Wall clock time and date at job start Tue Mar 31 2020 11:01:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.35597 * 119.87756 * 2 1 4 4 C 1.46425 * 118.55902 * 180.02562 * 3 2 1 5 5 C 1.39858 * 121.06848 * 179.91160 * 4 3 2 6 6 C 1.38171 * 119.55903 * 179.97438 * 5 4 3 7 7 N 1.40098 * 119.85374 * 180.02562 * 6 5 4 8 8 C 1.34779 * 119.99896 * 324.84569 * 7 6 5 9 9 O 1.21597 * 120.00044 * 4.60204 * 8 7 6 10 10 N 1.34770 * 120.00153 * 184.59062 * 8 7 6 11 11 C 1.46500 * 120.00241 * 180.02562 * 10 8 7 12 12 C 1.50704 * 109.47072 * 180.02562 * 11 10 8 13 13 H 1.07999 * 120.00264 * 359.97438 * 12 11 10 14 14 C 1.37875 * 119.99745 * 180.02562 * 12 11 10 15 15 N 1.31515 * 119.99631 * 179.97438 * 14 12 11 16 16 Si 1.86803 * 120.00284 * 359.97438 * 14 12 11 17 17 H 1.48500 * 109.46800 * 89.99822 * 16 14 12 18 18 H 1.48497 * 109.47079 * 210.00076 * 16 14 12 19 19 H 1.48500 * 109.46707 * 330.00279 * 16 14 12 20 20 C 1.39436 * 120.28993 * 0.02562 * 6 5 4 21 21 C 1.37674 * 120.62695 * 0.02562 * 20 6 5 22 22 C 1.39132 * 119.98995 * 359.97438 * 21 20 6 23 23 N 1.38008 * 120.81759 * 179.97438 * 22 21 20 24 24 C 1.46496 * 119.51731 * 0.04821 * 23 22 21 25 25 C 1.34436 * 120.96500 * 180.02562 * 23 22 21 26 26 O 1.21890 * 119.17453 * 179.97438 * 25 23 22 27 27 H 1.08997 * 109.46861 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.46619 * 300.06404 * 1 2 3 29 29 H 1.08992 * 109.47382 * 60.06550 * 1 2 3 30 30 H 1.08005 * 120.72274 * 359.93619 * 3 2 1 31 31 H 1.08000 * 120.22541 * 359.95751 * 5 4 3 32 32 H 0.96998 * 119.99677 * 144.84813 * 7 6 5 33 33 H 0.97002 * 119.99665 * 0.02562 * 10 8 7 34 34 H 1.08998 * 109.46693 * 300.00264 * 11 10 8 35 35 H 1.08999 * 109.46990 * 60.00311 * 11 10 8 36 36 H 0.97001 * 119.99767 * 179.97438 * 15 14 12 37 37 H 1.07999 * 119.68375 * 179.97438 * 20 6 5 38 38 H 1.07995 * 120.00284 * 179.70179 * 21 20 6 39 39 H 1.08995 * 109.47617 * 89.99847 * 24 23 22 40 40 H 1.09007 * 109.46650 * 209.99679 * 24 23 22 41 41 H 1.08998 * 109.47340 * 329.99577 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1825 1.1757 0.0000 4 6 3.6464 1.1421 -0.0006 5 6 4.3955 2.3231 -0.0025 6 6 5.7755 2.2549 -0.0024 7 7 6.5320 3.4341 -0.0037 8 6 6.0926 4.5158 -0.6770 9 8 5.0014 4.4964 -1.2132 10 7 6.8625 5.6192 -0.7557 11 6 6.3847 6.7952 -1.4871 12 6 7.4260 7.8829 -1.4247 13 1 8.3510 7.7151 -0.8930 14 6 7.1973 9.0925 -2.0454 15 7 8.1058 10.0419 -1.9905 16 14 5.5971 9.3831 -2.9643 17 1 4.5886 9.9517 -2.0344 18 1 5.8329 10.3338 -4.0804 19 1 5.0979 8.0947 -3.5085 20 6 6.4185 1.0177 -0.0010 21 6 5.6908 -0.1510 -0.0003 22 6 4.3002 -0.1044 -0.0003 23 7 3.5539 -1.2652 0.0000 24 6 4.2359 -2.5617 0.0013 25 6 2.2102 -1.2236 -0.0006 26 8 1.5833 -2.2690 -0.0008 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3632 0.5148 0.8894 29 1 -0.3634 0.5128 -0.8905 30 1 1.6523 2.1167 -0.0010 31 1 3.8987 3.2820 -0.0042 32 1 7.3720 3.4719 0.4799 33 1 7.7331 5.6346 -0.3281 34 1 6.2023 6.5266 -2.5275 35 1 5.4587 7.1520 -1.0361 36 1 7.9451 10.8928 -2.4275 37 1 7.4977 0.9758 -0.0014 38 1 6.1992 -1.1038 -0.0041 39 1 4.4043 -2.8827 1.0293 40 1 3.6176 -3.2980 -0.5124 41 1 5.1930 -2.4694 -0.5119 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000334709790.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:01:08 Heat of formation + Delta-G solvation = -11.745935 kcal Electronic energy + Delta-G solvation = -25073.300057 eV Core-core repulsion = 21339.642131 eV Total energy + Delta-G solvation = -3733.657927 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.137 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.65541 -40.18064 -38.52808 -36.25372 -35.58192 -34.43811 -33.81579 -32.40463 -31.44085 -29.38501 -28.25115 -27.42381 -27.01839 -23.68113 -23.02355 -22.26407 -21.88879 -20.50986 -18.99599 -18.50154 -18.02083 -17.08787 -16.42826 -16.28850 -16.08289 -15.38503 -15.23164 -14.78540 -14.59541 -14.34212 -14.09456 -13.83390 -13.80196 -13.37247 -13.13095 -12.94856 -12.89361 -12.77187 -12.51563 -12.42798 -12.34061 -11.92803 -11.56184 -11.06890 -11.02338 -10.80365 -10.41778 -10.21959 -10.03387 -9.75433 -9.58764 -9.54047 -8.85521 -8.52126 -8.31132 -7.64497 -6.27526 -4.30540 0.28116 1.02161 1.63525 2.45129 2.82545 2.95455 3.22723 3.30498 3.37502 3.49071 3.80130 4.25717 4.27813 4.29467 4.39549 4.63316 4.74269 4.87237 4.91181 5.02378 5.04662 5.07964 5.19895 5.34194 5.42793 5.46601 5.47303 5.59145 5.74777 5.79032 6.00434 6.08463 6.19406 6.31295 6.33052 6.60244 6.80980 6.99142 6.99811 7.06590 7.20905 7.38338 7.77809 8.15970 8.48150 8.70095 8.93198 9.31964 10.84271 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.023362 B = 0.002679 C = 0.002443 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1198.242916 B =10447.964111 C =11456.925158 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C -0.191 4.191 3 C -0.016 4.016 4 C -0.107 4.107 5 C -0.060 4.060 6 C 0.147 3.853 7 N -0.693 5.693 8 C 0.693 3.307 9 O -0.587 6.587 10 N -0.714 5.714 11 C 0.237 3.763 12 C -0.546 4.546 13 H 0.080 0.920 14 C 0.079 3.921 15 N -0.891 5.891 16 Si 0.877 3.123 17 H -0.272 1.272 18 H -0.283 1.283 19 H -0.260 1.260 20 C -0.093 4.093 21 C -0.147 4.147 22 C 0.156 3.844 23 N -0.521 5.521 24 C 0.066 3.934 25 C 0.538 3.462 26 O -0.546 6.546 27 H 0.078 0.922 28 H 0.070 0.930 29 H 0.071 0.929 30 H 0.146 0.854 31 H 0.157 0.843 32 H 0.406 0.594 33 H 0.395 0.605 34 H 0.026 0.974 35 H 0.021 0.979 36 H 0.268 0.732 37 H 0.135 0.865 38 H 0.137 0.863 39 H 0.070 0.930 40 H 0.090 0.910 41 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.594 -21.803 6.567 23.448 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.194 4.194 3 C -0.036 4.036 4 C -0.111 4.111 5 C -0.081 4.081 6 C 0.050 3.950 7 N -0.341 5.341 8 C 0.393 3.607 9 O -0.465 6.465 10 N -0.365 5.365 11 C 0.115 3.885 12 C -0.584 4.584 13 H 0.098 0.902 14 C -0.126 4.126 15 N -0.528 5.528 16 Si 0.703 3.297 17 H -0.198 1.198 18 H -0.209 1.209 19 H -0.184 1.184 20 C -0.115 4.115 21 C -0.168 4.168 22 C 0.056 3.944 23 N -0.238 5.238 24 C -0.076 4.076 25 C 0.335 3.665 26 O -0.427 6.427 27 H 0.097 0.903 28 H 0.089 0.911 29 H 0.090 0.910 30 H 0.163 0.837 31 H 0.174 0.826 32 H 0.242 0.758 33 H 0.229 0.771 34 H 0.044 0.956 35 H 0.039 0.961 36 H 0.078 0.922 37 H 0.153 0.847 38 H 0.155 0.845 39 H 0.089 0.911 40 H 0.109 0.891 41 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -6.901 -22.169 5.959 23.971 hybrid contribution 0.385 0.463 -0.101 0.611 sum -6.516 -21.706 5.858 23.408 Atomic orbital electron populations 1.20570 0.88793 1.04089 1.02193 1.20807 0.98031 0.91886 1.08664 1.22535 0.91741 0.98599 0.90755 1.18528 0.93059 0.91331 1.08167 1.21400 0.92426 0.98184 0.96077 1.17346 0.90551 0.85182 1.01876 1.42706 1.25928 1.10744 1.54754 1.16118 0.84776 0.80257 0.79546 1.90865 1.21053 1.82440 1.52175 1.45449 1.20507 1.13559 1.57004 1.19438 0.95784 0.81735 0.91535 1.21057 1.03845 0.97133 1.36327 0.90228 1.24778 0.96908 0.95454 0.95415 1.69874 1.34335 1.05168 1.43428 0.86817 0.83695 0.79087 0.80099 1.19790 1.20872 1.18421 1.20861 1.00237 0.90237 1.00134 1.20483 0.90673 0.98963 1.06674 1.17934 0.91460 0.85106 0.99933 1.45099 1.06818 1.06611 1.65259 1.22002 0.98286 0.83898 1.03365 1.16865 0.80724 0.90835 0.78034 1.90856 1.65690 1.34554 1.51563 0.90347 0.91080 0.91037 0.83668 0.82576 0.75849 0.77133 0.95631 0.96072 0.92173 0.84749 0.84548 0.91126 0.89138 0.89831 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.96 9.99 36.01 0.36 -0.60 16 2 C -0.19 -2.25 5.89 -104.47 -0.61 -2.86 16 3 C -0.02 -0.17 9.76 -37.23 -0.36 -0.54 16 4 C -0.11 -1.32 5.87 -105.05 -0.62 -1.93 16 5 C -0.06 -0.80 8.47 -39.00 -0.33 -1.13 16 6 C 0.15 1.81 6.30 -83.66 -0.53 1.28 16 7 N -0.69 -8.79 5.35 -14.21 -0.08 -8.87 16 8 C 0.69 12.20 8.40 -86.92 -0.73 11.47 16 9 O -0.59 -12.32 13.77 5.28 0.07 -12.25 16 10 N -0.71 -13.32 5.55 -66.41 -0.37 -13.69 16 11 C 0.24 5.53 4.50 -5.19 -0.02 5.51 16 12 C -0.55 -14.34 9.83 -34.44 -0.34 -14.68 16 13 H 0.08 2.17 7.84 -52.49 -0.41 1.76 16 14 C 0.08 2.15 5.47 -17.82 -0.10 2.05 16 15 N -0.89 -25.75 13.96 55.43 0.77 -24.98 16 16 Si 0.88 20.75 27.47 -169.99 -4.67 16.08 16 17 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 18 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 19 H -0.26 -6.10 6.54 56.52 0.37 -5.73 16 20 C -0.09 -0.87 9.93 -39.34 -0.39 -1.26 16 21 C -0.15 -1.33 9.18 -39.46 -0.36 -1.69 16 22 C 0.16 1.75 6.53 -83.80 -0.55 1.21 16 23 N -0.52 -5.90 3.04 -124.20 -0.38 -6.28 16 24 C 0.07 0.53 9.84 59.84 0.59 1.12 16 25 C 0.54 7.16 7.40 -15.32 -0.11 7.05 16 26 O -0.55 -8.47 15.28 5.02 0.08 -8.39 16 27 H 0.08 0.84 7.05 -51.93 -0.37 0.47 16 28 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 29 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 30 H 0.15 1.34 8.06 -52.48 -0.42 0.91 16 31 H 0.16 2.36 6.21 -52.49 -0.33 2.03 16 32 H 0.41 3.73 8.84 -40.82 -0.36 3.37 16 33 H 0.40 6.32 8.34 -40.82 -0.34 5.98 16 34 H 0.03 0.64 7.20 -51.93 -0.37 0.26 16 35 H 0.02 0.51 7.57 -51.93 -0.39 0.12 16 36 H 0.27 7.26 8.31 -40.82 -0.34 6.93 16 37 H 0.13 0.90 8.06 -52.49 -0.42 0.47 16 38 H 0.14 0.83 6.15 -52.49 -0.32 0.51 16 39 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 40 H 0.09 0.78 7.34 -51.92 -0.38 0.40 16 41 H 0.08 0.46 6.16 -51.93 -0.32 0.14 16 LS Contribution 344.07 15.07 5.19 5.19 Total: -1.00 -33.97 344.07 -8.37 -42.33 By element: Atomic # 1 Polarization: 10.73 SS G_CDS: -4.88 Total: 5.86 kcal Atomic # 6 Polarization: 9.10 SS G_CDS: -4.11 Total: 5.00 kcal Atomic # 7 Polarization: -53.77 SS G_CDS: -0.05 Total: -53.82 kcal Atomic # 8 Polarization: -20.78 SS G_CDS: 0.15 Total: -20.64 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -4.67 Total: 16.08 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -33.97 -8.37 -42.33 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334709790.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.587 kcal (2) G-P(sol) polarization free energy of solvation -33.966 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.379 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.367 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.333 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.746 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds