Wall clock time and date at job start Tue Mar 31 2020 11:01:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.35597 * 119.87756 * 2 1 4 4 C 1.46425 * 118.55902 * 180.02562 * 3 2 1 5 5 C 1.39858 * 121.06848 * 179.91160 * 4 3 2 6 6 C 1.38171 * 119.55903 * 179.97438 * 5 4 3 7 7 N 1.40098 * 119.85374 * 180.02562 * 6 5 4 8 8 C 1.34779 * 119.99896 * 324.84569 * 7 6 5 9 9 O 1.21597 * 120.00044 * 4.60204 * 8 7 6 10 10 N 1.34770 * 120.00153 * 184.59062 * 8 7 6 11 11 C 1.46500 * 120.00241 * 180.02562 * 10 8 7 12 12 C 1.50704 * 109.47072 * 180.02562 * 11 10 8 13 13 H 1.07999 * 120.00264 * 359.97438 * 12 11 10 14 14 C 1.37875 * 119.99745 * 180.02562 * 12 11 10 15 15 N 1.31515 * 119.99631 * 179.97438 * 14 12 11 16 16 Si 1.86803 * 120.00284 * 359.97438 * 14 12 11 17 17 H 1.48500 * 109.46800 * 89.99822 * 16 14 12 18 18 H 1.48497 * 109.47079 * 210.00076 * 16 14 12 19 19 H 1.48500 * 109.46707 * 330.00279 * 16 14 12 20 20 C 1.39436 * 120.28993 * 0.02562 * 6 5 4 21 21 C 1.37674 * 120.62695 * 0.02562 * 20 6 5 22 22 C 1.39132 * 119.98995 * 359.97438 * 21 20 6 23 23 N 1.38008 * 120.81759 * 179.97438 * 22 21 20 24 24 C 1.46496 * 119.51731 * 0.04821 * 23 22 21 25 25 C 1.34436 * 120.96500 * 180.02562 * 23 22 21 26 26 O 1.21890 * 119.17453 * 179.97438 * 25 23 22 27 27 H 1.08997 * 109.46861 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.46619 * 300.06404 * 1 2 3 29 29 H 1.08992 * 109.47382 * 60.06550 * 1 2 3 30 30 H 1.08005 * 120.72274 * 359.93619 * 3 2 1 31 31 H 1.08000 * 120.22541 * 359.95751 * 5 4 3 32 32 H 0.96998 * 119.99677 * 144.84813 * 7 6 5 33 33 H 0.97002 * 119.99665 * 0.02562 * 10 8 7 34 34 H 1.08998 * 109.46693 * 300.00264 * 11 10 8 35 35 H 1.08999 * 109.46990 * 60.00311 * 11 10 8 36 36 H 0.97001 * 119.99767 * 179.97438 * 15 14 12 37 37 H 1.07999 * 119.68375 * 179.97438 * 20 6 5 38 38 H 1.07995 * 120.00284 * 179.70179 * 21 20 6 39 39 H 1.08995 * 109.47617 * 89.99847 * 24 23 22 40 40 H 1.09007 * 109.46650 * 209.99679 * 24 23 22 41 41 H 1.08998 * 109.47340 * 329.99577 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1825 1.1757 0.0000 4 6 3.6464 1.1421 -0.0006 5 6 4.3955 2.3231 -0.0025 6 6 5.7755 2.2549 -0.0024 7 7 6.5320 3.4341 -0.0037 8 6 6.0926 4.5158 -0.6770 9 8 5.0014 4.4964 -1.2132 10 7 6.8625 5.6192 -0.7557 11 6 6.3847 6.7952 -1.4871 12 6 7.4260 7.8829 -1.4247 13 1 8.3510 7.7151 -0.8930 14 6 7.1973 9.0925 -2.0454 15 7 8.1058 10.0419 -1.9905 16 14 5.5971 9.3831 -2.9643 17 1 4.5886 9.9517 -2.0344 18 1 5.8329 10.3338 -4.0804 19 1 5.0979 8.0947 -3.5085 20 6 6.4185 1.0177 -0.0010 21 6 5.6908 -0.1510 -0.0003 22 6 4.3002 -0.1044 -0.0003 23 7 3.5539 -1.2652 0.0000 24 6 4.2359 -2.5617 0.0013 25 6 2.2102 -1.2236 -0.0006 26 8 1.5833 -2.2690 -0.0008 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3632 0.5148 0.8894 29 1 -0.3634 0.5128 -0.8905 30 1 1.6523 2.1167 -0.0010 31 1 3.8987 3.2820 -0.0042 32 1 7.3720 3.4719 0.4799 33 1 7.7331 5.6346 -0.3281 34 1 6.2023 6.5266 -2.5275 35 1 5.4587 7.1520 -1.0361 36 1 7.9451 10.8928 -2.4275 37 1 7.4977 0.9758 -0.0014 38 1 6.1992 -1.1038 -0.0041 39 1 4.4043 -2.8827 1.0293 40 1 3.6176 -3.2980 -0.5124 41 1 5.1930 -2.4694 -0.5119 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000334709790.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:01:07 Heat of formation + Delta-G solvation = -35.292549 kcal Electronic energy + Delta-G solvation = -25074.321115 eV Core-core repulsion = 21339.642131 eV Total energy + Delta-G solvation = -3734.678985 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.137 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.55383 -41.41448 -39.59279 -37.32115 -36.44164 -36.10608 -34.97226 -34.29299 -32.27225 -30.60761 -29.38322 -28.65999 -27.81851 -24.90876 -24.07492 -23.40425 -23.06113 -21.88829 -20.01418 -19.83208 -19.02851 -18.41632 -17.89447 -17.16340 -17.14879 -16.64614 -16.45375 -16.14192 -15.92584 -15.47666 -15.15446 -14.93026 -14.72425 -14.55982 -14.47257 -14.21970 -13.99957 -13.72818 -13.64946 -13.52698 -13.16316 -13.00936 -12.77364 -12.71340 -12.44714 -11.96932 -11.90384 -11.63405 -11.30552 -11.18052 -11.11919 -10.89908 -10.59637 -9.94155 -9.37610 -8.60663 -8.37876 -6.44668 -0.58199 0.09259 0.77630 1.35628 1.38202 1.50301 1.61087 1.71748 1.88019 2.22933 2.30392 2.87914 2.98374 3.31022 3.44693 3.52522 3.59962 3.94084 4.07941 4.18206 4.27705 4.38911 4.47115 4.55001 4.61775 4.74456 4.76321 4.77088 4.83733 4.95196 4.97274 5.07243 5.16170 5.23801 5.28305 5.33463 5.40168 5.47579 5.52210 5.83119 5.96389 6.08421 6.25397 6.57983 6.83919 7.10845 7.22276 7.56825 8.76684 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.023362 B = 0.002679 C = 0.002443 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1198.242916 B =10447.964111 C =11456.925158 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 C -0.205 4.205 3 C -0.015 4.015 4 C -0.123 4.123 5 C -0.078 4.078 6 C 0.127 3.873 7 N -0.671 5.671 8 C 0.694 3.306 9 O -0.622 6.622 10 N -0.714 5.714 11 C 0.251 3.749 12 C -0.545 4.545 13 H 0.061 0.939 14 C 0.027 3.973 15 N -0.932 5.932 16 Si 0.936 3.064 17 H -0.265 1.265 18 H -0.277 1.277 19 H -0.258 1.258 20 C -0.077 4.077 21 C -0.133 4.133 22 C 0.148 3.852 23 N -0.519 5.519 24 C 0.058 3.942 25 C 0.525 3.475 26 O -0.579 6.579 27 H 0.063 0.937 28 H 0.086 0.914 29 H 0.083 0.917 30 H 0.159 0.841 31 H 0.132 0.868 32 H 0.425 0.575 33 H 0.408 0.592 34 H 0.013 0.987 35 H 0.014 0.986 36 H 0.272 0.728 37 H 0.172 0.828 38 H 0.175 0.825 39 H 0.085 0.915 40 H 0.079 0.921 41 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.786 -23.470 6.787 24.896 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.208 4.208 3 C -0.036 4.036 4 C -0.126 4.126 5 C -0.099 4.099 6 C 0.032 3.968 7 N -0.321 5.321 8 C 0.395 3.605 9 O -0.503 6.503 10 N -0.367 5.367 11 C 0.127 3.873 12 C -0.583 4.583 13 H 0.079 0.921 14 C -0.174 4.174 15 N -0.571 5.571 16 Si 0.760 3.240 17 H -0.190 1.190 18 H -0.202 1.202 19 H -0.182 1.182 20 C -0.097 4.097 21 C -0.153 4.153 22 C 0.047 3.953 23 N -0.235 5.235 24 C -0.082 4.082 25 C 0.324 3.676 26 O -0.463 6.463 27 H 0.082 0.918 28 H 0.105 0.895 29 H 0.101 0.899 30 H 0.176 0.824 31 H 0.150 0.850 32 H 0.264 0.736 33 H 0.244 0.756 34 H 0.031 0.969 35 H 0.031 0.969 36 H 0.081 0.919 37 H 0.189 0.811 38 H 0.193 0.807 39 H 0.103 0.897 40 H 0.098 0.902 41 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -6.037 -23.886 6.223 25.411 hybrid contribution 0.219 0.881 -0.105 0.914 sum -5.818 -23.006 6.119 24.506 Atomic orbital electron populations 1.20587 0.87683 1.03532 1.03542 1.21006 0.99036 0.91610 1.09164 1.22699 0.91712 0.99013 0.90131 1.18631 0.93507 0.91660 1.08793 1.21229 0.93297 0.97567 0.97827 1.17612 0.90268 0.85850 1.03116 1.42357 1.26470 1.09577 1.53682 1.16165 0.84059 0.80783 0.79526 1.90853 1.22561 1.83181 1.53709 1.45102 1.21340 1.13011 1.57216 1.18992 0.94524 0.82491 0.91325 1.21277 1.03763 0.97941 1.35291 0.92082 1.25567 0.99933 0.95429 0.96430 1.69979 1.36309 1.05864 1.44906 0.85879 0.80003 0.79020 0.79124 1.19000 1.20172 1.18222 1.21190 1.02014 0.88662 0.97881 1.20915 0.89532 1.00524 1.04367 1.18201 0.92552 0.84614 0.99891 1.45217 1.06458 1.07805 1.64035 1.22280 0.99081 0.82176 1.04678 1.17166 0.81564 0.90867 0.78045 1.90830 1.66460 1.35491 1.53516 0.91762 0.89494 0.89884 0.82362 0.85041 0.73588 0.75612 0.96913 0.96857 0.91898 0.81060 0.80743 0.89659 0.90194 0.86726 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.85 9.99 71.24 0.71 -1.14 16 2 C -0.21 -4.81 5.89 -19.77 -0.12 -4.93 16 3 C -0.01 -0.33 9.76 23.79 0.23 -0.10 16 4 C -0.12 -2.90 5.87 -20.14 -0.12 -3.02 16 5 C -0.08 -2.04 8.47 22.65 0.19 -1.85 16 6 C 0.13 2.84 6.30 38.09 0.24 3.08 16 7 N -0.67 -15.62 5.35 -317.14 -1.70 -17.32 16 8 C 0.69 23.80 8.40 179.06 1.50 25.31 16 9 O -0.62 -26.08 13.77 -4.02 -0.06 -26.14 16 10 N -0.71 -26.08 5.55 -482.29 -2.68 -28.76 16 11 C 0.25 11.62 4.50 85.63 0.38 12.01 16 12 C -0.54 -28.75 9.83 25.60 0.25 -28.50 16 13 H 0.06 3.37 7.84 -2.91 -0.02 3.35 16 14 C 0.03 1.46 5.47 84.65 0.46 1.93 16 15 N -0.93 -54.30 13.96 21.45 0.30 -54.00 16 16 Si 0.94 42.70 27.47 68.60 1.88 44.59 16 17 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 18 H -0.28 -12.23 7.11 99.48 0.71 -11.52 16 19 H -0.26 -11.61 6.54 99.48 0.65 -10.96 16 20 C -0.08 -1.11 9.93 22.43 0.22 -0.89 16 21 C -0.13 -1.83 9.18 22.35 0.21 -1.62 16 22 C 0.15 2.99 6.53 39.00 0.25 3.25 16 23 N -0.52 -10.90 3.04 -665.19 -2.02 -12.92 16 24 C 0.06 0.78 9.84 127.77 1.26 2.04 16 25 C 0.53 13.86 7.40 85.00 0.63 14.49 16 26 O -0.58 -18.20 15.28 -4.96 -0.08 -18.28 16 27 H 0.06 1.41 7.05 -2.39 -0.02 1.39 16 28 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 29 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 30 H 0.16 2.93 8.06 -2.91 -0.02 2.90 16 31 H 0.13 4.09 6.21 -2.91 -0.02 4.07 16 32 H 0.43 6.55 8.84 -92.71 -0.82 5.73 16 33 H 0.41 12.60 8.34 -92.71 -0.77 11.83 16 34 H 0.01 0.63 7.20 -2.39 -0.02 0.62 16 35 H 0.01 0.65 7.57 -2.39 -0.02 0.63 16 36 H 0.27 14.81 8.31 -92.71 -0.77 14.03 16 37 H 0.17 1.25 8.06 -2.91 -0.02 1.23 16 38 H 0.18 1.07 6.15 -2.91 -0.02 1.05 16 39 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 40 H 0.08 1.28 7.34 -2.38 -0.02 1.27 16 41 H 0.11 0.77 6.16 -2.39 -0.01 0.76 16 Total: -1.00 -75.27 344.07 1.43 -73.85 By element: Atomic # 1 Polarization: 19.47 SS G_CDS: -0.55 Total: 18.92 kcal Atomic # 6 Polarization: 13.74 SS G_CDS: 6.31 Total: 20.05 kcal Atomic # 7 Polarization: -106.90 SS G_CDS: -6.09 Total: -113.00 kcal Atomic # 8 Polarization: -44.29 SS G_CDS: -0.13 Total: -44.42 kcal Atomic # 14 Polarization: 42.70 SS G_CDS: 1.88 Total: 44.59 kcal Total: -75.27 1.43 -73.85 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334709790.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.557 kcal (2) G-P(sol) polarization free energy of solvation -75.275 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.718 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.426 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.849 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.293 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds