Wall clock time and date at job start Tue Mar 31 2020 11:24:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38312 * 119.96409 * 2 1 4 4 C 1.38261 * 120.14498 * 180.02562 * 3 2 1 5 5 C 1.38128 * 120.07438 * 359.97153 * 4 3 2 6 6 C 1.50703 * 120.03741 * 180.02562 * 5 4 3 7 7 C 1.38869 * 119.92338 * 0.28107 * 5 4 3 8 8 N 1.39988 * 120.07025 * 179.70264 * 7 5 4 9 9 N 1.39859 * 119.79082 * 54.72014 * 8 7 5 10 10 C 1.29717 * 121.22174 * 198.87104 * 9 8 7 11 11 C 1.46506 * 119.60063 * 180.41425 * 10 9 8 12 12 O 1.21735 * 120.00427 * 180.27778 * 11 10 9 13 13 N 1.34780 * 119.99892 * 0.27770 * 11 10 9 14 14 C 1.36699 * 120.00228 * 180.02562 * 13 11 10 15 15 H 1.07997 * 119.99920 * 0.02562 * 14 13 11 16 16 C 1.39132 * 120.00121 * 179.97438 * 14 13 11 17 17 N 1.31313 * 120.00101 * 359.97438 * 16 14 13 18 18 Si 1.86799 * 119.99894 * 180.02562 * 16 14 13 19 19 H 1.48498 * 109.47308 * 60.00022 * 18 16 14 20 20 H 1.48499 * 109.46979 * 180.02562 * 18 16 14 21 21 H 1.48503 * 109.46891 * 299.99914 * 18 16 14 22 22 C 1.50547 * 120.84120 * 0.69271 * 10 9 8 23 23 C 1.53006 * 109.60114 * 325.51811 * 22 10 9 24 24 C 1.34740 * 119.78997 * 234.99518 * 8 7 5 25 25 O 1.21246 * 120.11541 * 359.75265 * 24 8 7 26 26 C 1.38082 * 119.96201 * 179.97438 * 2 1 3 27 27 H 1.09000 * 109.47252 * 90.00339 * 1 2 3 28 28 H 1.09003 * 109.47137 * 210.00219 * 1 2 3 29 29 H 1.08994 * 109.47130 * 329.99989 * 1 2 3 30 30 H 1.08001 * 119.92577 * 359.97438 * 3 2 1 31 31 H 1.08004 * 119.96695 * 179.97438 * 4 3 2 32 32 H 1.09002 * 109.47152 * 90.00122 * 6 5 4 33 33 H 1.09001 * 109.46980 * 330.00222 * 6 5 4 34 34 H 1.09004 * 109.47113 * 210.00203 * 6 5 4 35 35 H 0.97001 * 119.99615 * 359.97438 * 13 11 10 36 36 H 0.96998 * 119.99938 * 180.02562 * 17 16 14 37 37 H 1.09003 * 109.44988 * 205.47663 * 22 10 9 38 38 H 1.09001 * 109.44963 * 85.56148 * 22 10 9 39 39 H 1.08997 * 109.51291 * 287.54363 * 23 22 10 40 40 H 1.09005 * 109.51101 * 167.39377 * 23 22 10 41 41 H 1.07992 * 120.04169 * 0.04627 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1978 1.1982 0.0000 4 6 3.5804 1.2026 -0.0005 5 6 4.2764 0.0095 -0.0005 6 6 5.7834 0.0152 -0.0005 7 6 3.5858 -1.1953 -0.0058 8 7 4.2880 -2.4063 -0.0120 9 7 5.2437 -2.6605 0.9770 10 6 6.1525 -3.5718 0.8154 11 6 7.1308 -3.8148 1.8786 12 8 7.9900 -4.6648 1.7327 13 7 7.0796 -3.0971 3.0183 14 6 7.9927 -3.3234 4.0102 15 1 8.7554 -4.0769 3.8803 16 6 7.9401 -2.5822 5.1864 17 7 7.0137 -1.6649 5.3437 18 14 9.1883 -2.8909 6.5415 19 1 10.5563 -2.6408 6.0207 20 1 8.9175 -1.9783 7.6812 21 1 9.0830 -4.2994 6.9999 22 6 6.2189 -4.3792 -0.4535 23 6 4.8039 -4.6188 -0.9840 24 6 4.0429 -3.3173 -0.9740 25 8 3.2136 -3.0910 -1.8291 26 6 2.1966 -1.1963 0.0005 27 1 -0.3634 -0.0001 -1.0277 28 1 -0.3633 -0.8900 0.5139 29 1 -0.3633 0.8899 0.5138 30 1 1.6560 2.1325 -0.0004 31 1 4.1169 2.1400 -0.0010 32 1 6.1467 0.0166 1.0272 33 1 6.1433 0.9066 -0.5143 34 1 6.1501 -0.8734 -0.5143 35 1 6.3952 -2.4196 3.1344 36 1 6.9773 -1.1479 6.1636 37 1 6.6971 -5.3373 -0.2495 38 1 6.7991 -3.8360 -1.1994 39 1 4.2946 -5.3432 -0.3485 40 1 4.8572 -5.0015 -2.0033 41 1 1.6567 -2.1316 0.0002 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000299536044.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:24:02 Heat of formation + Delta-G solvation = -24.123506 kcal Electronic energy + Delta-G solvation = -26207.522790 eV Core-core repulsion = 22473.328131 eV Total energy + Delta-G solvation = -3734.194659 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.137 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.29329 -40.46407 -39.92135 -38.20563 -36.24112 -35.55617 -34.33817 -33.64308 -32.44169 -30.93773 -30.20307 -27.55622 -26.69059 -25.76111 -24.91102 -23.71540 -22.14799 -21.58604 -20.19306 -19.09758 -18.77323 -18.33783 -17.50025 -17.03958 -16.79344 -16.55968 -16.34378 -15.85143 -15.70893 -15.20792 -15.07433 -14.90452 -14.80005 -14.25094 -14.16686 -13.95333 -13.76219 -13.66283 -13.52024 -13.24227 -12.93613 -12.90881 -12.69814 -12.57278 -12.50434 -12.34908 -12.12717 -12.05119 -11.88607 -11.59197 -10.96492 -10.62934 -10.49173 -10.17649 -9.62121 -9.21052 -8.60492 -6.03946 -0.10832 0.13071 0.33348 1.06945 1.26617 1.44663 1.49253 1.56288 2.23035 2.27041 2.55539 2.76010 3.15131 3.19465 3.49655 3.78029 3.79041 3.81174 3.92492 4.03357 4.07015 4.19381 4.21767 4.43540 4.48192 4.59998 4.65248 4.68014 4.71381 4.78111 4.83082 4.84556 5.03392 5.09219 5.22085 5.28848 5.30900 5.37174 5.51811 5.57734 5.83362 5.98398 6.37409 6.49221 6.81222 6.95171 7.35165 7.89134 8.54647 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.013481 B = 0.004273 C = 0.003538 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2076.462089 B = 6550.914036 C = 7912.468193 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.087 4.087 3 C -0.113 4.113 4 C -0.107 4.107 5 C -0.101 4.101 6 C -0.101 4.101 7 C 0.130 3.870 8 N -0.410 5.410 9 N -0.246 5.246 10 C 0.110 3.890 11 C 0.465 3.535 12 O -0.617 6.617 13 N -0.521 5.521 14 C -0.334 4.334 15 H 0.098 0.902 16 C -0.004 4.004 17 N -0.897 5.897 18 Si 1.003 2.997 19 H -0.265 1.265 20 H -0.270 1.270 21 H -0.266 1.266 22 C -0.099 4.099 23 C -0.128 4.128 24 C 0.489 3.511 25 O -0.541 6.541 26 C -0.119 4.119 27 H 0.080 0.920 28 H 0.064 0.936 29 H 0.089 0.911 30 H 0.161 0.839 31 H 0.154 0.846 32 H 0.062 0.938 33 H 0.089 0.911 34 H 0.040 0.960 35 H 0.402 0.598 36 H 0.286 0.714 37 H 0.123 0.877 38 H 0.109 0.891 39 H 0.121 0.879 40 H 0.147 0.853 41 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.268 4.963 -9.662 14.279 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.087 4.087 3 C -0.131 4.131 4 C -0.126 4.126 5 C -0.103 4.103 6 C -0.158 4.158 7 C 0.040 3.960 8 N -0.223 5.223 9 N -0.057 5.057 10 C -0.082 4.082 11 C 0.252 3.748 12 O -0.504 6.504 13 N -0.154 5.154 14 C -0.465 4.465 15 H 0.116 0.884 16 C -0.208 4.208 17 N -0.535 5.535 18 Si 0.824 3.176 19 H -0.189 1.189 20 H -0.195 1.195 21 H -0.191 1.191 22 C -0.139 4.139 23 C -0.167 4.167 24 C 0.279 3.721 25 O -0.416 6.416 26 C -0.139 4.139 27 H 0.099 0.901 28 H 0.083 0.917 29 H 0.108 0.892 30 H 0.178 0.822 31 H 0.172 0.828 32 H 0.081 0.919 33 H 0.108 0.892 34 H 0.059 0.941 35 H 0.237 0.763 36 H 0.096 0.904 37 H 0.141 0.859 38 H 0.127 0.873 39 H 0.139 0.861 40 H 0.165 0.835 41 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -9.634 5.296 -9.582 14.583 hybrid contribution 0.446 -0.524 0.311 0.755 sum -9.188 4.772 -9.271 13.897 Atomic orbital electron populations 1.20814 0.88524 1.03830 1.03266 1.20114 0.97873 0.91829 0.98920 1.21451 0.93837 0.98506 0.99305 1.21240 0.94777 0.97067 0.99469 1.20107 0.96765 0.92401 1.01033 1.20633 0.90750 1.02273 1.02102 1.17546 0.90670 0.83399 1.04376 1.46320 1.34752 1.16502 1.24772 1.75053 1.00021 1.17980 1.12610 1.24983 0.91389 0.94314 0.97540 1.17112 0.87554 0.86851 0.83300 1.90652 1.40351 1.38346 1.81069 1.42004 1.27940 1.32084 1.13378 1.19958 1.10549 1.20767 0.95231 0.88403 1.26352 0.99403 0.94458 1.00578 1.69669 1.33412 1.21463 1.28987 0.84844 0.77684 0.78739 0.76286 1.18947 1.19468 1.19056 1.20934 0.97435 1.03250 0.92318 1.21929 0.94142 0.92998 1.07659 1.22040 0.83340 0.87203 0.79501 1.90691 1.35197 1.78845 1.36833 1.20990 0.91815 0.99144 1.01968 0.90099 0.91720 0.89185 0.82152 0.82815 0.91949 0.89180 0.94118 0.76311 0.90447 0.85876 0.87319 0.86115 0.83475 0.86997 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.88 10.01 71.24 0.71 -1.17 16 2 C -0.09 -2.15 5.88 -19.88 -0.12 -2.27 16 3 C -0.11 -2.48 9.70 22.29 0.22 -2.26 16 4 C -0.11 -2.66 9.70 22.25 0.22 -2.44 16 5 C -0.10 -3.18 5.88 -19.74 -0.12 -3.30 16 6 C -0.10 -3.12 8.93 71.24 0.64 -2.49 16 7 C 0.13 4.53 5.44 38.15 0.21 4.74 16 8 N -0.41 -14.64 2.88 -303.44 -0.87 -15.52 16 9 N -0.25 -9.48 8.91 -43.65 -0.39 -9.87 16 10 C 0.11 4.17 6.77 44.98 0.30 4.48 16 11 C 0.47 22.04 7.72 86.40 0.67 22.71 16 12 O -0.62 -31.99 15.80 -4.46 -0.07 -32.07 16 13 N -0.52 -26.70 5.26 -310.81 -1.63 -28.33 16 14 C -0.33 -18.03 9.68 84.15 0.81 -17.22 16 15 H 0.10 5.44 7.15 -2.91 -0.02 5.41 16 16 C 0.00 -0.21 5.50 84.99 0.47 0.26 16 17 N -0.90 -46.74 13.05 21.69 0.28 -46.46 16 18 Si 1.00 39.85 29.55 68.60 2.03 41.88 16 19 H -0.26 -10.28 7.11 99.48 0.71 -9.58 16 20 H -0.27 -10.17 7.11 99.48 0.71 -9.46 16 21 H -0.27 -10.36 7.11 99.48 0.71 -9.66 16 22 C -0.10 -2.83 5.85 29.80 0.17 -2.66 16 23 C -0.13 -3.16 6.20 29.87 0.19 -2.98 16 24 C 0.49 16.12 7.35 87.68 0.64 16.77 16 25 O -0.54 -19.93 16.14 -2.93 -0.05 -19.98 16 26 C -0.12 -3.76 8.47 22.40 0.19 -3.57 16 27 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 28 H 0.06 1.14 8.08 -2.39 -0.02 1.12 16 29 H 0.09 1.17 8.08 -2.39 -0.02 1.15 16 30 H 0.16 2.29 8.06 -2.91 -0.02 2.27 16 31 H 0.15 2.88 8.06 -2.91 -0.02 2.85 16 32 H 0.06 2.16 8.14 -2.39 -0.02 2.14 16 33 H 0.09 2.22 8.09 -2.39 -0.02 2.20 16 34 H 0.04 1.35 7.05 -2.38 -0.02 1.34 16 35 H 0.40 20.69 7.18 -92.71 -0.67 20.02 16 36 H 0.29 13.81 8.31 -92.71 -0.77 13.04 16 37 H 0.12 3.40 7.54 -2.39 -0.02 3.38 16 38 H 0.11 2.80 8.14 -2.39 -0.02 2.78 16 39 H 0.12 2.70 8.14 -2.39 -0.02 2.68 16 40 H 0.15 2.74 8.14 -2.38 -0.02 2.72 16 41 H 0.11 3.62 7.84 -2.91 -0.02 3.59 16 Total: -1.00 -67.41 352.12 4.90 -62.51 By element: Atomic # 1 Polarization: 38.82 SS G_CDS: 0.40 Total: 39.23 kcal Atomic # 6 Polarization: 3.40 SS G_CDS: 5.20 Total: 8.61 kcal Atomic # 7 Polarization: -97.56 SS G_CDS: -2.61 Total: -100.18 kcal Atomic # 8 Polarization: -51.93 SS G_CDS: -0.12 Total: -52.05 kcal Atomic # 14 Polarization: 39.85 SS G_CDS: 2.03 Total: 41.88 kcal Total: -67.41 4.90 -62.51 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299536044.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.385 kcal (2) G-P(sol) polarization free energy of solvation -67.411 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.026 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.902 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.508 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.124 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds