Wall clock time and date at job start Tue Mar 31 2020 10:50:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86807 * 119.99466 * 2 1 4 4 H 1.48492 * 109.47261 * 270.00072 * 3 2 1 5 5 H 1.48505 * 109.46917 * 30.00069 * 3 2 1 6 6 H 1.48494 * 109.46752 * 149.99844 * 3 2 1 7 7 C 1.37870 * 120.00558 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00413 * 180.02562 * 7 2 1 9 9 C 1.50706 * 119.99867 * 359.97438 * 7 2 1 10 10 N 1.46499 * 109.47032 * 180.02562 * 9 7 2 11 11 C 1.46497 * 119.99988 * 263.34409 * 10 9 7 12 12 C 1.50696 * 109.47023 * 265.12834 * 11 10 9 13 13 C 1.34516 * 125.78746 * 90.00419 * 12 11 10 14 14 C 1.41389 * 106.84203 * 179.97438 * 13 12 11 15 15 C 1.34518 * 106.83809 * 359.97438 * 14 13 12 16 16 O 1.34299 * 108.42027 * 359.73821 * 15 14 13 17 17 C 1.34780 * 119.99949 * 83.34685 * 10 9 7 18 18 O 1.21565 * 119.99809 * 183.94268 * 17 10 9 19 19 C 1.47708 * 119.99877 * 3.93778 * 17 10 9 20 20 C 1.41505 * 126.51773 * 173.62421 * 19 17 10 21 21 C 1.35361 * 105.50435 * 179.97438 * 20 19 17 22 22 C 1.50707 * 126.38496 * 179.97438 * 21 20 19 23 23 C 1.53000 * 117.51652 * 146.28914 * 22 21 20 24 24 C 1.52999 * 60.00216 * 107.48067 * 23 22 21 25 25 N 1.35037 * 107.22827 * 0.26580 * 21 20 19 26 26 H 0.96996 * 124.88239 * 179.71615 * 25 21 20 27 27 N 1.28462 * 110.22886 * 359.54790 * 25 21 20 28 28 H 0.96998 * 120.00531 * 0.02562 * 1 2 3 29 29 H 1.09000 * 109.47210 * 59.99762 * 9 7 2 30 30 H 1.08999 * 109.46715 * 300.00054 * 9 7 2 31 31 H 1.08996 * 109.46947 * 25.13032 * 11 10 9 32 32 H 1.09001 * 109.46921 * 145.13132 * 11 10 9 33 33 H 1.07995 * 126.58261 * 359.95585 * 13 12 11 34 34 H 1.08001 * 126.58354 * 179.97438 * 14 13 12 35 35 H 1.07997 * 125.78808 * 180.02562 * 15 14 13 36 36 H 1.08007 * 127.24570 * 0.02562 * 20 19 17 37 37 H 1.09003 * 115.54985 * 0.58564 * 22 21 20 38 38 H 1.08999 * 117.49719 * 214.97726 * 23 22 21 39 39 H 1.09003 * 117.49873 * 359.97438 * 23 22 21 40 40 H 1.08997 * 117.50013 * 252.51148 * 24 23 22 41 41 H 1.08995 * 117.51815 * 107.48090 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6179 0.0000 4 1 2.4965 2.0466 -1.4000 5 1 1.4464 2.6527 0.7001 6 1 3.5466 1.4404 0.7001 7 6 2.0047 -1.1939 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2512 -2.4991 -0.0005 10 7 2.2033 -3.6126 -0.0005 11 6 2.5676 -4.2648 -1.2607 12 6 1.6971 -5.4772 -1.4687 13 6 0.5129 -5.4952 -2.1066 14 6 0.0476 -6.8298 -2.0691 15 6 0.9756 -7.5476 -1.4111 16 8 1.9752 -6.7243 -1.0551 17 6 2.7441 -4.0368 1.1588 18 8 3.5875 -4.9123 1.1517 19 6 2.3120 -3.4380 2.4381 20 6 2.6895 -3.8593 3.7351 21 6 2.0540 -3.0211 4.5871 22 6 2.1278 -3.0512 6.0921 23 6 2.0536 -1.7131 6.8303 24 6 0.8645 -2.6750 6.8690 25 7 1.3365 -2.1571 3.8373 26 1 0.7787 -1.4467 4.1908 27 7 1.5018 -2.4093 2.5886 28 1 -0.4851 0.8400 -0.0004 29 1 0.6242 -2.5567 -0.8903 30 1 0.6250 -2.5570 0.8897 31 1 2.4228 -3.5675 -2.0858 32 1 3.6132 -4.5705 -1.2225 33 1 0.0132 -4.6520 -2.5601 34 1 -0.8756 -7.2016 -2.4884 35 1 0.9274 -8.6072 -1.2079 36 1 3.3470 -4.6770 3.9913 37 1 2.7676 -3.8252 6.5160 38 1 2.6448 -1.6067 7.7398 39 1 1.9519 -0.8107 6.2274 40 1 -0.0199 -2.4055 6.2916 41 1 0.6730 -3.2017 7.8038 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000299567939.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:50:41 Heat of formation + Delta-G solvation = 96.592549 kcal Electronic energy + Delta-G solvation = -26207.916674 eV Core-core repulsion = 22478.956656 eV Total energy + Delta-G solvation = -3728.960018 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.137 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.18918 -42.10247 -38.68562 -37.13930 -35.09945 -32.74615 -32.41218 -31.42670 -30.51214 -29.62858 -27.16745 -25.74289 -23.59010 -22.99959 -22.55821 -22.10470 -21.29393 -20.57840 -20.12382 -18.12933 -17.44563 -17.04516 -16.42907 -16.01118 -15.80499 -15.45209 -15.07282 -14.87951 -14.41399 -14.36402 -13.87215 -13.53902 -13.10414 -12.78116 -12.43278 -12.38780 -12.35084 -12.09729 -12.05581 -11.77503 -11.54835 -11.27378 -11.04600 -10.90385 -10.77795 -10.58128 -10.17239 -9.73346 -9.59622 -9.52483 -9.30762 -8.79403 -8.45425 -8.28446 -8.11956 -7.73685 -6.03382 -4.04958 2.06981 2.28170 2.48186 2.94894 3.26540 3.33545 3.35163 3.38620 3.42126 3.84040 4.02868 4.22190 4.42153 4.48970 4.66848 4.82871 5.03488 5.11821 5.24004 5.31819 5.37660 5.40198 5.43343 5.60895 5.69898 5.80603 5.88053 5.96708 6.07947 6.10639 6.15377 6.30569 6.33459 6.46701 6.76240 6.85795 6.88354 7.36926 7.50514 7.56970 7.76495 7.89624 8.24251 8.29371 8.54127 8.95584 9.05584 9.57644 11.04545 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.009024 B = 0.005635 C = 0.003871 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3102.255892 B = 4967.713133 C = 7230.980859 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.069 3.931 3 Si 0.887 3.113 4 H -0.281 1.281 5 H -0.288 1.288 6 H -0.276 1.276 7 C -0.509 4.509 8 H 0.055 0.945 9 C 0.231 3.769 10 N -0.583 5.583 11 C 0.196 3.804 12 C -0.014 4.014 13 C -0.203 4.203 14 C -0.217 4.217 15 C -0.052 4.052 16 O -0.165 6.165 17 C 0.603 3.397 18 O -0.560 6.560 19 C -0.014 4.014 20 C -0.175 4.175 21 C 0.021 3.979 22 C -0.078 4.078 23 C -0.177 4.177 24 C -0.177 4.177 25 N -0.388 5.388 26 H 0.438 0.562 27 N -0.175 5.175 28 H 0.260 0.740 29 H 0.031 0.969 30 H 0.070 0.930 31 H 0.114 0.886 32 H 0.089 0.911 33 H 0.148 0.852 34 H 0.143 0.857 35 H 0.196 0.804 36 H 0.154 0.846 37 H 0.128 0.872 38 H 0.102 0.898 39 H 0.094 0.906 40 H 0.094 0.906 41 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.297 -7.616 7.511 10.700 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.132 4.132 3 Si 0.715 3.285 4 H -0.207 1.207 5 H -0.214 1.214 6 H -0.201 1.201 7 C -0.549 4.549 8 H 0.073 0.927 9 C 0.111 3.889 10 N -0.313 5.313 11 C 0.073 3.927 12 C -0.066 4.066 13 C -0.223 4.223 14 C -0.237 4.237 15 C -0.121 4.121 16 O -0.060 6.060 17 C 0.391 3.609 18 O -0.438 6.438 19 C -0.175 4.175 20 C -0.203 4.203 21 C -0.103 4.103 22 C -0.097 4.097 23 C -0.215 4.215 24 C -0.215 4.215 25 N -0.103 5.103 26 H 0.281 0.719 27 N -0.010 5.010 28 H 0.069 0.931 29 H 0.049 0.951 30 H 0.087 0.913 31 H 0.132 0.868 32 H 0.108 0.892 33 H 0.166 0.834 34 H 0.161 0.839 35 H 0.213 0.787 36 H 0.172 0.828 37 H 0.146 0.854 38 H 0.121 0.879 39 H 0.113 0.887 40 H 0.112 0.888 41 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -0.348 -7.273 7.014 10.110 hybrid contribution 0.199 0.915 0.509 1.066 sum -0.149 -6.358 7.524 9.851 Atomic orbital electron populations 1.69935 1.05737 1.26499 1.50924 1.24768 0.94658 0.98486 0.95321 0.86683 0.79903 0.83762 0.78146 1.20696 1.21381 1.20136 1.21313 0.93046 0.90355 1.50145 0.92718 1.19871 0.87609 0.81782 0.99594 1.48208 1.45013 1.33915 1.04115 1.19730 0.97122 0.87418 0.88470 1.23242 0.98342 0.84800 1.00205 1.21657 0.96580 0.97989 1.06110 1.21779 1.01760 0.94099 1.06023 1.23953 0.88706 0.96431 1.02998 1.84114 1.41812 1.17723 1.62353 1.16970 0.80731 0.80947 0.82293 1.90695 1.33327 1.32719 1.87063 1.21803 1.03181 0.97927 0.94569 1.21286 1.05492 1.03122 0.90436 1.20353 1.01053 0.96133 0.92769 1.20436 1.02218 1.00172 0.86919 1.23075 1.02037 0.93677 1.02685 1.23071 0.92430 1.03642 1.02324 1.43682 1.36131 1.26443 1.04004 0.71887 1.74623 1.15567 1.14121 0.96684 0.93059 0.95053 0.91254 0.86828 0.89244 0.83402 0.83929 0.78738 0.82819 0.85443 0.87949 0.88721 0.88766 0.87966 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.47 13.29 55.43 0.74 -23.73 16 2 C 0.07 1.84 5.46 -17.82 -0.10 1.74 16 3 Si 0.89 20.91 29.54 -169.99 -5.02 15.88 16 4 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 5 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 6 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 7 C -0.51 -13.42 8.40 -34.44 -0.29 -13.71 16 8 H 0.05 1.50 7.81 -52.49 -0.41 1.09 16 9 C 0.23 5.66 4.74 -5.19 -0.02 5.64 16 10 N -0.58 -13.03 2.47 -177.61 -0.44 -13.47 16 11 C 0.20 3.79 5.89 -5.20 -0.03 3.76 16 12 C -0.01 -0.26 6.87 -35.63 -0.24 -0.51 16 13 C -0.20 -3.48 10.81 -39.70 -0.43 -3.91 16 14 C -0.22 -3.24 10.91 -39.70 -0.43 -3.68 16 15 C -0.05 -0.78 12.09 29.42 0.36 -0.42 16 16 O -0.17 -3.07 10.65 5.71 0.06 -3.00 16 17 C 0.60 13.96 7.58 -12.39 -0.09 13.87 16 18 O -0.56 -13.52 16.56 5.31 0.09 -13.43 16 19 C -0.01 -0.31 6.80 -82.76 -0.56 -0.87 16 20 C -0.18 -3.16 10.73 -39.36 -0.42 -3.59 16 21 C 0.02 0.32 6.64 -82.20 -0.55 -0.22 16 22 C -0.08 -0.86 6.26 -91.77 -0.57 -1.43 16 23 C -0.18 -1.65 10.22 -26.73 -0.27 -1.93 16 24 C -0.18 -1.61 10.22 -26.73 -0.27 -1.88 16 25 N -0.39 -6.60 6.80 33.50 0.23 -6.37 16 26 H 0.44 6.22 8.96 -190.45 -1.71 4.51 16 27 N -0.18 -3.76 8.06 33.42 0.27 -3.49 16 28 H 0.26 6.84 8.31 -40.82 -0.34 6.50 16 29 H 0.03 0.80 8.02 -51.93 -0.42 0.38 16 30 H 0.07 1.81 5.38 -51.93 -0.28 1.53 16 31 H 0.11 2.00 8.03 -51.93 -0.42 1.58 16 32 H 0.09 1.70 7.52 -51.93 -0.39 1.31 16 33 H 0.15 2.40 8.06 -52.49 -0.42 1.98 16 34 H 0.14 1.72 8.06 -52.49 -0.42 1.30 16 35 H 0.20 2.02 8.06 -52.49 -0.42 1.60 16 36 H 0.15 2.52 8.06 -52.48 -0.42 2.10 16 37 H 0.13 1.21 8.14 -51.93 -0.42 0.78 16 38 H 0.10 0.79 8.14 -51.93 -0.42 0.36 16 39 H 0.09 0.94 8.14 -51.93 -0.42 0.51 16 40 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 41 H 0.10 0.76 8.14 -51.93 -0.42 0.33 16 LS Contribution 359.29 15.07 5.41 5.41 Total: -1.00 -32.53 359.29 -9.16 -41.69 By element: Atomic # 1 Polarization: 14.19 SS G_CDS: -6.56 Total: 7.63 kcal Atomic # 6 Polarization: -3.19 SS G_CDS: -3.94 Total: -7.13 kcal Atomic # 7 Polarization: -47.85 SS G_CDS: 0.79 Total: -47.06 kcal Atomic # 8 Polarization: -16.58 SS G_CDS: 0.15 Total: -16.43 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.02 Total: 15.88 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -32.53 -9.16 -41.69 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299567939.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.287 kcal (2) G-P(sol) polarization free energy of solvation -32.531 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 105.756 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.163 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.695 kcal (6) G-S(sol) free energy of system = (1) + (5) 96.593 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds