Wall clock time and date at job start Tue Mar 31 2020 10:50:41
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31521 * 1
3 3 Si 1.86807 * 119.99466 * 2 1
4 4 H 1.48492 * 109.47261 * 270.00072 * 3 2 1
5 5 H 1.48505 * 109.46917 * 30.00069 * 3 2 1
6 6 H 1.48494 * 109.46752 * 149.99844 * 3 2 1
7 7 C 1.37870 * 120.00558 * 180.02562 * 2 1 3
8 8 H 1.07997 * 120.00413 * 180.02562 * 7 2 1
9 9 C 1.50706 * 119.99867 * 359.97438 * 7 2 1
10 10 N 1.46499 * 109.47032 * 180.02562 * 9 7 2
11 11 C 1.46497 * 119.99988 * 263.34409 * 10 9 7
12 12 C 1.50696 * 109.47023 * 265.12834 * 11 10 9
13 13 C 1.34516 * 125.78746 * 90.00419 * 12 11 10
14 14 C 1.41389 * 106.84203 * 179.97438 * 13 12 11
15 15 C 1.34518 * 106.83809 * 359.97438 * 14 13 12
16 16 O 1.34299 * 108.42027 * 359.73821 * 15 14 13
17 17 C 1.34780 * 119.99949 * 83.34685 * 10 9 7
18 18 O 1.21565 * 119.99809 * 183.94268 * 17 10 9
19 19 C 1.47708 * 119.99877 * 3.93778 * 17 10 9
20 20 C 1.41505 * 126.51773 * 173.62421 * 19 17 10
21 21 C 1.35361 * 105.50435 * 179.97438 * 20 19 17
22 22 C 1.50707 * 126.38496 * 179.97438 * 21 20 19
23 23 C 1.53000 * 117.51652 * 146.28914 * 22 21 20
24 24 C 1.52999 * 60.00216 * 107.48067 * 23 22 21
25 25 N 1.35037 * 107.22827 * 0.26580 * 21 20 19
26 26 H 0.96996 * 124.88239 * 179.71615 * 25 21 20
27 27 N 1.28462 * 110.22886 * 359.54790 * 25 21 20
28 28 H 0.96998 * 120.00531 * 0.02562 * 1 2 3
29 29 H 1.09000 * 109.47210 * 59.99762 * 9 7 2
30 30 H 1.08999 * 109.46715 * 300.00054 * 9 7 2
31 31 H 1.08996 * 109.46947 * 25.13032 * 11 10 9
32 32 H 1.09001 * 109.46921 * 145.13132 * 11 10 9
33 33 H 1.07995 * 126.58261 * 359.95585 * 13 12 11
34 34 H 1.08001 * 126.58354 * 179.97438 * 14 13 12
35 35 H 1.07997 * 125.78808 * 180.02562 * 15 14 13
36 36 H 1.08007 * 127.24570 * 0.02562 * 20 19 17
37 37 H 1.09003 * 115.54985 * 0.58564 * 22 21 20
38 38 H 1.08999 * 117.49719 * 214.97726 * 23 22 21
39 39 H 1.09003 * 117.49873 * 359.97438 * 23 22 21
40 40 H 1.08997 * 117.50013 * 252.51148 * 24 23 22
41 41 H 1.08995 * 117.51815 * 107.48090 * 24 23 22
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3152 0.0000 0.0000
3 14 2.2491 1.6179 0.0000
4 1 2.4965 2.0466 -1.4000
5 1 1.4464 2.6527 0.7001
6 1 3.5466 1.4404 0.7001
7 6 2.0047 -1.1939 -0.0005
8 1 3.0846 -1.1939 -0.0001
9 6 1.2512 -2.4991 -0.0005
10 7 2.2033 -3.6126 -0.0005
11 6 2.5676 -4.2648 -1.2607
12 6 1.6971 -5.4772 -1.4687
13 6 0.5129 -5.4952 -2.1066
14 6 0.0476 -6.8298 -2.0691
15 6 0.9756 -7.5476 -1.4111
16 8 1.9752 -6.7243 -1.0551
17 6 2.7441 -4.0368 1.1588
18 8 3.5875 -4.9123 1.1517
19 6 2.3120 -3.4380 2.4381
20 6 2.6895 -3.8593 3.7351
21 6 2.0540 -3.0211 4.5871
22 6 2.1278 -3.0512 6.0921
23 6 2.0536 -1.7131 6.8303
24 6 0.8645 -2.6750 6.8690
25 7 1.3365 -2.1571 3.8373
26 1 0.7787 -1.4467 4.1908
27 7 1.5018 -2.4093 2.5886
28 1 -0.4851 0.8400 -0.0004
29 1 0.6242 -2.5567 -0.8903
30 1 0.6250 -2.5570 0.8897
31 1 2.4228 -3.5675 -2.0858
32 1 3.6132 -4.5705 -1.2225
33 1 0.0132 -4.6520 -2.5601
34 1 -0.8756 -7.2016 -2.4884
35 1 0.9274 -8.6072 -1.2079
36 1 3.3470 -4.6770 3.9913
37 1 2.7676 -3.8252 6.5160
38 1 2.6448 -1.6067 7.7398
39 1 1.9519 -0.8107 6.2274
40 1 -0.0199 -2.4055 6.2916
41 1 0.6730 -3.2017 7.8038
RHF calculation, no. of doubly occupied orbitals= 58
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000299567939.mol2 41
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 10:50:41
Heat of formation + Delta-G solvation = 96.592549 kcal
Electronic energy + Delta-G solvation = -26207.916674 eV
Core-core repulsion = 22478.956656 eV
Total energy + Delta-G solvation = -3728.960018 eV
No. of doubly occupied orbitals = 58
Molecular weight
(most abundant/longest-lived isotopes) = 315.137 amu
Computer time = 0.59 seconds
Orbital eigenvalues (eV)
-42.18918 -42.10247 -38.68562 -37.13930 -35.09945 -32.74615 -32.41218 -31.42670
-30.51214 -29.62858 -27.16745 -25.74289 -23.59010 -22.99959 -22.55821 -22.10470
-21.29393 -20.57840 -20.12382 -18.12933 -17.44563 -17.04516 -16.42907 -16.01118
-15.80499 -15.45209 -15.07282 -14.87951 -14.41399 -14.36402 -13.87215 -13.53902
-13.10414 -12.78116 -12.43278 -12.38780 -12.35084 -12.09729 -12.05581 -11.77503
-11.54835 -11.27378 -11.04600 -10.90385 -10.77795 -10.58128 -10.17239 -9.73346
-9.59622 -9.52483 -9.30762 -8.79403 -8.45425 -8.28446 -8.11956 -7.73685
-6.03382 -4.04958 2.06981 2.28170 2.48186 2.94894 3.26540 3.33545
3.35163 3.38620 3.42126 3.84040 4.02868 4.22190 4.42153 4.48970
4.66848 4.82871 5.03488 5.11821 5.24004 5.31819 5.37660 5.40198
5.43343 5.60895 5.69898 5.80603 5.88053 5.96708 6.07947 6.10639
6.15377 6.30569 6.33459 6.46701 6.76240 6.85795 6.88354 7.36926
7.50514 7.56970 7.76495 7.89624 8.24251 8.29371 8.54127 8.95584
9.05584 9.57644 11.04545
Molecular weight = 315.14amu
Principal moments of inertia in cm(-1)
A = 0.009024 B = 0.005635 C = 0.003871
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 3102.255892 B = 4967.713133 C = 7230.980859
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.891 5.891
2 C 0.069 3.931
3 Si 0.887 3.113
4 H -0.281 1.281
5 H -0.288 1.288
6 H -0.276 1.276
7 C -0.509 4.509
8 H 0.055 0.945
9 C 0.231 3.769
10 N -0.583 5.583
11 C 0.196 3.804
12 C -0.014 4.014
13 C -0.203 4.203
14 C -0.217 4.217
15 C -0.052 4.052
16 O -0.165 6.165
17 C 0.603 3.397
18 O -0.560 6.560
19 C -0.014 4.014
20 C -0.175 4.175
21 C 0.021 3.979
22 C -0.078 4.078
23 C -0.177 4.177
24 C -0.177 4.177
25 N -0.388 5.388
26 H 0.438 0.562
27 N -0.175 5.175
28 H 0.260 0.740
29 H 0.031 0.969
30 H 0.070 0.930
31 H 0.114 0.886
32 H 0.089 0.911
33 H 0.148 0.852
34 H 0.143 0.857
35 H 0.196 0.804
36 H 0.154 0.846
37 H 0.128 0.872
38 H 0.102 0.898
39 H 0.094 0.906
40 H 0.094 0.906
41 H 0.102 0.898
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -0.297 -7.616 7.511 10.700
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.531 5.531
2 C -0.132 4.132
3 Si 0.715 3.285
4 H -0.207 1.207
5 H -0.214 1.214
6 H -0.201 1.201
7 C -0.549 4.549
8 H 0.073 0.927
9 C 0.111 3.889
10 N -0.313 5.313
11 C 0.073 3.927
12 C -0.066 4.066
13 C -0.223 4.223
14 C -0.237 4.237
15 C -0.121 4.121
16 O -0.060 6.060
17 C 0.391 3.609
18 O -0.438 6.438
19 C -0.175 4.175
20 C -0.203 4.203
21 C -0.103 4.103
22 C -0.097 4.097
23 C -0.215 4.215
24 C -0.215 4.215
25 N -0.103 5.103
26 H 0.281 0.719
27 N -0.010 5.010
28 H 0.069 0.931
29 H 0.049 0.951
30 H 0.087 0.913
31 H 0.132 0.868
32 H 0.108 0.892
33 H 0.166 0.834
34 H 0.161 0.839
35 H 0.213 0.787
36 H 0.172 0.828
37 H 0.146 0.854
38 H 0.121 0.879
39 H 0.113 0.887
40 H 0.112 0.888
41 H 0.120 0.880
Dipole moment (debyes) X Y Z Total
from point charges -0.348 -7.273 7.014 10.110
hybrid contribution 0.199 0.915 0.509 1.066
sum -0.149 -6.358 7.524 9.851
Atomic orbital electron populations
1.69935 1.05737 1.26499 1.50924 1.24768 0.94658 0.98486 0.95321
0.86683 0.79903 0.83762 0.78146 1.20696 1.21381 1.20136 1.21313
0.93046 0.90355 1.50145 0.92718 1.19871 0.87609 0.81782 0.99594
1.48208 1.45013 1.33915 1.04115 1.19730 0.97122 0.87418 0.88470
1.23242 0.98342 0.84800 1.00205 1.21657 0.96580 0.97989 1.06110
1.21779 1.01760 0.94099 1.06023 1.23953 0.88706 0.96431 1.02998
1.84114 1.41812 1.17723 1.62353 1.16970 0.80731 0.80947 0.82293
1.90695 1.33327 1.32719 1.87063 1.21803 1.03181 0.97927 0.94569
1.21286 1.05492 1.03122 0.90436 1.20353 1.01053 0.96133 0.92769
1.20436 1.02218 1.00172 0.86919 1.23075 1.02037 0.93677 1.02685
1.23071 0.92430 1.03642 1.02324 1.43682 1.36131 1.26443 1.04004
0.71887 1.74623 1.15567 1.14121 0.96684 0.93059 0.95053 0.91254
0.86828 0.89244 0.83402 0.83929 0.78738 0.82819 0.85443 0.87949
0.88721 0.88766 0.87966
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.89 -24.47 13.29 55.43 0.74 -23.73 16
2 C 0.07 1.84 5.46 -17.82 -0.10 1.74 16
3 Si 0.89 20.91 29.54 -169.99 -5.02 15.88 16
4 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16
5 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16
6 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16
7 C -0.51 -13.42 8.40 -34.44 -0.29 -13.71 16
8 H 0.05 1.50 7.81 -52.49 -0.41 1.09 16
9 C 0.23 5.66 4.74 -5.19 -0.02 5.64 16
10 N -0.58 -13.03 2.47 -177.61 -0.44 -13.47 16
11 C 0.20 3.79 5.89 -5.20 -0.03 3.76 16
12 C -0.01 -0.26 6.87 -35.63 -0.24 -0.51 16
13 C -0.20 -3.48 10.81 -39.70 -0.43 -3.91 16
14 C -0.22 -3.24 10.91 -39.70 -0.43 -3.68 16
15 C -0.05 -0.78 12.09 29.42 0.36 -0.42 16
16 O -0.17 -3.07 10.65 5.71 0.06 -3.00 16
17 C 0.60 13.96 7.58 -12.39 -0.09 13.87 16
18 O -0.56 -13.52 16.56 5.31 0.09 -13.43 16
19 C -0.01 -0.31 6.80 -82.76 -0.56 -0.87 16
20 C -0.18 -3.16 10.73 -39.36 -0.42 -3.59 16
21 C 0.02 0.32 6.64 -82.20 -0.55 -0.22 16
22 C -0.08 -0.86 6.26 -91.77 -0.57 -1.43 16
23 C -0.18 -1.65 10.22 -26.73 -0.27 -1.93 16
24 C -0.18 -1.61 10.22 -26.73 -0.27 -1.88 16
25 N -0.39 -6.60 6.80 33.50 0.23 -6.37 16
26 H 0.44 6.22 8.96 -190.45 -1.71 4.51 16
27 N -0.18 -3.76 8.06 33.42 0.27 -3.49 16
28 H 0.26 6.84 8.31 -40.82 -0.34 6.50 16
29 H 0.03 0.80 8.02 -51.93 -0.42 0.38 16
30 H 0.07 1.81 5.38 -51.93 -0.28 1.53 16
31 H 0.11 2.00 8.03 -51.93 -0.42 1.58 16
32 H 0.09 1.70 7.52 -51.93 -0.39 1.31 16
33 H 0.15 2.40 8.06 -52.49 -0.42 1.98 16
34 H 0.14 1.72 8.06 -52.49 -0.42 1.30 16
35 H 0.20 2.02 8.06 -52.49 -0.42 1.60 16
36 H 0.15 2.52 8.06 -52.48 -0.42 2.10 16
37 H 0.13 1.21 8.14 -51.93 -0.42 0.78 16
38 H 0.10 0.79 8.14 -51.93 -0.42 0.36 16
39 H 0.09 0.94 8.14 -51.93 -0.42 0.51 16
40 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16
41 H 0.10 0.76 8.14 -51.93 -0.42 0.33 16
LS Contribution 359.29 15.07 5.41 5.41
Total: -1.00 -32.53 359.29 -9.16 -41.69
By element:
Atomic # 1 Polarization: 14.19 SS G_CDS: -6.56 Total: 7.63 kcal
Atomic # 6 Polarization: -3.19 SS G_CDS: -3.94 Total: -7.13 kcal
Atomic # 7 Polarization: -47.85 SS G_CDS: 0.79 Total: -47.06 kcal
Atomic # 8 Polarization: -16.58 SS G_CDS: 0.15 Total: -16.43 kcal
Atomic # 14 Polarization: 20.91 SS G_CDS: -5.02 Total: 15.88 kcal
Total LS contribution 5.41 Total: 5.41 kcal
Total: -32.53 -9.16 -41.69 kcal
The number of atoms in the molecule is 41
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000299567939.mol2 41
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 138.287 kcal
(2) G-P(sol) polarization free energy of solvation -32.531 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 105.756 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.163 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.695 kcal
(6) G-S(sol) free energy of system = (1) + (5) 96.593 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.59 seconds