Wall clock time and date at job start Tue Mar 31 2020 11:02:27
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50693 * 1
3 3 C 1.36517 * 119.77723 * 2 1
4 4 C 1.39670 * 119.87177 * 179.97438 * 3 2 1
5 5 C 1.46513 * 133.91744 * 179.97438 * 4 3 2
6 6 C 1.34228 * 107.01796 * 180.02562 * 5 4 3
7 7 N 1.36922 * 109.93403 * 0.02562 * 6 5 4
8 8 H 0.96997 * 125.07463 * 179.97438 * 7 6 5
9 9 C 1.37731 * 109.85738 * 359.97438 * 7 6 5
10 10 C 1.38978 * 133.43093 * 180.28265 * 9 7 6
11 11 C 1.38482 * 119.71442 * 180.19914 * 10 9 7
12 12 N 1.39749 * 119.74818 * 179.76953 * 11 10 9
13 13 C 1.34770 * 120.00226 * 325.46354 * 12 11 10
14 14 O 1.21386 * 120.00042 * 4.33372 * 13 12 11
15 15 C 1.49332 * 120.00476 * 184.34434 * 13 12 11
16 16 O 1.21359 * 119.99367 * 355.51771 * 15 13 12
17 17 N 1.34774 * 120.00129 * 175.24690 * 15 13 12
18 18 C 1.46498 * 120.00078 * 0.96404 * 17 15 13
19 19 C 1.46501 * 119.99867 * 180.96109 * 17 15 13
20 20 C 1.50699 * 109.46924 * 90.00245 * 19 17 15
21 21 H 1.08001 * 120.00201 * 359.97438 * 20 19 17
22 22 C 1.37874 * 120.00242 * 180.02562 * 20 19 17
23 23 N 1.31513 * 119.99839 * 359.97438 * 22 20 19
24 24 Si 1.86798 * 120.00189 * 179.97438 * 22 20 19
25 25 H 1.48499 * 109.47309 * 59.99839 * 24 22 20
26 26 H 1.48508 * 109.47062 * 179.97438 * 24 22 20
27 27 H 1.48500 * 109.46994 * 299.99452 * 24 22 20
28 28 H 1.09004 * 109.47410 * 270.02428 * 1 2 3
29 29 H 1.09005 * 109.46859 * 30.02364 * 1 2 3
30 30 H 1.09004 * 109.47508 * 150.02034 * 1 2 3
31 31 H 1.08000 * 120.06576 * 0.02562 * 3 2 1
32 32 H 1.07999 * 126.49134 * 0.06295 * 5 4 3
33 33 H 1.08000 * 125.03225 * 180.02562 * 6 5 4
34 34 H 1.07994 * 120.14296 * 359.94455 * 10 9 7
35 35 H 0.97000 * 120.00111 * 145.45652 * 12 11 10
36 36 H 1.08999 * 109.47097 * 83.66706 * 18 17 15
37 37 H 1.09002 * 109.47159 * 203.65878 * 18 17 15
38 38 H 1.08994 * 109.47152 * 323.66676 * 18 17 15
39 39 H 1.08993 * 109.47472 * 209.99982 * 19 17 15
40 40 H 1.09000 * 109.47114 * 330.00390 * 19 17 15
41 41 H 0.97001 * 120.00145 * 180.02562 * 23 22 20
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5069 0.0000 0.0000
3 6 2.1849 1.1849 0.0000
4 6 3.5816 1.1872 0.0005
5 6 4.5961 2.2443 0.0002
6 6 5.7942 1.6390 0.0005
7 7 5.6304 0.2796 0.0004
8 1 6.3518 -0.3688 0.0002
9 6 4.2883 -0.0299 0.0006
10 6 3.5841 -1.2281 0.0056
11 6 2.1994 -1.2104 0.0001
12 7 1.4906 -2.4148 0.0002
13 6 1.9800 -3.4849 -0.6569
14 8 3.0727 -3.4268 -1.1824
15 6 1.1780 -4.7419 -0.7388
16 8 0.1227 -4.8280 -0.1458
17 7 1.6236 -5.7788 -1.4756
18 6 2.9049 -5.6804 -2.1790
19 6 0.8267 -7.0042 -1.5729
20 6 -0.1128 -6.9005 -2.7466
21 1 -0.1163 -6.0106 -3.3585
22 6 -0.9687 -7.9411 -3.0386
23 7 -0.9649 -9.0246 -2.2932
24 14 -2.1338 -7.8122 -4.4930
25 1 -1.3496 -7.6318 -5.7411
26 1 -2.9416 -9.0545 -4.5918
27 1 -3.0362 -6.6483 -4.3027
28 1 -0.3634 0.0004 1.0277
29 1 -0.3633 0.8898 -0.5142
30 1 -0.3634 -0.8902 -0.5135
31 1 1.6424 2.1187 0.0004
32 1 4.4144 3.3089 0.0004
33 1 6.7463 2.1487 0.0008
34 1 4.1144 -2.1688 0.0097
35 1 0.6464 -2.4807 0.4733
36 1 3.7156 -5.9276 -1.4936
37 1 2.9133 -6.3766 -3.0177
38 1 3.0391 -4.6640 -2.5491
39 1 1.4892 -7.8584 -1.7123
40 1 0.2507 -7.1367 -0.6571
41 1 -1.5668 -9.7570 -2.4988
RHF calculation, no. of doubly occupied orbitals= 58
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000338832728.mol2 41
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 11:02:27
Heat of formation + Delta-G solvation = -15.271849 kcal
Electronic energy + Delta-G solvation = -25527.974966 eV
Core-core repulsion = 21794.164144 eV
Total energy + Delta-G solvation = -3733.810822 eV
No. of doubly occupied orbitals = 58
Molecular weight
(most abundant/longest-lived isotopes) = 315.137 amu
Computer time = 0.60 seconds
Orbital eigenvalues (eV)
-42.46015 -41.72499 -39.93635 -38.47581 -37.00018 -35.30778 -34.63876 -32.94848
-31.94837 -30.16348 -29.25755 -27.75746 -27.27872 -26.24098 -24.57391 -23.17013
-21.83855 -21.29281 -21.06265 -19.45385 -18.77525 -18.44739 -18.27765 -17.37847
-17.08676 -16.69941 -16.28118 -16.05018 -15.78171 -15.43221 -15.22133 -14.93116
-14.63294 -14.30173 -14.21073 -14.15300 -13.89731 -13.83447 -13.62861 -13.32418
-13.07815 -12.98864 -12.64021 -12.61868 -12.41391 -12.29831 -12.24315 -11.95961
-11.77037 -11.21085 -10.66540 -10.48026 -10.27922 -9.64440 -8.87781 -8.49308
-8.26156 -6.41307 -0.07302 0.37169 0.68711 1.27246 1.38764 1.41733
1.49967 1.86279 2.11881 2.27183 2.36890 2.62459 2.87546 3.04479
3.27114 3.76597 3.97701 4.09692 4.30747 4.34500 4.40303 4.52485
4.58589 4.65437 4.78858 4.83157 4.84313 4.89156 5.01936 5.05425
5.12657 5.18601 5.25255 5.31634 5.40884 5.57195 5.67916 5.77861
5.87314 5.96189 5.97626 6.20342 6.36074 6.62437 6.69331 6.73618
6.95177 7.29266 8.81419
Molecular weight = 315.14amu
Principal moments of inertia in cm(-1)
A = 0.023399 B = 0.002932 C = 0.002773
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1196.342659 B = 9549.028579 C =10094.294490
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.113 4.113
2 C -0.130 4.130
3 C -0.059 4.059
4 C -0.133 4.133
5 C -0.222 4.222
6 C 0.062 3.938
7 N -0.592 5.592
8 H 0.426 0.574
9 C 0.085 3.915
10 C -0.140 4.140
11 C 0.137 3.863
12 N -0.631 5.631
13 C 0.517 3.483
14 O -0.507 6.507
15 C 0.489 3.511
16 O -0.556 6.556
17 N -0.570 5.570
18 C 0.076 3.924
19 C 0.255 3.745
20 C -0.550 4.550
21 H 0.054 0.946
22 C 0.013 3.987
23 N -0.924 5.924
24 Si 0.968 3.032
25 H -0.263 1.263
26 H -0.276 1.276
27 H -0.274 1.274
28 H 0.084 0.916
29 H 0.088 0.912
30 H 0.052 0.948
31 H 0.152 0.848
32 H 0.167 0.833
33 H 0.211 0.789
34 H 0.126 0.874
35 H 0.427 0.573
36 H 0.068 0.932
37 H 0.071 0.929
38 H 0.095 0.905
39 H 0.034 0.966
40 H 0.014 0.986
41 H 0.270 0.730
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 12.791 23.343 5.025 27.088
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.170 4.170
2 C -0.133 4.133
3 C -0.078 4.078
4 C -0.138 4.138
5 C -0.247 4.247
6 C -0.064 4.064
7 N -0.196 5.196
8 H 0.264 0.736
9 C -0.024 4.024
10 C -0.163 4.163
11 C 0.043 3.957
12 N -0.277 5.277
13 C 0.299 3.701
14 O -0.382 6.382
15 C 0.271 3.729
16 O -0.436 6.436
17 N -0.301 5.301
18 C -0.066 4.066
19 C 0.135 3.865
20 C -0.589 4.589
21 H 0.072 0.928
22 C -0.187 4.187
23 N -0.563 5.563
24 Si 0.792 3.208
25 H -0.188 1.188
26 H -0.201 1.201
27 H -0.200 1.200
28 H 0.103 0.897
29 H 0.106 0.894
30 H 0.071 0.929
31 H 0.170 0.830
32 H 0.185 0.815
33 H 0.228 0.772
34 H 0.144 0.856
35 H 0.266 0.734
36 H 0.087 0.913
37 H 0.090 0.910
38 H 0.113 0.887
39 H 0.052 0.948
40 H 0.032 0.968
41 H 0.079 0.921
Dipole moment (debyes) X Y Z Total
from point charges 13.051 22.997 4.948 26.901
hybrid contribution -0.740 -1.098 -0.378 1.377
sum 12.311 21.899 4.569 25.534
Atomic orbital electron populations
1.20769 0.89389 1.03412 1.03389 1.19407 0.97197 0.90816 1.05855
1.20210 0.91733 0.97594 0.98287 1.19672 0.93979 0.93233 1.06938
1.22014 0.90355 0.98919 1.13398 1.22540 1.01098 0.81384 1.01385
1.41951 1.04991 1.08075 1.64608 0.73584 1.18071 0.85193 0.94448
1.04671 1.19975 0.92446 0.96606 1.07279 1.17296 0.90331 0.84433
1.03684 1.43046 1.25767 1.08699 1.50201 1.20120 0.86284 0.84685
0.78961 1.90627 1.20256 1.82812 1.44554 1.20127 0.86083 0.85088
0.81582 1.90706 1.23881 1.82208 1.46810 1.48104 1.22095 1.14833
1.45053 1.22278 0.82641 1.04575 0.97073 1.19060 0.90221 0.80628
0.96569 1.21595 1.21402 1.02619 1.13251 0.92816 1.25817 0.98506
0.94556 0.99774 1.70026 1.39168 1.06799 1.40334 0.85454 0.78544
0.77653 0.79113 1.18797 1.20119 1.19981 0.89736 0.89360 0.92880
0.83016 0.81523 0.77209 0.85603 0.73369 0.91326 0.91016 0.88664
0.94769 0.96827 0.92138
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.11 -2.14 9.44 71.23 0.67 -1.46 16
2 C -0.13 -3.04 5.86 -19.98 -0.12 -3.15 16
3 C -0.06 -1.24 9.67 22.21 0.21 -1.02 16
4 C -0.13 -2.94 6.37 -20.16 -0.13 -3.07 16
5 C -0.22 -3.52 11.08 23.51 0.26 -3.26 16
6 C 0.06 0.77 11.82 82.98 0.98 1.75 16
7 N -0.59 -9.88 6.08 -187.57 -1.14 -11.02 16
8 H 0.43 5.05 8.96 -92.71 -0.83 4.22 16
9 C 0.08 2.03 7.27 39.01 0.28 2.31 16
10 C -0.14 -3.93 8.71 22.51 0.20 -3.73 16
11 C 0.14 3.85 6.29 38.23 0.24 4.09 16
12 N -0.63 -19.17 4.73 -304.78 -1.44 -20.61 16
13 C 0.52 18.56 7.60 87.23 0.66 19.22 16
14 O -0.51 -18.10 10.56 -3.36 -0.04 -18.14 16
15 C 0.49 21.37 7.73 87.23 0.67 22.04 16
16 O -0.56 -27.35 16.06 -3.28 -0.05 -27.40 16
17 N -0.57 -25.78 2.86 -852.89 -2.44 -28.21 16
18 C 0.08 2.77 9.44 127.77 1.21 3.97 16
19 C 0.26 13.78 5.14 85.63 0.44 14.22 16
20 C -0.55 -31.60 9.39 25.60 0.24 -31.36 16
21 H 0.05 3.07 7.81 -2.91 -0.02 3.05 16
22 C 0.01 0.76 5.46 84.65 0.46 1.22 16
23 N -0.92 -54.93 13.29 21.45 0.28 -54.65 16
24 Si 0.97 44.38 29.54 68.60 2.03 46.41 16
25 H -0.26 -11.47 7.11 99.48 0.71 -10.77 16
26 H -0.28 -12.17 7.11 99.48 0.71 -11.46 16
27 H -0.27 -12.48 7.11 99.48 0.71 -11.77 16
28 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16
29 H 0.09 1.33 8.08 -2.38 -0.02 1.31 16
30 H 0.05 1.16 7.13 -2.38 -0.02 1.14 16
31 H 0.15 2.26 8.06 -2.91 -0.02 2.23 16
32 H 0.17 1.77 8.06 -2.91 -0.02 1.74 16
33 H 0.21 0.68 8.06 -2.91 -0.02 0.66 16
34 H 0.13 3.78 6.16 -2.91 -0.02 3.77 16
35 H 0.43 12.08 7.26 -92.71 -0.67 11.41 16
36 H 0.07 2.21 8.14 -2.39 -0.02 2.19 16
37 H 0.07 2.56 8.02 -2.39 -0.02 2.55 16
38 H 0.10 3.36 5.53 -2.39 -0.01 3.35 16
39 H 0.03 1.86 8.07 -2.39 -0.02 1.84 16
40 H 0.01 0.82 7.41 -2.39 -0.02 0.80 16
41 H 0.27 15.01 8.31 -92.71 -0.77 14.24 16
Total: -1.00 -73.11 348.87 3.09 -70.02
By element:
Atomic # 1 Polarization: 22.23 SS G_CDS: -0.41 Total: 21.83 kcal
Atomic # 6 Polarization: 15.48 SS G_CDS: 6.29 Total: 21.77 kcal
Atomic # 7 Polarization: -109.76 SS G_CDS: -4.73 Total: -114.49 kcal
Atomic # 8 Polarization: -45.45 SS G_CDS: -0.09 Total: -45.54 kcal
Atomic # 14 Polarization: 44.38 SS G_CDS: 2.03 Total: 46.41 kcal
Total: -73.11 3.09 -70.02 kcal
The number of atoms in the molecule is 41
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000338832728.mol2 41
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 54.752 kcal
(2) G-P(sol) polarization free energy of solvation -73.109 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.357 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.086 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.024 kcal
(6) G-S(sol) free energy of system = (1) + (5) -15.272 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.60 seconds