Wall clock time and date at job start Tue Mar 31 2020 10:49:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86798 * 120.00011 * 2 1 4 4 H 1.48506 * 109.47110 * 269.99608 * 3 2 1 5 5 H 1.48494 * 109.47268 * 29.99831 * 3 2 1 6 6 H 1.48506 * 109.47139 * 149.99730 * 3 2 1 7 7 C 1.37878 * 120.00067 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99796 * 359.97438 * 7 2 1 9 9 C 1.50702 * 120.00277 * 180.02562 * 7 2 1 10 10 C 1.53038 * 109.46264 * 179.97438 * 9 7 2 11 11 C 1.53191 * 109.31194 * 181.36630 * 10 9 7 12 12 N 1.46924 * 108.89583 * 305.29528 * 11 10 9 13 13 C 1.34774 * 120.63196 * 233.67411 * 12 11 10 14 14 O 1.21568 * 119.99989 * 354.01824 * 13 12 11 15 15 C 1.47748 * 120.00029 * 174.02268 * 13 12 11 16 16 C 1.41117 * 126.30090 * 173.23614 * 15 13 12 17 17 C 1.37002 * 105.41783 * 179.97438 * 16 15 13 18 18 C 1.47332 * 126.63148 * 180.02562 * 17 16 15 19 19 C 1.36153 * 125.94755 * 179.97438 * 18 17 16 20 20 C 1.40870 * 106.72968 * 179.97438 * 19 18 17 21 21 C 1.34763 * 107.05891 * 359.97438 * 20 19 18 22 22 O 1.34333 * 108.70274 * 359.73807 * 21 20 19 23 23 N 1.36551 * 106.73175 * 359.97438 * 17 16 15 24 24 H 0.96993 * 125.02670 * 180.02562 * 23 17 16 25 25 N 1.28446 * 109.94119 * 359.76812 * 23 17 16 26 26 C 1.47208 * 118.55588 * 53.54078 * 12 11 10 27 27 C 1.53049 * 109.44450 * 300.05974 * 9 7 2 28 28 H 0.96994 * 120.00097 * 0.02562 * 1 2 3 29 29 H 1.09000 * 109.46213 * 60.01609 * 9 7 2 30 30 H 1.09000 * 109.49589 * 61.42248 * 10 9 7 31 31 H 1.08997 * 109.52526 * 301.33475 * 10 9 7 32 32 H 1.09005 * 109.58487 * 65.15859 * 11 10 9 33 33 H 1.09001 * 109.59087 * 185.43305 * 11 10 9 34 34 H 1.07992 * 127.29054 * 359.95520 * 16 15 13 35 35 H 1.08000 * 126.63499 * 0.03053 * 19 18 17 36 36 H 1.08000 * 126.47484 * 179.97438 * 20 19 18 37 37 H 1.07998 * 125.65226 * 179.97438 * 21 20 19 38 38 H 1.08995 * 109.53400 * 186.67366 * 26 12 11 39 39 H 1.09000 * 109.67887 * 66.36746 * 26 12 11 40 40 H 1.08991 * 109.49657 * 298.56743 * 27 9 7 41 41 H 1.08999 * 109.49632 * 58.66870 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 1.4645 -2.1293 0.0014 9 6 3.5115 -1.1941 0.0011 10 6 4.0214 -2.6370 0.0023 11 6 5.5529 -2.6332 0.0373 12 7 6.0523 -1.8206 -1.0802 13 6 6.9461 -2.3276 -1.9522 14 8 7.4289 -3.4263 -1.7580 15 6 7.3394 -1.5482 -3.1442 16 6 8.3528 -1.8859 -4.0663 17 6 8.3534 -0.8766 -4.9927 18 6 9.2340 -0.7630 -6.1684 19 6 9.2222 0.2471 -7.0813 20 6 10.2236 -0.0490 -8.0267 21 6 10.7921 -1.2113 -7.6496 22 8 10.1961 -1.6368 -6.5234 23 7 7.3791 0.0031 -4.6163 24 1 7.1524 0.8187 -5.0897 25 7 6.8038 -0.4122 -3.5456 26 6 5.5530 -0.4436 -1.2272 27 6 4.0215 -0.4715 -1.2479 28 1 -0.4850 0.8400 -0.0004 29 1 3.8743 -0.6803 0.8913 30 1 3.6795 -3.1444 -0.8998 31 1 3.6387 -3.1579 0.8799 32 1 5.8957 -2.2076 0.9805 33 1 5.9232 -3.6538 -0.0589 34 1 8.9926 -2.7557 -4.0458 35 1 8.5715 1.1091 -7.0802 36 1 10.4864 0.5434 -8.8906 37 1 11.5963 -1.7151 -8.1651 38 1 5.9234 -0.0193 -2.1604 39 1 5.8958 0.1626 -0.3888 40 1 3.6796 -0.9989 -2.1384 41 1 3.6388 0.5490 -1.2595 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000334325895.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:49:51 Heat of formation + Delta-G solvation = 50.578666 kcal Electronic energy + Delta-G solvation = -25704.956805 eV Core-core repulsion = 21974.001476 eV Total energy + Delta-G solvation = -3730.955329 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.137 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -43.99027 -43.30589 -40.93807 -38.57168 -35.38669 -34.34982 -33.69468 -33.09820 -32.94393 -31.88867 -29.36508 -28.41038 -25.83329 -24.31764 -23.93653 -23.55534 -22.73696 -21.70499 -21.29960 -20.10042 -19.55110 -18.87774 -18.45059 -17.41974 -17.30648 -17.01410 -16.68385 -16.53996 -15.94082 -15.68034 -15.17928 -15.03067 -14.98222 -14.77312 -14.28396 -14.13825 -13.86593 -13.83040 -13.68517 -13.50264 -13.28921 -12.82956 -12.36437 -12.18383 -12.09403 -11.66195 -11.47149 -11.36892 -11.33273 -11.01495 -10.87108 -10.78348 -10.62126 -10.56047 -9.62556 -9.09403 -8.27259 -6.31555 -0.11043 0.39358 1.20493 1.30847 1.32352 1.39169 1.49840 1.80535 1.85699 2.20981 2.31808 2.35530 3.07249 3.12530 3.35495 3.74215 3.94645 4.03659 4.15886 4.16724 4.19529 4.25857 4.30861 4.42004 4.46283 4.66890 4.77692 4.81363 4.90021 4.90626 4.96829 5.01885 5.06776 5.09792 5.17764 5.38666 5.49378 5.56395 5.68628 5.73708 5.84530 6.06331 6.31202 6.32996 6.64696 6.75196 7.02048 7.33669 8.89836 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.020347 B = 0.003214 C = 0.002874 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1375.765160 B = 8708.921897 C = 9740.854882 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.954 5.954 2 C 0.007 3.993 3 Si 0.950 3.050 4 H -0.261 1.261 5 H -0.302 1.302 6 H -0.238 1.238 7 C -0.519 4.519 8 H 0.028 0.972 9 C 0.012 3.988 10 C -0.106 4.106 11 C 0.116 3.884 12 N -0.591 5.591 13 C 0.597 3.403 14 O -0.568 6.568 15 C -0.019 4.019 16 C -0.163 4.163 17 C 0.099 3.901 18 C 0.016 3.984 19 C -0.178 4.178 20 C -0.221 4.221 21 C -0.018 4.018 22 O -0.181 6.181 23 N -0.348 5.348 24 H 0.465 0.535 25 N -0.242 5.242 26 C 0.079 3.921 27 C -0.123 4.123 28 H 0.265 0.735 29 H 0.033 0.967 30 H 0.041 0.959 31 H 0.072 0.928 32 H 0.084 0.916 33 H 0.088 0.912 34 H 0.170 0.830 35 H 0.174 0.826 36 H 0.180 0.820 37 H 0.245 0.755 38 H 0.141 0.859 39 H 0.074 0.926 40 H 0.048 0.952 41 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.868 4.204 -16.625 30.207 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.594 5.594 2 C -0.190 4.190 3 Si 0.776 3.224 4 H -0.187 1.187 5 H -0.230 1.230 6 H -0.162 1.162 7 C -0.557 4.557 8 H 0.047 0.953 9 C -0.007 4.007 10 C -0.145 4.145 11 C -0.006 4.006 12 N -0.322 5.322 13 C 0.384 3.616 14 O -0.446 6.446 15 C -0.177 4.177 16 C -0.191 4.191 17 C -0.027 4.027 18 C -0.035 4.035 19 C -0.198 4.198 20 C -0.240 4.240 21 C -0.086 4.086 22 O -0.077 6.077 23 N -0.067 5.067 24 H 0.315 0.685 25 N -0.079 5.079 26 C -0.043 4.043 27 C -0.161 4.161 28 H 0.073 0.927 29 H 0.051 0.949 30 H 0.060 0.940 31 H 0.090 0.910 32 H 0.103 0.897 33 H 0.106 0.894 34 H 0.187 0.813 35 H 0.191 0.809 36 H 0.197 0.803 37 H 0.261 0.739 38 H 0.158 0.842 39 H 0.092 0.908 40 H 0.067 0.933 41 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 24.218 4.181 -16.022 29.337 hybrid contribution -0.310 0.481 -0.351 0.671 sum 23.907 4.662 -16.373 29.349 Atomic orbital electron populations 1.70067 1.08427 1.28014 1.52921 1.25973 0.95471 1.03354 0.94163 0.85820 0.79427 0.78150 0.78969 1.18704 1.22992 1.16167 1.21373 0.91555 0.92843 1.49880 0.95330 1.19140 0.93480 0.93913 0.94201 1.21713 0.93710 0.97723 1.01323 1.21752 0.93767 0.96365 0.88744 1.48095 1.41295 1.15279 1.27521 1.17213 0.78794 0.84465 0.81137 1.90731 1.56232 1.21476 1.76192 1.21651 1.00899 0.95528 0.99629 1.21878 1.01392 1.01457 0.94336 1.18260 0.95064 0.93431 0.95922 1.18776 0.94861 0.93200 0.96696 1.22234 1.02392 1.00037 0.95152 1.22152 0.99323 0.99177 1.03345 1.25138 1.00191 0.97280 0.85986 1.84096 1.40006 1.45078 1.38480 1.43657 1.23766 1.20790 1.18491 0.68546 1.73200 1.20250 1.13410 1.01078 1.22807 0.94167 0.81398 1.05965 1.22122 0.94372 0.99756 0.99887 0.92654 0.94929 0.93974 0.90991 0.89748 0.89366 0.81297 0.80903 0.80299 0.73873 0.84246 0.90823 0.93300 0.93027 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.07 13.96 21.45 0.30 -59.77 16 2 C 0.01 0.39 5.45 84.66 0.46 0.85 16 3 Si 0.95 43.75 24.38 68.60 1.67 45.42 16 4 H -0.26 -11.24 6.86 99.48 0.68 -10.56 16 5 H -0.30 -14.02 7.11 99.48 0.71 -13.31 16 6 H -0.24 -9.89 6.53 99.48 0.65 -9.24 16 7 C -0.52 -29.65 9.14 25.60 0.23 -29.42 16 8 H 0.03 1.82 7.99 -2.91 -0.02 1.80 16 9 C 0.01 0.53 1.66 -11.51 -0.02 0.51 16 10 C -0.11 -4.28 5.30 30.67 0.16 -4.12 16 11 C 0.12 3.96 6.40 86.36 0.55 4.51 16 12 N -0.59 -20.57 2.98 -821.70 -2.45 -23.02 16 13 C 0.60 21.04 7.70 86.76 0.67 21.71 16 14 O -0.57 -22.45 16.36 -3.93 -0.06 -22.51 16 15 C -0.02 -0.58 6.85 42.36 0.29 -0.29 16 16 C -0.16 -4.22 10.77 22.69 0.24 -3.98 16 17 C 0.10 2.03 7.10 40.51 0.29 2.32 16 18 C 0.02 0.27 7.17 24.18 0.17 0.45 16 19 C -0.18 -2.11 10.84 22.43 0.24 -1.87 16 20 C -0.22 -2.02 10.88 22.12 0.24 -1.78 16 21 C -0.02 -0.17 12.08 67.02 0.81 0.64 16 22 O -0.18 -3.11 10.68 -6.99 -0.07 -3.18 16 23 N -0.35 -6.41 6.90 -48.72 -0.34 -6.74 16 24 H 0.46 4.67 8.96 -220.01 -1.97 2.70 16 25 N -0.24 -6.28 8.60 -48.38 -0.42 -6.70 16 26 C 0.08 2.66 6.33 86.31 0.55 3.21 16 27 C -0.12 -5.07 4.85 30.67 0.15 -4.92 16 28 H 0.26 15.59 8.31 -92.71 -0.77 14.82 16 29 H 0.03 1.47 7.20 -2.39 -0.02 1.45 16 30 H 0.04 1.80 8.14 -2.39 -0.02 1.78 16 31 H 0.07 2.81 8.14 -2.39 -0.02 2.79 16 32 H 0.08 2.57 8.14 -2.38 -0.02 2.55 16 33 H 0.09 2.98 7.04 -2.39 -0.02 2.96 16 34 H 0.17 4.22 8.06 -2.91 -0.02 4.20 16 35 H 0.17 1.10 8.06 -2.91 -0.02 1.07 16 36 H 0.18 0.65 8.06 -2.91 -0.02 0.63 16 37 H 0.25 0.19 8.06 -2.91 -0.02 0.17 16 38 H 0.14 4.26 3.78 -73.17 -0.28 3.99 16 39 H 0.07 2.28 8.14 -2.39 -0.02 2.26 16 40 H 0.05 2.12 8.14 -2.39 -0.02 2.10 16 41 H 0.05 2.16 3.24 -2.39 -0.01 2.16 16 Total: -1.00 -76.79 336.34 2.44 -74.35 By element: Atomic # 1 Polarization: 15.56 SS G_CDS: -1.24 Total: 14.33 kcal Atomic # 6 Polarization: -17.22 SS G_CDS: 5.04 Total: -12.17 kcal Atomic # 7 Polarization: -93.33 SS G_CDS: -2.91 Total: -96.23 kcal Atomic # 8 Polarization: -25.55 SS G_CDS: -0.14 Total: -25.69 kcal Atomic # 14 Polarization: 43.75 SS G_CDS: 1.67 Total: 45.42 kcal Total: -76.79 2.44 -74.35 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334325895.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.933 kcal (2) G-P(sol) polarization free energy of solvation -76.790 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.143 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.436 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.354 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.579 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds