Wall clock time and date at job start Tue Mar 31 2020 11:08:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.37708 * 120.15754 * 2 1 4 4 C 1.38845 * 120.81946 * 180.02562 * 3 2 1 5 5 C 1.37804 * 120.56495 * 359.95059 * 4 3 2 6 6 C 1.39291 * 119.51961 * 0.02562 * 5 4 3 7 7 C 1.39594 * 120.15900 * 179.97438 * 2 1 3 8 8 N 1.35663 * 121.64593 * 0.02562 * 7 2 1 9 9 C 1.29833 * 121.61937 * 179.97438 * 8 7 2 10 10 N 1.35868 * 123.36889 * 359.97438 * 9 8 7 11 11 C 1.46494 * 119.69484 * 180.02562 * 10 9 8 12 12 C 1.53003 * 109.47210 * 269.97487 * 11 10 9 13 13 C 1.50695 * 109.47444 * 180.02562 * 12 11 10 14 14 O 1.21292 * 120.00178 * 0.02562 * 13 12 11 15 15 N 1.34774 * 119.99987 * 180.02562 * 13 12 11 16 16 C 1.46496 * 120.00269 * 359.97438 * 15 13 12 17 17 C 1.37097 * 119.99891 * 180.02562 * 15 13 12 18 18 H 1.07999 * 120.00183 * 322.82205 * 17 15 13 19 19 C 1.38960 * 120.00010 * 142.82475 * 17 15 13 20 20 N 1.31410 * 119.99520 * 158.40658 * 19 17 15 21 21 Si 1.86795 * 119.99860 * 338.40630 * 19 17 15 22 22 H 1.48497 * 109.47049 * 95.72168 * 21 19 17 23 23 H 1.48497 * 109.47138 * 215.71706 * 21 19 17 24 24 H 1.48505 * 109.47263 * 335.72145 * 21 19 17 25 25 C 1.35345 * 120.60672 * 0.02562 * 10 9 8 26 26 O 1.21726 * 121.29549 * 179.97438 * 25 10 9 27 27 H 1.08999 * 109.47179 * 270.00853 * 1 2 3 28 28 H 1.09004 * 109.46754 * 30.00192 * 1 2 3 29 29 H 1.08997 * 109.47187 * 149.99816 * 1 2 3 30 30 H 1.08004 * 119.59194 * 0.02562 * 3 2 1 31 31 H 1.07993 * 119.71601 * 179.97438 * 4 3 2 32 32 H 1.08008 * 120.23855 * 180.02562 * 5 4 3 33 33 H 1.08002 * 118.32212 * 179.97438 * 9 8 7 34 34 H 1.08996 * 109.47360 * 29.97935 * 11 10 9 35 35 H 1.09002 * 109.46830 * 149.97973 * 11 10 9 36 36 H 1.09004 * 109.47027 * 300.00385 * 12 11 10 37 37 H 1.09002 * 109.46455 * 59.99804 * 12 11 10 38 38 H 1.08997 * 109.47327 * 85.13415 * 16 15 13 39 39 H 1.08997 * 109.47492 * 205.13970 * 16 15 13 40 40 H 1.09003 * 109.47042 * 325.13586 * 16 15 13 41 41 H 0.97005 * 119.99493 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1988 1.1907 0.0000 4 6 3.5872 1.2067 -0.0005 5 6 4.3016 0.0283 -0.0001 6 6 3.6209 -1.1869 0.0004 7 6 2.2083 -1.2070 0.0005 8 7 1.5673 -2.4026 0.0006 9 6 2.2201 -3.5249 0.0006 10 7 3.5767 -3.6004 0.0000 11 6 4.2306 -4.9113 -0.0005 12 6 4.4594 -5.3677 1.4419 13 6 5.1326 -6.7159 1.4414 14 8 5.4034 -7.2582 0.3908 15 7 5.4339 -7.3190 2.6084 16 6 5.1075 -6.6638 3.8773 17 6 6.0469 -8.5454 2.6079 18 1 5.7828 -9.2808 1.8625 19 6 7.0080 -8.8421 3.5667 20 7 7.2876 -10.0942 3.8510 21 14 7.9024 -7.4611 4.4511 22 1 7.2291 -7.1845 5.7455 23 1 9.3098 -7.8633 4.7013 24 1 7.8792 -6.2376 3.6098 25 6 4.3295 -2.4755 0.0000 26 8 5.5456 -2.5285 0.0000 27 1 -0.3633 0.0002 1.0277 28 1 -0.3633 0.8900 -0.5139 29 1 -0.3633 -0.8899 -0.5138 30 1 1.6547 2.1237 0.0004 31 1 4.1116 2.1508 -0.0009 32 1 5.3815 0.0470 -0.0001 33 1 1.6560 -4.4459 0.0010 34 1 3.5961 -5.6336 -0.5139 35 1 5.1889 -4.8390 -0.5150 36 1 5.0940 -4.6452 1.9553 37 1 3.5012 -5.4398 1.9563 38 1 4.0766 -6.8909 4.1488 39 1 5.7770 -7.0274 4.6568 40 1 5.2261 -5.5855 3.7705 41 1 7.9583 -10.3013 4.5206 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000299596171.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:08:31 Heat of formation + Delta-G solvation = -29.082168 kcal Electronic energy + Delta-G solvation = -25586.306443 eV Core-core repulsion = 21851.896760 eV Total energy + Delta-G solvation = -3734.409682 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.137 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.71670 -40.67033 -39.75980 -38.60329 -36.87416 -35.74233 -34.20899 -33.94282 -32.04839 -31.27769 -28.31012 -27.91390 -27.50855 -25.82481 -25.54455 -23.88476 -22.02131 -20.66408 -19.85918 -19.55030 -19.11598 -18.57407 -17.69693 -17.29703 -17.01606 -16.60711 -16.26120 -16.19570 -15.85494 -15.55198 -14.99934 -14.84828 -14.81903 -14.57893 -14.45809 -14.27311 -13.99022 -13.78305 -13.52187 -13.32355 -13.19581 -12.81482 -12.74833 -12.69859 -12.56765 -12.30697 -12.27067 -11.88617 -11.39319 -11.12026 -11.08720 -10.97592 -10.46726 -10.00778 -9.75879 -9.00764 -8.55830 -6.18036 -0.47078 -0.23794 1.10126 1.14651 1.29093 1.29754 1.40236 1.76311 1.86539 2.12673 2.68026 2.89252 2.92788 3.04085 3.21378 3.66232 3.67049 3.77154 3.81726 3.99355 4.04613 4.20690 4.23589 4.24478 4.40605 4.46660 4.51389 4.66119 4.69301 4.76149 4.80623 4.87724 4.93426 5.09557 5.19985 5.29851 5.37632 5.45337 5.48113 5.58207 5.85911 6.00351 6.48860 6.53449 6.83010 6.88365 7.24596 7.78924 8.61264 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.024116 B = 0.003014 C = 0.002901 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1160.791967 B = 9287.315532 C = 9650.779096 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C -0.088 4.088 3 C -0.071 4.071 4 C -0.127 4.127 5 C -0.069 4.069 6 C -0.217 4.217 7 C 0.133 3.867 8 N -0.529 5.529 9 C 0.378 3.622 10 N -0.540 5.540 11 C 0.121 3.879 12 C -0.134 4.134 13 C 0.464 3.536 14 O -0.611 6.611 15 N -0.483 5.483 16 C 0.057 3.943 17 C -0.336 4.336 18 H 0.051 0.949 19 C 0.013 3.987 20 N -0.908 5.908 21 Si 0.948 3.052 22 H -0.237 1.237 23 H -0.290 1.290 24 H -0.267 1.267 25 C 0.533 3.467 26 O -0.551 6.551 27 H 0.076 0.924 28 H 0.086 0.914 29 H 0.069 0.931 30 H 0.169 0.831 31 H 0.162 0.838 32 H 0.127 0.873 33 H 0.244 0.756 34 H 0.128 0.872 35 H 0.074 0.926 36 H 0.087 0.913 37 H 0.129 0.871 38 H 0.084 0.916 39 H 0.054 0.946 40 H 0.087 0.913 41 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.043 25.430 -3.252 30.243 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.089 4.089 3 C -0.090 4.090 4 C -0.145 4.145 5 C -0.088 4.088 6 C -0.222 4.222 7 C 0.024 3.976 8 N -0.248 5.248 9 C 0.093 3.907 10 N -0.261 5.261 11 C -0.001 4.001 12 C -0.175 4.175 13 C 0.253 3.747 14 O -0.496 6.496 15 N -0.205 5.205 16 C -0.085 4.085 17 C -0.464 4.464 18 H 0.069 0.931 19 C -0.189 4.189 20 N -0.545 5.545 21 Si 0.772 3.228 22 H -0.162 1.162 23 H -0.217 1.217 24 H -0.192 1.192 25 C 0.327 3.673 26 O -0.428 6.428 27 H 0.095 0.905 28 H 0.105 0.895 29 H 0.088 0.912 30 H 0.187 0.813 31 H 0.179 0.821 32 H 0.145 0.855 33 H 0.260 0.740 34 H 0.146 0.854 35 H 0.093 0.907 36 H 0.105 0.895 37 H 0.147 0.853 38 H 0.103 0.897 39 H 0.073 0.927 40 H 0.105 0.895 41 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -15.892 25.185 -3.642 30.002 hybrid contribution 2.137 -0.513 0.343 2.224 sum -13.756 24.672 -3.299 28.439 Atomic orbital electron populations 1.20665 0.88128 1.03744 1.03107 1.20050 0.98097 0.90208 1.00587 1.21636 0.94046 0.98469 0.94848 1.21516 0.94571 0.98170 1.00279 1.21152 1.00605 0.91174 0.95911 1.20684 0.94697 0.93596 1.13236 1.18946 0.88632 0.93199 0.96804 1.68684 1.35638 0.96555 1.23936 1.25687 0.79374 0.99783 0.85884 1.46748 1.08586 1.08562 1.62172 1.21564 1.00401 0.81167 0.96970 1.21827 1.03530 0.93466 0.98666 1.20870 0.82725 0.87502 0.83593 1.90549 1.58682 1.68059 1.32294 1.43822 1.53760 1.17497 1.05454 1.22241 1.02334 0.97992 0.85965 1.18700 1.21258 0.89925 1.16471 0.93106 1.26111 0.96409 0.98672 0.97739 1.69855 1.32469 1.19845 1.32343 0.85853 0.77899 0.79388 0.79642 1.16205 1.21681 1.19165 1.18920 0.86973 0.85097 0.76291 1.90861 1.14158 1.87208 1.50616 0.90511 0.89527 0.91213 0.81340 0.82062 0.85459 0.74016 0.85382 0.90700 0.89467 0.85282 0.89720 0.92732 0.89475 0.90957 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.18 9.81 71.24 0.70 -0.48 16 2 C -0.09 -1.48 5.91 -19.66 -0.12 -1.60 16 3 C -0.07 -0.90 9.66 22.29 0.22 -0.69 16 4 C -0.13 -1.88 10.02 22.31 0.22 -1.65 16 5 C -0.07 -1.53 9.68 22.42 0.22 -1.32 16 6 C -0.22 -5.63 5.89 -19.97 -0.12 -5.75 16 7 C 0.13 2.99 6.60 39.62 0.26 3.25 16 8 N -0.53 -10.77 9.47 -191.92 -1.82 -12.59 16 9 C 0.38 6.77 11.41 180.19 2.06 8.82 16 10 N -0.54 -13.21 2.61 -647.83 -1.69 -14.89 16 11 C 0.12 3.36 4.65 86.38 0.40 3.76 16 12 C -0.13 -4.03 4.64 29.85 0.14 -3.89 16 13 C 0.46 20.52 7.63 87.66 0.67 21.19 16 14 O -0.61 -32.39 15.85 -3.07 -0.05 -32.44 16 15 N -0.48 -22.92 2.59 -658.91 -1.70 -24.62 16 16 C 0.06 2.03 8.78 127.77 1.12 3.15 16 17 C -0.34 -19.59 9.37 84.04 0.79 -18.80 16 18 H 0.05 3.44 7.90 -2.91 -0.02 3.42 16 19 C 0.01 0.74 5.29 84.93 0.45 1.19 16 20 N -0.91 -53.97 13.96 21.67 0.30 -53.67 16 21 Si 0.95 42.59 24.96 68.60 1.71 44.30 16 22 H -0.24 -9.19 6.69 99.48 0.67 -8.53 16 23 H -0.29 -13.07 7.11 99.48 0.71 -12.37 16 24 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 25 C 0.53 16.21 7.66 86.47 0.66 16.87 16 26 O -0.55 -20.93 16.32 -4.43 -0.07 -21.00 16 27 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 28 H 0.09 0.62 8.09 -2.38 -0.02 0.60 16 29 H 0.07 0.97 7.57 -2.39 -0.02 0.96 16 30 H 0.17 0.87 8.06 -2.91 -0.02 0.84 16 31 H 0.16 1.34 8.06 -2.91 -0.02 1.32 16 32 H 0.13 2.94 7.83 -2.91 -0.02 2.92 16 33 H 0.24 2.02 7.99 -2.91 -0.02 2.00 16 34 H 0.13 2.94 7.95 -2.39 -0.02 2.92 16 35 H 0.07 2.61 7.42 -2.39 -0.02 2.59 16 36 H 0.09 2.69 7.41 -2.38 -0.02 2.68 16 37 H 0.13 2.80 8.11 -2.39 -0.02 2.78 16 38 H 0.08 2.50 8.14 -2.39 -0.02 2.48 16 39 H 0.05 2.09 3.42 -2.39 -0.01 2.08 16 40 H 0.09 2.52 6.64 -2.39 -0.02 2.51 16 41 H 0.28 15.29 8.31 -92.70 -0.77 14.51 16 Total: -1.00 -83.00 344.69 5.37 -77.63 By element: Atomic # 1 Polarization: 12.18 SS G_CDS: 1.02 Total: 13.20 kcal Atomic # 6 Polarization: 16.40 SS G_CDS: 7.67 Total: 24.07 kcal Atomic # 7 Polarization: -100.86 SS G_CDS: -4.91 Total: -105.77 kcal Atomic # 8 Polarization: -53.32 SS G_CDS: -0.12 Total: -53.44 kcal Atomic # 14 Polarization: 42.59 SS G_CDS: 1.71 Total: 44.30 kcal Total: -83.00 5.37 -77.63 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299596171.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.548 kcal (2) G-P(sol) polarization free energy of solvation -83.001 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.453 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.371 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.630 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.082 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds