Wall clock time and date at job start Tue Mar 31 2020 11:02:28
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50693 * 1
3 3 C 1.36517 * 119.77723 * 2 1
4 4 C 1.39670 * 119.87177 * 179.97438 * 3 2 1
5 5 C 1.46513 * 133.91744 * 179.97438 * 4 3 2
6 6 C 1.34228 * 107.01796 * 180.02562 * 5 4 3
7 7 N 1.36922 * 109.93403 * 0.02562 * 6 5 4
8 8 H 0.96997 * 125.07463 * 179.97438 * 7 6 5
9 9 C 1.37731 * 109.85738 * 359.97438 * 7 6 5
10 10 C 1.38978 * 133.43093 * 180.28265 * 9 7 6
11 11 C 1.38482 * 119.71442 * 180.19914 * 10 9 7
12 12 N 1.39749 * 119.74818 * 179.76953 * 11 10 9
13 13 C 1.34770 * 120.00226 * 325.46354 * 12 11 10
14 14 O 1.21386 * 120.00042 * 4.33372 * 13 12 11
15 15 C 1.49332 * 120.00476 * 184.34434 * 13 12 11
16 16 O 1.21359 * 119.99367 * 355.51771 * 15 13 12
17 17 N 1.34774 * 120.00129 * 175.24690 * 15 13 12
18 18 C 1.46498 * 120.00078 * 0.96404 * 17 15 13
19 19 C 1.46501 * 119.99867 * 180.96109 * 17 15 13
20 20 C 1.50699 * 109.46924 * 90.00245 * 19 17 15
21 21 H 1.08001 * 120.00201 * 359.97438 * 20 19 17
22 22 C 1.37874 * 120.00242 * 180.02562 * 20 19 17
23 23 N 1.31513 * 119.99839 * 359.97438 * 22 20 19
24 24 Si 1.86798 * 120.00189 * 179.97438 * 22 20 19
25 25 H 1.48499 * 109.47309 * 59.99839 * 24 22 20
26 26 H 1.48508 * 109.47062 * 179.97438 * 24 22 20
27 27 H 1.48500 * 109.46994 * 299.99452 * 24 22 20
28 28 H 1.09004 * 109.47410 * 270.02428 * 1 2 3
29 29 H 1.09005 * 109.46859 * 30.02364 * 1 2 3
30 30 H 1.09004 * 109.47508 * 150.02034 * 1 2 3
31 31 H 1.08000 * 120.06576 * 0.02562 * 3 2 1
32 32 H 1.07999 * 126.49134 * 0.06295 * 5 4 3
33 33 H 1.08000 * 125.03225 * 180.02562 * 6 5 4
34 34 H 1.07994 * 120.14296 * 359.94455 * 10 9 7
35 35 H 0.97000 * 120.00111 * 145.45652 * 12 11 10
36 36 H 1.08999 * 109.47097 * 83.66706 * 18 17 15
37 37 H 1.09002 * 109.47159 * 203.65878 * 18 17 15
38 38 H 1.08994 * 109.47152 * 323.66676 * 18 17 15
39 39 H 1.08993 * 109.47472 * 209.99982 * 19 17 15
40 40 H 1.09000 * 109.47114 * 330.00390 * 19 17 15
41 41 H 0.97001 * 120.00145 * 180.02562 * 23 22 20
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5069 0.0000 0.0000
3 6 2.1849 1.1849 0.0000
4 6 3.5816 1.1872 0.0005
5 6 4.5961 2.2443 0.0002
6 6 5.7942 1.6390 0.0005
7 7 5.6304 0.2796 0.0004
8 1 6.3518 -0.3688 0.0002
9 6 4.2883 -0.0299 0.0006
10 6 3.5841 -1.2281 0.0056
11 6 2.1994 -1.2104 0.0001
12 7 1.4906 -2.4148 0.0002
13 6 1.9800 -3.4849 -0.6569
14 8 3.0727 -3.4268 -1.1824
15 6 1.1780 -4.7419 -0.7388
16 8 0.1227 -4.8280 -0.1458
17 7 1.6236 -5.7788 -1.4756
18 6 2.9049 -5.6804 -2.1790
19 6 0.8267 -7.0042 -1.5729
20 6 -0.1128 -6.9005 -2.7466
21 1 -0.1163 -6.0106 -3.3585
22 6 -0.9687 -7.9411 -3.0386
23 7 -0.9649 -9.0246 -2.2932
24 14 -2.1338 -7.8122 -4.4930
25 1 -1.3496 -7.6318 -5.7411
26 1 -2.9416 -9.0545 -4.5918
27 1 -3.0362 -6.6483 -4.3027
28 1 -0.3634 0.0004 1.0277
29 1 -0.3633 0.8898 -0.5142
30 1 -0.3634 -0.8902 -0.5135
31 1 1.6424 2.1187 0.0004
32 1 4.4144 3.3089 0.0004
33 1 6.7463 2.1487 0.0008
34 1 4.1144 -2.1688 0.0097
35 1 0.6464 -2.4807 0.4733
36 1 3.7156 -5.9276 -1.4936
37 1 2.9133 -6.3766 -3.0177
38 1 3.0391 -4.6640 -2.5491
39 1 1.4892 -7.8584 -1.7123
40 1 0.2507 -7.1367 -0.6571
41 1 -1.5668 -9.7570 -2.4988
RHF calculation, no. of doubly occupied orbitals= 58
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000338832728.mol2 41
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 11:02:28
Heat of formation + Delta-G solvation = 6.196844 kcal
Electronic energy + Delta-G solvation = -25527.044014 eV
Core-core repulsion = 21794.164144 eV
Total energy + Delta-G solvation = -3732.879870 eV
No. of doubly occupied orbitals = 58
Molecular weight
(most abundant/longest-lived isotopes) = 315.137 amu
Computer time = 0.56 seconds
Orbital eigenvalues (eV)
-41.46634 -40.47050 -38.48393 -37.28431 -35.34240 -33.99026 -32.59133 -32.06281
-31.12958 -28.52822 -27.93390 -26.52118 -26.11653 -24.55495 -23.18113 -21.85158
-20.84906 -20.51716 -19.69176 -18.32061 -17.20785 -17.04032 -16.63163 -15.83955
-15.53894 -15.26823 -14.99945 -14.75383 -14.57516 -14.33701 -14.01203 -13.60174
-13.47638 -13.38173 -13.13659 -13.06963 -12.41741 -12.28333 -12.16110 -12.05595
-11.76494 -11.47894 -11.36546 -11.14093 -10.98257 -10.71444 -10.55856 -10.22687
-10.21496 -9.71882 -9.47868 -8.78862 -8.49522 -7.98939 -7.83423 -7.61277
-6.11117 -4.16799 0.97970 1.39641 1.94774 2.59284 2.69362 3.05165
3.29983 3.33850 3.37270 3.64863 3.84674 4.05926 4.40040 4.55890
4.71820 4.80221 4.90667 5.09527 5.23610 5.25966 5.30399 5.41518
5.58192 5.61327 5.78101 5.84224 5.95394 5.97779 6.09511 6.15278
6.25907 6.45614 6.49788 6.63956 6.68273 6.80185 7.06758 7.22714
7.26646 7.35843 7.39742 7.81754 7.92393 8.11616 8.18746 8.60950
8.87848 9.48320 10.97080
Molecular weight = 315.14amu
Principal moments of inertia in cm(-1)
A = 0.023399 B = 0.002932 C = 0.002773
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1196.342659 B = 9549.028579 C =10094.294490
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.115 4.115
2 C -0.125 4.125
3 C -0.058 4.058
4 C -0.121 4.121
5 C -0.203 4.203
6 C 0.045 3.955
7 N -0.596 5.596
8 H 0.415 0.585
9 C 0.109 3.891
10 C -0.131 4.131
11 C 0.166 3.834
12 N -0.646 5.646
13 C 0.508 3.492
14 O -0.504 6.504
15 C 0.495 3.505
16 O -0.524 6.524
17 N -0.561 5.561
18 C 0.072 3.928
19 C 0.242 3.758
20 C -0.532 4.532
21 H 0.059 0.941
22 C 0.063 3.937
23 N -0.893 5.893
24 Si 0.901 3.099
25 H -0.276 1.276
26 H -0.285 1.285
27 H -0.275 1.275
28 H 0.070 0.930
29 H 0.069 0.931
30 H 0.067 0.933
31 H 0.126 0.874
32 H 0.144 0.856
33 H 0.168 0.832
34 H 0.140 0.860
35 H 0.423 0.577
36 H 0.048 0.952
37 H 0.070 0.930
38 H 0.088 0.912
39 H 0.040 0.960
40 H 0.049 0.951
41 H 0.265 0.735
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 11.805 20.597 5.753 24.428
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.171 4.171
2 C -0.128 4.128
3 C -0.077 4.077
4 C -0.126 4.126
5 C -0.229 4.229
6 C -0.081 4.081
7 N -0.199 5.199
8 H 0.252 0.748
9 C 0.001 3.999
10 C -0.154 4.154
11 C 0.070 3.930
12 N -0.293 5.293
13 C 0.292 3.708
14 O -0.378 6.378
15 C 0.275 3.725
16 O -0.402 6.402
17 N -0.292 5.292
18 C -0.071 4.071
19 C 0.123 3.877
20 C -0.570 4.570
21 H 0.077 0.923
22 C -0.139 4.139
23 N -0.532 5.532
24 Si 0.728 3.272
25 H -0.201 1.201
26 H -0.211 1.211
27 H -0.201 1.201
28 H 0.089 0.911
29 H 0.088 0.912
30 H 0.086 0.914
31 H 0.144 0.856
32 H 0.162 0.838
33 H 0.185 0.815
34 H 0.158 0.842
35 H 0.262 0.738
36 H 0.067 0.933
37 H 0.089 0.911
38 H 0.106 0.894
39 H 0.058 0.942
40 H 0.067 0.933
41 H 0.075 0.925
Dipole moment (debyes) X Y Z Total
from point charges 12.020 20.217 5.669 24.194
hybrid contribution -0.559 -0.363 -0.683 0.954
sum 11.461 19.854 4.987 23.461
Atomic orbital electron populations
1.20736 0.90681 1.03292 1.02431 1.19199 0.96192 0.91286 1.06156
1.19885 0.91571 0.96966 0.99262 1.19191 0.93191 0.92473 1.07733
1.21649 0.90691 0.98115 1.12416 1.21792 0.99616 0.82260 1.04415
1.41797 1.05752 1.06962 1.65366 0.74808 1.17971 0.83605 0.94688
1.03626 1.20015 0.92252 0.96412 1.06692 1.17088 0.90060 0.84558
1.01282 1.43231 1.25797 1.08963 1.51302 1.20973 0.86653 0.85239
0.77969 1.90634 1.20469 1.82883 1.43855 1.19513 0.86178 0.84176
0.82631 1.90740 1.22334 1.81390 1.45735 1.48121 1.21192 1.15601
1.44289 1.22152 0.83946 1.04105 0.96866 1.19523 0.90443 0.78942
0.98767 1.21345 1.20462 1.02599 1.12635 0.92294 1.24926 0.96991
0.95048 0.96966 1.69917 1.38364 1.06119 1.38777 0.86510 0.80776
0.77498 0.82383 1.20146 1.21088 1.20066 0.91121 0.91178 0.91368
0.85620 0.83801 0.81467 0.84198 0.73822 0.93294 0.91121 0.89351
0.94159 0.93345 0.92496
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.11 -1.15 9.44 36.00 0.34 -0.81 16
2 C -0.13 -1.52 5.86 -104.79 -0.61 -2.14 16
3 C -0.06 -0.65 9.67 -39.67 -0.38 -1.04 16
4 C -0.12 -1.45 6.37 -105.08 -0.67 -2.12 16
5 C -0.20 -1.93 11.08 -37.66 -0.42 -2.35 16
6 C 0.05 0.36 11.82 -16.69 -0.20 0.16 16
7 N -0.60 -5.60 6.08 -10.64 -0.06 -5.67 16
8 H 0.42 2.86 8.96 -40.82 -0.37 2.49 16
9 C 0.11 1.36 7.27 -84.00 -0.61 0.75 16
10 C -0.13 -1.83 8.71 -39.22 -0.34 -2.17 16
11 C 0.17 2.33 6.29 -83.71 -0.53 1.80 16
12 N -0.65 -9.61 4.73 -10.28 -0.05 -9.66 16
13 C 0.51 8.92 7.60 -11.64 -0.09 8.83 16
14 O -0.50 -8.92 10.56 5.47 0.06 -8.86 16
15 C 0.49 10.44 7.73 -11.64 -0.09 10.35 16
16 O -0.52 -12.34 16.06 5.49 0.09 -12.25 16
17 N -0.56 -12.31 2.86 -183.52 -0.52 -12.84 16
18 C 0.07 1.31 9.44 59.85 0.56 1.88 16
19 C 0.24 6.27 5.14 -5.19 -0.03 6.24 16
20 C -0.53 -14.94 9.39 -34.44 -0.32 -15.26 16
21 H 0.06 1.66 7.81 -52.49 -0.41 1.25 16
22 C 0.06 1.78 5.46 -17.82 -0.10 1.69 16
23 N -0.89 -26.11 13.29 55.43 0.74 -25.37 16
24 Si 0.90 21.62 29.54 -169.99 -5.02 16.60 16
25 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16
26 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16
27 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16
28 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16
29 H 0.07 0.60 8.08 -51.93 -0.42 0.18 16
30 H 0.07 0.75 7.13 -51.93 -0.37 0.38 16
31 H 0.13 1.11 8.06 -52.49 -0.42 0.69 16
32 H 0.14 1.03 8.06 -52.49 -0.42 0.61 16
33 H 0.17 0.70 8.06 -52.49 -0.42 0.27 16
34 H 0.14 2.05 6.16 -52.49 -0.32 1.73 16
35 H 0.42 5.80 7.26 -40.82 -0.30 5.50 16
36 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16
37 H 0.07 1.26 8.02 -51.93 -0.42 0.84 16
38 H 0.09 1.57 5.53 -51.93 -0.29 1.28 16
39 H 0.04 1.05 8.07 -51.93 -0.42 0.63 16
40 H 0.05 1.38 7.41 -51.93 -0.38 1.00 16
41 H 0.27 7.33 8.31 -40.82 -0.34 6.99 16
LS Contribution 348.87 15.07 5.26 5.26
Total: -1.00 -33.20 348.87 -7.94 -41.15
By element:
Atomic # 1 Polarization: 10.77 SS G_CDS: -4.94 Total: 5.83 kcal
Atomic # 6 Polarization: 9.30 SS G_CDS: -3.48 Total: 5.82 kcal
Atomic # 7 Polarization: -53.64 SS G_CDS: 0.10 Total: -53.54 kcal
Atomic # 8 Polarization: -21.26 SS G_CDS: 0.15 Total: -21.11 kcal
Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.60 kcal
Total LS contribution 5.26 Total: 5.26 kcal
Total: -33.20 -7.94 -41.15 kcal
The number of atoms in the molecule is 41
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000338832728.mol2 41
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 47.342 kcal
(2) G-P(sol) polarization free energy of solvation -33.204 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.138 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.941 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.145 kcal
(6) G-S(sol) free energy of system = (1) + (5) 6.197 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.56 seconds