Wall clock time and date at job start Tue Mar 31 2020 10:50:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86807 * 119.99466 * 2 1 4 4 H 1.48492 * 109.47261 * 270.00072 * 3 2 1 5 5 H 1.48505 * 109.46917 * 30.00069 * 3 2 1 6 6 H 1.48494 * 109.46752 * 149.99844 * 3 2 1 7 7 C 1.37870 * 120.00558 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00413 * 180.02562 * 7 2 1 9 9 C 1.50706 * 119.99867 * 359.97438 * 7 2 1 10 10 N 1.46499 * 109.47032 * 180.02562 * 9 7 2 11 11 C 1.46497 * 119.99988 * 263.34409 * 10 9 7 12 12 C 1.50696 * 109.47023 * 265.12834 * 11 10 9 13 13 C 1.34516 * 125.78746 * 90.00419 * 12 11 10 14 14 C 1.41389 * 106.84203 * 179.97438 * 13 12 11 15 15 C 1.34518 * 106.83809 * 359.97438 * 14 13 12 16 16 O 1.34299 * 108.42027 * 359.73821 * 15 14 13 17 17 C 1.34780 * 119.99949 * 83.34685 * 10 9 7 18 18 O 1.21565 * 119.99809 * 183.94268 * 17 10 9 19 19 C 1.47708 * 119.99877 * 3.93778 * 17 10 9 20 20 C 1.41505 * 126.51773 * 173.62421 * 19 17 10 21 21 C 1.35361 * 105.50435 * 179.97438 * 20 19 17 22 22 C 1.50707 * 126.38496 * 179.97438 * 21 20 19 23 23 C 1.53000 * 117.51652 * 146.28914 * 22 21 20 24 24 C 1.52999 * 60.00216 * 107.48067 * 23 22 21 25 25 N 1.35037 * 107.22827 * 0.26580 * 21 20 19 26 26 H 0.96996 * 124.88239 * 179.71615 * 25 21 20 27 27 N 1.28462 * 110.22886 * 359.54790 * 25 21 20 28 28 H 0.96998 * 120.00531 * 0.02562 * 1 2 3 29 29 H 1.09000 * 109.47210 * 59.99762 * 9 7 2 30 30 H 1.08999 * 109.46715 * 300.00054 * 9 7 2 31 31 H 1.08996 * 109.46947 * 25.13032 * 11 10 9 32 32 H 1.09001 * 109.46921 * 145.13132 * 11 10 9 33 33 H 1.07995 * 126.58261 * 359.95585 * 13 12 11 34 34 H 1.08001 * 126.58354 * 179.97438 * 14 13 12 35 35 H 1.07997 * 125.78808 * 180.02562 * 15 14 13 36 36 H 1.08007 * 127.24570 * 0.02562 * 20 19 17 37 37 H 1.09003 * 115.54985 * 0.58564 * 22 21 20 38 38 H 1.08999 * 117.49719 * 214.97726 * 23 22 21 39 39 H 1.09003 * 117.49873 * 359.97438 * 23 22 21 40 40 H 1.08997 * 117.50013 * 252.51148 * 24 23 22 41 41 H 1.08995 * 117.51815 * 107.48090 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6179 0.0000 4 1 2.4965 2.0466 -1.4000 5 1 1.4464 2.6527 0.7001 6 1 3.5466 1.4404 0.7001 7 6 2.0047 -1.1939 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2512 -2.4991 -0.0005 10 7 2.2033 -3.6126 -0.0005 11 6 2.5676 -4.2648 -1.2607 12 6 1.6971 -5.4772 -1.4687 13 6 0.5129 -5.4952 -2.1066 14 6 0.0476 -6.8298 -2.0691 15 6 0.9756 -7.5476 -1.4111 16 8 1.9752 -6.7243 -1.0551 17 6 2.7441 -4.0368 1.1588 18 8 3.5875 -4.9123 1.1517 19 6 2.3120 -3.4380 2.4381 20 6 2.6895 -3.8593 3.7351 21 6 2.0540 -3.0211 4.5871 22 6 2.1278 -3.0512 6.0921 23 6 2.0536 -1.7131 6.8303 24 6 0.8645 -2.6750 6.8690 25 7 1.3365 -2.1571 3.8373 26 1 0.7787 -1.4467 4.1908 27 7 1.5018 -2.4093 2.5886 28 1 -0.4851 0.8400 -0.0004 29 1 0.6242 -2.5567 -0.8903 30 1 0.6250 -2.5570 0.8897 31 1 2.4228 -3.5675 -2.0858 32 1 3.6132 -4.5705 -1.2225 33 1 0.0132 -4.6520 -2.5601 34 1 -0.8756 -7.2016 -2.4884 35 1 0.9274 -8.6072 -1.2079 36 1 3.3470 -4.6770 3.9913 37 1 2.7676 -3.8252 6.5160 38 1 2.6448 -1.6067 7.7398 39 1 1.9519 -0.8107 6.2274 40 1 -0.0199 -2.4055 6.2916 41 1 0.6730 -3.2017 7.8038 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000299567939.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:50:41 Heat of formation + Delta-G solvation = 77.433404 kcal Electronic energy + Delta-G solvation = -26208.747477 eV Core-core repulsion = 22478.956656 eV Total energy + Delta-G solvation = -3729.790821 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.137 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -43.60612 -43.42945 -40.41283 -38.01592 -36.90110 -34.61220 -33.85279 -32.92579 -31.91740 -31.03456 -29.05932 -27.26128 -25.26397 -24.42489 -23.61159 -23.26039 -22.59459 -21.90175 -21.45305 -19.74804 -18.78775 -18.64806 -18.09550 -17.48410 -17.39141 -16.66987 -16.54394 -16.27949 -16.18776 -15.85330 -15.14514 -14.97275 -14.57706 -14.25210 -14.19447 -13.86241 -13.68942 -13.55669 -13.34865 -13.10761 -12.96012 -12.72104 -12.53994 -12.44878 -12.12670 -11.96364 -11.70446 -11.42245 -11.22922 -11.07643 -10.81125 -10.46861 -10.28262 -9.65390 -9.57846 -9.38894 -8.08603 -6.16255 0.69340 0.78431 1.12267 1.38420 1.41074 1.49637 1.67905 2.01812 2.13852 2.37143 2.53138 2.57068 3.03835 3.23423 3.44369 3.61352 3.82246 3.84095 4.04995 4.07597 4.17253 4.20202 4.28920 4.44103 4.55026 4.69739 4.76037 4.87092 4.88819 4.94085 5.00842 5.04190 5.19518 5.20637 5.20690 5.34483 5.48603 5.64152 5.77801 5.84818 6.19449 6.24889 6.26393 6.48856 6.84256 7.06832 7.30250 7.49654 8.98655 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.009024 B = 0.005635 C = 0.003871 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3102.255892 B = 4967.713133 C = 7230.980859 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C 0.034 3.966 3 Si 0.943 3.057 4 H -0.275 1.275 5 H -0.280 1.280 6 H -0.282 1.282 7 C -0.513 4.513 8 H 0.038 0.962 9 C 0.249 3.751 10 N -0.585 5.585 11 C 0.194 3.806 12 C -0.045 4.045 13 C -0.204 4.204 14 C -0.223 4.223 15 C -0.044 4.044 16 O -0.190 6.190 17 C 0.594 3.406 18 O -0.580 6.580 19 C -0.043 4.043 20 C -0.197 4.197 21 C 0.052 3.948 22 C -0.099 4.099 23 C -0.168 4.168 24 C -0.163 4.163 25 N -0.380 5.380 26 H 0.448 0.552 27 N -0.216 5.216 28 H 0.263 0.737 29 H 0.017 0.983 30 H 0.058 0.942 31 H 0.122 0.878 32 H 0.085 0.915 33 H 0.150 0.850 34 H 0.175 0.825 35 H 0.240 0.760 36 H 0.165 0.835 37 H 0.148 0.852 38 H 0.126 0.874 39 H 0.086 0.914 40 H 0.089 0.911 41 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.865 -7.869 9.202 12.138 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.166 4.166 3 Si 0.770 3.230 4 H -0.201 1.201 5 H -0.205 1.205 6 H -0.208 1.208 7 C -0.552 4.552 8 H 0.056 0.944 9 C 0.129 3.871 10 N -0.314 5.314 11 C 0.071 3.929 12 C -0.096 4.096 13 C -0.225 4.225 14 C -0.242 4.242 15 C -0.111 4.111 16 O -0.086 6.086 17 C 0.382 3.618 18 O -0.460 6.460 19 C -0.203 4.203 20 C -0.226 4.226 21 C -0.073 4.073 22 C -0.118 4.118 23 C -0.205 4.205 24 C -0.200 4.200 25 N -0.096 5.096 26 H 0.294 0.706 27 N -0.052 5.052 28 H 0.072 0.928 29 H 0.035 0.965 30 H 0.075 0.925 31 H 0.140 0.860 32 H 0.104 0.896 33 H 0.168 0.832 34 H 0.192 0.808 35 H 0.256 0.744 36 H 0.183 0.817 37 H 0.165 0.835 38 H 0.144 0.856 39 H 0.105 0.895 40 H 0.107 0.893 41 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -0.928 -7.515 8.684 11.521 hybrid contribution 0.328 0.933 0.047 0.990 sum -0.600 -6.582 8.731 10.950 Atomic orbital electron populations 1.70017 1.06716 1.27283 1.51417 1.25330 0.95329 1.01003 0.94955 0.85810 0.78460 0.80537 0.78237 1.20098 1.20522 1.20787 1.21331 0.92190 0.91464 1.50240 0.94393 1.19485 0.87507 0.81946 0.98176 1.48208 1.44474 1.33584 1.05147 1.19790 0.97263 0.88254 0.87546 1.23003 0.99226 0.84905 1.02493 1.21899 0.95984 0.99413 1.05159 1.22148 1.03037 0.92848 1.06164 1.24899 0.87232 0.97824 1.01161 1.84088 1.43457 1.18013 1.63077 1.17321 0.80533 0.80854 0.83056 1.90651 1.34223 1.33657 1.87497 1.21863 1.04448 0.98877 0.95104 1.21503 1.06950 1.04579 0.89523 1.20893 0.98035 0.93606 0.94747 1.20642 1.04842 1.02453 0.83881 1.23182 1.02209 0.92308 1.02807 1.23185 0.91464 1.02855 1.02509 1.43681 1.35983 1.26724 1.03209 0.70605 1.74482 1.16778 1.14995 0.98921 0.92835 0.96467 0.92499 0.85958 0.89632 0.83188 0.80778 0.74404 0.81738 0.83466 0.85609 0.89517 0.89257 0.85491 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -50.61 13.29 21.45 0.28 -50.32 16 2 C 0.03 1.80 5.46 84.65 0.46 2.26 16 3 Si 0.94 43.09 29.54 68.60 2.03 45.12 16 4 H -0.28 -12.29 7.11 99.48 0.71 -11.58 16 5 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 6 H -0.28 -13.11 7.11 99.48 0.71 -12.40 16 7 C -0.51 -27.80 8.40 25.60 0.21 -27.59 16 8 H 0.04 2.15 7.81 -2.91 -0.02 2.12 16 9 C 0.25 12.73 4.74 85.64 0.41 13.14 16 10 N -0.58 -27.41 2.47 -834.09 -2.06 -29.48 16 11 C 0.19 7.88 5.89 85.63 0.50 8.39 16 12 C -0.05 -1.73 6.87 24.83 0.17 -1.56 16 13 C -0.20 -7.02 10.81 22.19 0.24 -6.78 16 14 C -0.22 -6.28 10.91 22.19 0.24 -6.04 16 15 C -0.04 -1.22 12.09 66.97 0.81 -0.41 16 16 O -0.19 -7.10 10.65 -2.48 -0.03 -7.13 16 17 C 0.59 28.75 7.58 86.75 0.66 29.40 16 18 O -0.58 -29.20 16.56 -3.92 -0.06 -29.26 16 19 C -0.04 -1.94 6.80 42.46 0.29 -1.65 16 20 C -0.20 -7.21 10.73 22.41 0.24 -6.96 16 21 C 0.05 1.56 6.64 41.40 0.28 1.84 16 22 C -0.10 -1.91 6.26 -11.54 -0.07 -1.99 16 23 C -0.17 -2.59 10.22 30.59 0.31 -2.28 16 24 C -0.16 -2.42 10.22 30.60 0.31 -2.11 16 25 N -0.38 -12.91 6.80 -47.92 -0.33 -13.23 16 26 H 0.45 12.55 8.96 -220.00 -1.97 10.58 16 27 N -0.22 -9.53 8.06 -48.17 -0.39 -9.92 16 28 H 0.26 13.81 8.31 -92.71 -0.77 13.04 16 29 H 0.02 0.92 8.02 -2.39 -0.02 0.90 16 30 H 0.06 3.10 5.38 -2.39 -0.01 3.08 16 31 H 0.12 4.56 8.03 -2.39 -0.02 4.54 16 32 H 0.09 3.46 7.52 -2.39 -0.02 3.44 16 33 H 0.15 4.95 8.06 -2.91 -0.02 4.93 16 34 H 0.17 3.68 8.06 -2.91 -0.02 3.66 16 35 H 0.24 4.14 8.06 -2.91 -0.02 4.11 16 36 H 0.17 5.44 8.06 -2.91 -0.02 5.42 16 37 H 0.15 2.32 8.14 -2.39 -0.02 2.30 16 38 H 0.13 1.41 8.14 -2.39 -0.02 1.39 16 39 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 40 H 0.09 1.45 8.14 -2.39 -0.02 1.43 16 41 H 0.13 1.32 8.14 -2.39 -0.02 1.30 16 Total: -1.00 -72.05 359.29 3.61 -68.45 By element: Atomic # 1 Polarization: 29.01 SS G_CDS: -0.90 Total: 28.10 kcal Atomic # 6 Polarization: -7.40 SS G_CDS: 5.06 Total: -2.34 kcal Atomic # 7 Polarization: -100.46 SS G_CDS: -2.49 Total: -102.95 kcal Atomic # 8 Polarization: -36.30 SS G_CDS: -0.09 Total: -36.39 kcal Atomic # 14 Polarization: 43.09 SS G_CDS: 2.03 Total: 45.12 kcal Total: -72.05 3.61 -68.45 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299567939.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 145.883 kcal (2) G-P(sol) polarization free energy of solvation -72.054 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.828 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.605 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.449 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.433 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds