -51.93 -0.42 0.40 16 34 H 0.06 0.94 7.05 -51.93 -0.37 0.58 16 35 H 0.40 9.93 7.18 -40.82 -0.29 9.64 16 36 H 0.28 6.69 8.31 -40.82 -0.34 6.35 16 37 H 0.12 1.69 7.54 -51.93 -0.39 1.30 16 38 H 0.09 1.28 8.14 -51.93 -0.42 0.86 16 39 H 0.11 1.31 8.14 -51.93 -0.42 0.88 16 40 H 0.11 1.25 8.14 -51.93 -0.42 0.83 16 41 H 0.12 1.92 7.84 -52.49 -0.41 1.51 16 LS Contribution 352.12 15.07 5.31 5.31 Total: -1.00 -29.91 352.12 -7.20 -37.11 By element: Atomic # 1 Polarization: 18.13 SS G_CDS: -5.19 Total: 12.94 kcal Atomic # 6 Polarization: 3.96 SS G_CDS: -3.41 Total: 0.55 kcal Atomic # 7 Polarization: -46.31 SS G_CDS: 0.94 Total: -45.37 kcal Atomic # 8 Polarization: -24.88 SS G_CDS: 0.17 Total: -24.70 kcal Atomic # 14 Polarization: 19.20 SS G_CDS: -5.02 Total: 14.17 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -29.91 -7.20 -37.11 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299536044.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.479 kcal (2) G-P(sol) polarization free energy of solvation -29.907 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.572 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.200 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.107 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.628 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds