Wall clock time and date at job start Tue Mar 31 2020 11:08:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.37708 * 120.15754 * 2 1 4 4 C 1.38845 * 120.81946 * 180.02562 * 3 2 1 5 5 C 1.37804 * 120.56495 * 359.95059 * 4 3 2 6 6 C 1.39291 * 119.51961 * 0.02562 * 5 4 3 7 7 C 1.39594 * 120.15900 * 179.97438 * 2 1 3 8 8 N 1.35663 * 121.64593 * 0.02562 * 7 2 1 9 9 C 1.29833 * 121.61937 * 179.97438 * 8 7 2 10 10 N 1.35868 * 123.36889 * 359.97438 * 9 8 7 11 11 C 1.46494 * 119.69484 * 180.02562 * 10 9 8 12 12 C 1.53003 * 109.47210 * 269.97487 * 11 10 9 13 13 C 1.50695 * 109.47444 * 180.02562 * 12 11 10 14 14 O 1.21292 * 120.00178 * 0.02562 * 13 12 11 15 15 N 1.34774 * 119.99987 * 180.02562 * 13 12 11 16 16 C 1.46496 * 120.00269 * 359.97438 * 15 13 12 17 17 C 1.37097 * 119.99891 * 180.02562 * 15 13 12 18 18 H 1.07999 * 120.00183 * 322.82205 * 17 15 13 19 19 C 1.38960 * 120.00010 * 142.82475 * 17 15 13 20 20 N 1.31410 * 119.99520 * 158.40658 * 19 17 15 21 21 Si 1.86795 * 119.99860 * 338.40630 * 19 17 15 22 22 H 1.48497 * 109.47049 * 95.72168 * 21 19 17 23 23 H 1.48497 * 109.47138 * 215.71706 * 21 19 17 24 24 H 1.48505 * 109.47263 * 335.72145 * 21 19 17 25 25 C 1.35345 * 120.60672 * 0.02562 * 10 9 8 26 26 O 1.21726 * 121.29549 * 179.97438 * 25 10 9 27 27 H 1.08999 * 109.47179 * 270.00853 * 1 2 3 28 28 H 1.09004 * 109.46754 * 30.00192 * 1 2 3 29 29 H 1.08997 * 109.47187 * 149.99816 * 1 2 3 30 30 H 1.08004 * 119.59194 * 0.02562 * 3 2 1 31 31 H 1.07993 * 119.71601 * 179.97438 * 4 3 2 32 32 H 1.08008 * 120.23855 * 180.02562 * 5 4 3 33 33 H 1.08002 * 118.32212 * 179.97438 * 9 8 7 34 34 H 1.08996 * 109.47360 * 29.97935 * 11 10 9 35 35 H 1.09002 * 109.46830 * 149.97973 * 11 10 9 36 36 H 1.09004 * 109.47027 * 300.00385 * 12 11 10 37 37 H 1.09002 * 109.46455 * 59.99804 * 12 11 10 38 38 H 1.08997 * 109.47327 * 85.13415 * 16 15 13 39 39 H 1.08997 * 109.47492 * 205.13970 * 16 15 13 40 40 H 1.09003 * 109.47042 * 325.13586 * 16 15 13 41 41 H 0.97005 * 119.99493 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1988 1.1907 0.0000 4 6 3.5872 1.2067 -0.0005 5 6 4.3016 0.0283 -0.0001 6 6 3.6209 -1.1869 0.0004 7 6 2.2083 -1.2070 0.0005 8 7 1.5673 -2.4026 0.0006 9 6 2.2201 -3.5249 0.0006 10 7 3.5767 -3.6004 0.0000 11 6 4.2306 -4.9113 -0.0005 12 6 4.4594 -5.3677 1.4419 13 6 5.1326 -6.7159 1.4414 14 8 5.4034 -7.2582 0.3908 15 7 5.4339 -7.3190 2.6084 16 6 5.1075 -6.6638 3.8773 17 6 6.0469 -8.5454 2.6079 18 1 5.7828 -9.2808 1.8625 19 6 7.0080 -8.8421 3.5667 20 7 7.2876 -10.0942 3.8510 21 14 7.9024 -7.4611 4.4511 22 1 7.2291 -7.1845 5.7455 23 1 9.3098 -7.8633 4.7013 24 1 7.8792 -6.2376 3.6098 25 6 4.3295 -2.4755 0.0000 26 8 5.5456 -2.5285 0.0000 27 1 -0.3633 0.0002 1.0277 28 1 -0.3633 0.8900 -0.5139 29 1 -0.3633 -0.8899 -0.5138 30 1 1.6547 2.1237 0.0004 31 1 4.1116 2.1508 -0.0009 32 1 5.3815 0.0470 -0.0001 33 1 1.6560 -4.4459 0.0010 34 1 3.5961 -5.6336 -0.5139 35 1 5.1889 -4.8390 -0.5150 36 1 5.0940 -4.6452 1.9553 37 1 3.5012 -5.4398 1.9563 38 1 4.0766 -6.8909 4.1488 39 1 5.7770 -7.0274 4.6568 40 1 5.2261 -5.5855 3.7705 41 1 7.9583 -10.3013 4.5206 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000299596171.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:08:32 Heat of formation + Delta-G solvation = -6.667983 kcal Electronic energy + Delta-G solvation = -25585.334491 eV Core-core repulsion = 21851.896760 eV Total energy + Delta-G solvation = -3733.437730 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.137 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.76609 -39.19557 -38.60180 -37.58983 -35.15603 -34.58350 -33.19509 -32.16089 -30.77221 -30.45166 -27.24458 -26.61276 -26.02465 -24.71705 -24.41468 -22.67362 -21.21739 -19.06543 -18.90761 -18.61727 -17.42511 -17.11332 -16.15585 -16.02685 -15.64787 -15.38551 -15.35269 -15.04505 -14.70748 -14.16099 -14.14031 -13.75732 -13.66201 -13.38831 -13.01418 -12.73050 -12.62327 -12.54698 -12.31205 -12.17375 -11.98722 -11.89840 -11.85396 -11.68433 -11.10294 -10.79558 -10.43659 -10.32637 -10.12527 -10.07476 -9.97016 -9.22062 -9.14524 -8.64694 -8.16026 -7.82598 -6.45124 -4.02846 0.33657 0.58820 2.01710 2.31793 2.59081 2.99257 3.19318 3.24796 3.61173 3.74314 3.83886 4.03344 4.09811 4.31281 4.43666 4.57345 4.66673 4.87708 4.91773 4.97980 5.03436 5.06409 5.20449 5.32418 5.43015 5.46784 5.51025 5.60076 5.66172 5.79901 5.88459 5.90393 5.99557 6.02297 6.10494 6.15931 6.18941 6.22014 6.46684 6.59065 7.46908 7.58369 7.68701 8.20499 8.41685 8.88221 9.24648 9.66238 10.66670 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.024116 B = 0.003014 C = 0.002901 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1160.791967 B = 9287.315532 C = 9650.779096 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C -0.081 4.081 3 C -0.081 4.081 4 C -0.139 4.139 5 C -0.047 4.047 6 C -0.193 4.193 7 C 0.153 3.847 8 N -0.529 5.529 9 C 0.382 3.618 10 N -0.545 5.545 11 C 0.112 3.888 12 C -0.152 4.152 13 C 0.467 3.533 14 O -0.566 6.566 15 N -0.466 5.466 16 C 0.062 3.938 17 C -0.319 4.319 18 H 0.107 0.893 19 C 0.060 3.940 20 N -0.862 5.862 21 Si 0.879 3.121 22 H -0.275 1.275 23 H -0.286 1.286 24 H -0.264 1.264 25 C 0.543 3.457 26 O -0.503 6.503 27 H 0.070 0.930 28 H 0.062 0.938 29 H 0.078 0.922 30 H 0.131 0.869 31 H 0.131 0.869 32 H 0.136 0.864 33 H 0.202 0.798 34 H 0.106 0.894 35 H 0.108 0.892 36 H 0.087 0.913 37 H 0.086 0.914 38 H 0.053 0.947 39 H 0.067 0.933 40 H 0.053 0.947 41 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.569 21.624 -4.504 25.923 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.082 4.082 3 C -0.100 4.100 4 C -0.157 4.157 5 C -0.067 4.067 6 C -0.198 4.198 7 C 0.044 3.956 8 N -0.250 5.250 9 C 0.095 3.905 10 N -0.266 5.266 11 C -0.010 4.010 12 C -0.193 4.193 13 C 0.255 3.745 14 O -0.449 6.449 15 N -0.188 5.188 16 C -0.081 4.081 17 C -0.446 4.446 18 H 0.125 0.875 19 C -0.146 4.146 20 N -0.498 5.498 21 Si 0.706 3.294 22 H -0.202 1.202 23 H -0.213 1.213 24 H -0.189 1.189 25 C 0.336 3.664 26 O -0.376 6.376 27 H 0.088 0.912 28 H 0.081 0.919 29 H 0.097 0.903 30 H 0.149 0.851 31 H 0.149 0.851 32 H 0.154 0.846 33 H 0.219 0.781 34 H 0.124 0.876 35 H 0.126 0.874 36 H 0.105 0.895 37 H 0.104 0.896 38 H 0.072 0.928 39 H 0.085 0.915 40 H 0.072 0.928 41 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -13.344 21.357 -4.916 25.659 hybrid contribution 1.484 0.604 0.849 1.813 sum -11.860 21.961 -4.068 25.288 Atomic orbital electron populations 1.20635 0.89822 1.03024 1.02522 1.19630 0.96783 0.90454 1.01363 1.21175 0.94201 0.97491 0.97116 1.21138 0.94045 0.98053 1.02466 1.21015 1.00641 0.90471 0.94547 1.20606 0.93972 0.94024 1.11236 1.18638 0.88986 0.92038 0.95923 1.68645 1.35774 0.96382 1.24197 1.24870 0.80547 0.98496 0.86617 1.46849 1.07708 1.09890 1.62189 1.21791 1.01064 0.79966 0.98152 1.21947 1.02326 0.98046 0.97003 1.19865 0.83966 0.85953 0.84762 1.90575 1.57282 1.66397 1.30629 1.43663 1.53579 1.18393 1.03150 1.22020 1.00870 0.96554 0.88676 1.19061 1.19676 0.88635 1.17227 0.87513 1.25369 0.96244 0.96184 0.96832 1.69750 1.31508 1.17582 1.30927 0.86943 0.79586 0.83417 0.79413 1.20250 1.21297 1.18858 1.18466 0.87258 0.83819 0.76896 1.90902 1.12255 1.86477 1.47974 0.91165 0.91861 0.90260 0.85101 0.85090 0.84576 0.78136 0.87613 0.87364 0.89499 0.89589 0.92807 0.91500 0.92818 0.91494 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.79 9.81 36.01 0.35 -0.44 16 2 C -0.08 -0.80 5.91 -104.31 -0.62 -1.42 16 3 C -0.08 -0.67 9.66 -39.55 -0.38 -1.05 16 4 C -0.14 -1.22 10.02 -39.52 -0.40 -1.61 16 5 C -0.05 -0.54 9.68 -39.35 -0.38 -0.92 16 6 C -0.19 -2.55 5.89 -104.78 -0.62 -3.17 16 7 C 0.15 1.85 6.60 -84.51 -0.56 1.30 16 8 N -0.53 -5.98 9.47 -12.01 -0.11 -6.10 16 9 C 0.38 3.87 11.41 -90.17 -1.03 2.84 16 10 N -0.54 -6.95 2.61 -118.86 -0.31 -7.25 16 11 C 0.11 1.58 4.65 -4.04 -0.02 1.57 16 12 C -0.15 -2.42 4.64 -27.88 -0.13 -2.55 16 13 C 0.47 10.32 7.63 -10.99 -0.08 10.23 16 14 O -0.57 -14.47 15.85 5.55 0.09 -14.39 16 15 N -0.47 -11.08 2.59 -122.20 -0.32 -11.39 16 16 C 0.06 1.20 8.78 59.84 0.53 1.73 16 17 C -0.32 -8.95 9.37 -14.93 -0.14 -9.09 16 18 H 0.11 3.35 7.90 -52.49 -0.41 2.93 16 19 C 0.06 1.65 5.29 -17.46 -0.09 1.56 16 20 N -0.86 -24.80 13.96 55.50 0.77 -24.03 16 21 Si 0.88 20.68 24.96 -169.99 -4.24 16.44 16 22 H -0.28 -5.98 6.69 56.52 0.38 -5.60 16 23 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 24 H -0.26 -6.27 7.11 56.52 0.40 -5.86 16 25 C 0.54 8.18 7.66 -12.43 -0.10 8.08 16 26 O -0.50 -9.14 16.32 5.17 0.08 -9.06 16 27 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.06 0.36 8.09 -51.93 -0.42 -0.06 16 29 H 0.08 0.66 7.57 -51.93 -0.39 0.27 16 30 H 0.13 0.70 8.06 -52.48 -0.42 0.28 16 31 H 0.13 0.80 8.06 -52.49 -0.42 0.37 16 32 H 0.14 1.52 7.83 -52.48 -0.41 1.11 16 33 H 0.20 1.23 7.99 -52.49 -0.42 0.81 16 34 H 0.11 1.28 7.95 -51.93 -0.41 0.87 16 35 H 0.11 1.81 7.42 -51.93 -0.39 1.43 16 36 H 0.09 1.43 7.41 -51.93 -0.38 1.04 16 37 H 0.09 1.11 8.11 -51.93 -0.42 0.69 16 38 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 39 H 0.07 1.38 3.42 -51.93 -0.18 1.20 16 40 H 0.05 0.88 6.64 -51.93 -0.34 0.54 16 41 H 0.27 7.30 8.31 -40.82 -0.34 6.97 16 LS Contribution 344.69 15.07 5.19 5.19 Total: -1.00 -34.83 344.69 -7.53 -42.37 By element: Atomic # 1 Polarization: 6.19 SS G_CDS: -5.03 Total: 1.16 kcal Atomic # 6 Polarization: 10.72 SS G_CDS: -3.66 Total: 7.06 kcal Atomic # 7 Polarization: -48.81 SS G_CDS: 0.04 Total: -48.77 kcal Atomic # 8 Polarization: -23.62 SS G_CDS: 0.17 Total: -23.44 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -4.24 Total: 16.44 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -34.83 -7.53 -42.37 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299596171.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.700 kcal (2) G-P(sol) polarization free energy of solvation -34.833 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.866 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.534 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.368 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.668 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds