Wall clock time and date at job start Tue Mar 31 2020 11:01:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.34241 * 125.03171 * 2 1 4 4 C 1.46506 * 107.00928 * 180.02562 * 3 2 1 5 5 C 1.39607 * 133.92061 * 179.97438 * 4 3 2 6 6 C 1.38276 * 119.58519 * 179.79418 * 5 4 3 7 7 N 1.39904 * 119.89225 * 180.23965 * 6 5 4 8 8 C 1.34777 * 120.00131 * 29.52255 * 7 6 5 9 9 O 1.21388 * 119.99651 * 5.62799 * 8 7 6 10 10 C 1.49331 * 120.00336 * 185.63471 * 8 7 6 11 11 O 1.21362 * 120.00071 * 0.67101 * 10 8 7 12 12 N 1.34779 * 120.00213 * 180.67556 * 10 8 7 13 13 C 1.46494 * 119.99977 * 354.39472 * 12 10 8 14 14 C 1.46504 * 119.99709 * 174.39938 * 12 10 8 15 15 C 1.50694 * 109.47161 * 90.00001 * 14 12 10 16 16 H 1.07998 * 120.00336 * 359.97438 * 15 14 12 17 17 C 1.37885 * 119.99794 * 179.97438 * 15 14 12 18 18 N 1.31509 * 119.99830 * 0.02562 * 17 15 14 19 19 Si 1.86797 * 119.99896 * 179.97438 * 17 15 14 20 20 H 1.48506 * 109.47141 * 60.00091 * 19 17 15 21 21 H 1.48495 * 109.47112 * 180.02562 * 19 17 15 22 22 H 1.48501 * 109.47491 * 300.00113 * 19 17 15 23 23 C 1.39468 * 120.22012 * 0.48905 * 6 5 4 24 24 C 1.37611 * 120.59999 * 359.49557 * 23 6 5 25 25 C 1.39153 * 120.02324 * 0.25132 * 24 23 6 26 26 N 1.36807 * 125.02991 * 180.02562 * 2 1 3 27 27 H 0.97004 * 125.06253 * 0.02562 * 26 2 1 28 28 H 1.09003 * 109.46919 * 270.02885 * 1 2 3 29 29 H 1.09004 * 109.46776 * 30.02625 * 1 2 3 30 30 H 1.08995 * 109.46973 * 150.02331 * 1 2 3 31 31 H 1.07998 * 126.48807 * 359.97438 * 3 2 1 32 32 H 1.08000 * 120.21340 * 0.03205 * 5 4 3 33 33 H 0.97000 * 120.00443 * 209.52835 * 7 6 5 34 34 H 1.08995 * 109.47405 * 83.75775 * 13 12 10 35 35 H 1.09003 * 109.47122 * 203.76535 * 13 12 10 36 36 H 1.09004 * 109.47274 * 323.76070 * 13 12 10 37 37 H 1.09007 * 109.46315 * 209.99525 * 14 12 10 38 38 H 1.08998 * 109.47366 * 329.99329 * 14 12 10 39 39 H 0.97003 * 119.99478 * 180.02562 * 18 17 15 40 40 H 1.08004 * 119.70277 * 179.77422 * 23 6 5 41 41 H 1.08001 * 119.98641 * 180.23868 * 24 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2776 1.0992 0.0000 4 6 3.6708 0.6459 -0.0006 5 6 4.9028 1.3026 -0.0014 6 6 6.0709 0.5625 0.0025 7 7 7.3090 1.2139 0.0069 8 6 7.4305 2.4264 0.5827 9 8 6.4939 2.9084 1.1860 10 6 8.7172 3.1771 0.4783 11 8 9.6496 2.7007 -0.1354 12 7 8.8432 4.3836 1.0657 13 6 7.6832 5.0137 1.7009 14 6 10.1402 5.0649 1.0688 15 6 10.2555 5.9311 -0.1589 16 1 9.4441 5.9700 -0.8706 17 6 11.3970 6.6741 -0.3736 18 7 12.3852 6.6264 0.4928 19 14 11.5403 7.7473 -1.8958 20 1 10.4505 8.7562 -1.8946 21 1 12.8549 8.4379 -1.8926 22 1 11.4296 6.9006 -3.1107 23 6 6.0189 -0.8312 -0.0032 24 6 4.8091 -1.4870 -0.0023 25 6 3.6228 -0.7597 -0.0009 26 7 2.2923 -1.1202 -0.0005 27 1 1.9620 -2.0323 -0.0013 28 1 -0.3633 0.0005 1.0277 29 1 -0.3633 0.8898 -0.5143 30 1 -0.3633 -0.8902 -0.5135 31 1 1.9353 2.1235 -0.0004 32 1 4.9435 2.3818 -0.0010 33 1 8.0800 0.7930 -0.4046 34 1 7.5691 4.6274 2.7136 35 1 7.8310 6.0930 1.7381 36 1 6.7863 4.7895 1.1233 37 1 10.2219 5.6861 1.9608 38 1 10.9397 4.3241 1.0673 39 1 13.1881 7.1494 0.3419 40 1 6.9364 -1.4009 -0.0038 41 1 4.7804 -2.5667 -0.0028 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000338836899.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:01:23 Heat of formation + Delta-G solvation = -19.084927 kcal Electronic energy + Delta-G solvation = -25100.897524 eV Core-core repulsion = 21366.921355 eV Total energy + Delta-G solvation = -3733.976170 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.137 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.40980 -41.78639 -39.87785 -38.20312 -36.94684 -35.25836 -34.62393 -32.93752 -31.76040 -30.21716 -29.63667 -27.95593 -27.50129 -26.18893 -24.31848 -23.07395 -22.32093 -21.26631 -20.80409 -19.03734 -18.74625 -18.64114 -18.25521 -17.41218 -17.01712 -16.77104 -16.37456 -15.94574 -15.73213 -15.40972 -15.20542 -14.93256 -14.55139 -14.24765 -14.15987 -13.92385 -13.83399 -13.78533 -13.55887 -13.43045 -13.28456 -12.96606 -12.88092 -12.76232 -12.60765 -12.25718 -12.22619 -11.90686 -11.76196 -10.99698 -10.65960 -10.65063 -10.32446 -9.64017 -8.82832 -8.50373 -8.24724 -6.39280 0.01860 0.20089 0.76382 1.33358 1.39152 1.42338 1.50502 1.74469 2.14028 2.19878 2.37560 2.61174 2.90198 3.05713 3.28846 3.74445 3.89509 4.15749 4.28637 4.40358 4.44384 4.47861 4.51743 4.60125 4.68263 4.80808 4.85535 4.94230 5.02693 5.09255 5.12767 5.14861 5.23217 5.30587 5.38085 5.44159 5.68784 5.76509 5.82413 5.98657 6.02221 6.17163 6.40003 6.64975 6.73564 6.75139 6.98305 7.30838 8.82767 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.024925 B = 0.002602 C = 0.002511 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1123.109009 B =10756.722345 C =11146.370004 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 C 0.096 3.904 3 C -0.241 4.241 4 C -0.113 4.113 5 C -0.102 4.102 6 C 0.101 3.899 7 N -0.631 5.631 8 C 0.514 3.486 9 O -0.508 6.508 10 C 0.489 3.511 11 O -0.555 6.555 12 N -0.573 5.573 13 C 0.083 3.917 14 C 0.257 3.743 15 C -0.548 4.548 16 H 0.052 0.948 17 C 0.012 3.988 18 N -0.924 5.924 19 Si 0.968 3.032 20 H -0.263 1.263 21 H -0.276 1.276 22 H -0.276 1.276 23 C -0.120 4.120 24 C -0.099 4.099 25 C 0.072 3.928 26 N -0.582 5.582 27 H 0.430 0.570 28 H 0.090 0.910 29 H 0.092 0.908 30 H 0.088 0.912 31 H 0.147 0.853 32 H 0.117 0.883 33 H 0.428 0.572 34 H 0.067 0.933 35 H 0.072 0.928 36 H 0.089 0.911 37 H 0.035 0.965 38 H 0.012 0.988 39 H 0.269 0.731 40 H 0.157 0.843 41 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.232 -18.135 -0.378 30.268 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.013 4.013 3 C -0.266 4.266 4 C -0.118 4.118 5 C -0.123 4.123 6 C 0.007 3.993 7 N -0.278 5.278 8 C 0.297 3.703 9 O -0.384 6.384 10 C 0.271 3.729 11 O -0.434 6.434 12 N -0.304 5.304 13 C -0.059 4.059 14 C 0.136 3.864 15 C -0.586 4.586 16 H 0.071 0.929 17 C -0.188 4.188 18 N -0.563 5.563 19 Si 0.792 3.208 20 H -0.188 1.188 21 H -0.201 1.201 22 H -0.202 1.202 23 C -0.141 4.141 24 C -0.119 4.119 25 C -0.035 4.035 26 N -0.187 5.187 27 H 0.270 0.730 28 H 0.108 0.892 29 H 0.111 0.889 30 H 0.107 0.893 31 H 0.165 0.835 32 H 0.135 0.865 33 H 0.267 0.733 34 H 0.085 0.915 35 H 0.091 0.909 36 H 0.108 0.892 37 H 0.053 0.947 38 H 0.031 0.969 39 H 0.078 0.922 40 H 0.175 0.825 41 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -24.262 -18.009 -0.204 30.216 hybrid contribution 1.044 0.441 -0.721 1.343 sum -23.218 -17.568 -0.925 29.130 Atomic orbital electron populations 1.20613 0.84672 1.05122 1.04378 1.20837 0.95021 0.85073 1.00355 1.21681 0.89949 0.99098 1.15829 1.19289 0.93635 0.93210 1.05668 1.20490 0.90213 0.99882 1.01755 1.17647 0.83704 0.92285 1.05641 1.43054 1.11988 1.17509 1.55225 1.20090 0.88086 0.82687 0.79460 1.90679 1.40582 1.66890 1.40252 1.20179 0.88284 0.83198 0.81242 1.90706 1.41742 1.69195 1.41801 1.48112 1.13176 1.16962 1.52103 1.22157 0.87226 0.98273 0.98240 1.19053 0.79032 0.91268 0.97010 1.21583 1.02603 1.26623 1.07803 0.92934 1.25818 0.94823 0.98110 1.00002 1.70025 1.06840 1.42021 1.37443 0.85455 0.77896 0.78558 0.78845 1.18772 1.20073 1.20165 1.20801 0.99396 0.90779 1.03100 1.20109 0.87940 1.00545 1.03345 1.18427 0.85956 0.93535 1.05623 1.41718 1.02981 1.09001 1.65037 0.72995 0.89173 0.88882 0.89319 0.83489 0.86542 0.73336 0.91473 0.90902 0.89226 0.94701 0.96941 0.92170 0.82548 0.82109 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.60 10.39 71.24 0.74 0.14 16 2 C 0.10 1.48 7.08 40.87 0.29 1.77 16 3 C -0.24 -5.33 10.95 23.51 0.26 -5.07 16 4 C -0.11 -3.00 6.37 -20.20 -0.13 -3.13 16 5 C -0.10 -3.13 8.72 22.61 0.20 -2.93 16 6 C 0.10 2.82 6.35 38.16 0.24 3.07 16 7 N -0.63 -19.17 5.34 -304.79 -1.63 -20.80 16 8 C 0.51 18.91 7.52 87.23 0.66 19.57 16 9 O -0.51 -19.05 10.70 -3.36 -0.04 -19.08 16 10 C 0.49 21.71 7.72 87.23 0.67 22.39 16 11 O -0.55 -27.65 16.12 -3.28 -0.05 -27.70 16 12 N -0.57 -26.36 2.86 -852.87 -2.44 -28.80 16 13 C 0.08 3.10 9.27 127.77 1.18 4.29 16 14 C 0.26 13.99 5.09 85.63 0.44 14.42 16 15 C -0.55 -31.82 9.39 25.60 0.24 -31.58 16 16 H 0.05 3.05 7.81 -2.91 -0.02 3.03 16 17 C 0.01 0.70 5.46 84.66 0.46 1.16 16 18 N -0.92 -55.29 13.29 21.45 0.28 -55.01 16 19 Si 0.97 44.94 29.54 68.60 2.03 46.96 16 20 H -0.26 -11.60 7.11 99.48 0.71 -10.89 16 21 H -0.28 -12.27 7.11 99.48 0.71 -11.56 16 22 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 23 C -0.12 -2.48 9.91 22.42 0.22 -2.25 16 24 C -0.10 -1.73 10.06 22.34 0.22 -1.50 16 25 C 0.07 1.49 7.27 39.01 0.28 1.78 16 26 N -0.58 -8.30 6.08 -175.80 -1.07 -9.37 16 27 H 0.43 2.91 8.96 -92.71 -0.83 2.08 16 28 H 0.09 0.44 8.14 -2.39 -0.02 0.42 16 29 H 0.09 0.52 8.14 -2.39 -0.02 0.50 16 30 H 0.09 0.25 8.14 -2.39 -0.02 0.23 16 31 H 0.15 2.99 8.06 -2.91 -0.02 2.97 16 32 H 0.12 4.01 6.12 -2.91 -0.02 3.99 16 33 H 0.43 11.63 8.28 -92.71 -0.77 10.86 16 34 H 0.07 2.27 8.13 -2.39 -0.02 2.25 16 35 H 0.07 2.66 8.03 -2.39 -0.02 2.64 16 36 H 0.09 3.24 5.84 -2.38 -0.01 3.22 16 37 H 0.04 1.91 8.07 -2.38 -0.02 1.89 16 38 H 0.01 0.76 7.51 -2.39 -0.02 0.74 16 39 H 0.27 15.10 8.31 -92.71 -0.77 14.33 16 40 H 0.16 2.35 8.06 -2.91 -0.02 2.33 16 41 H 0.16 1.57 8.06 -2.91 -0.02 1.55 16 Total: -1.00 -75.74 352.45 2.56 -73.18 By element: Atomic # 1 Polarization: 19.01 SS G_CDS: -0.51 Total: 18.51 kcal Atomic # 6 Polarization: 16.13 SS G_CDS: 5.98 Total: 22.11 kcal Atomic # 7 Polarization: -109.13 SS G_CDS: -4.85 Total: -113.97 kcal Atomic # 8 Polarization: -46.69 SS G_CDS: -0.09 Total: -46.78 kcal Atomic # 14 Polarization: 44.94 SS G_CDS: 2.03 Total: 46.96 kcal Total: -75.74 2.56 -73.18 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000338836899.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.094 kcal (2) G-P(sol) polarization free energy of solvation -75.742 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.648 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.563 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.179 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.085 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds