Wall clock time and date at job start Tue Mar 31 2020 10:45:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13593 * 1 3 3 C 1.43203 * 179.97438 * 2 1 4 4 C 1.40298 * 120.50526 * 64.33137 * 3 2 1 5 5 C 1.37986 * 118.35077 * 180.22867 * 4 3 2 6 6 C 1.39138 * 119.27078 * 359.50557 * 5 4 3 7 7 O 1.35545 * 119.51847 * 180.22970 * 6 5 4 8 8 C 1.42898 * 116.99713 * 180.26927 * 7 6 5 9 9 H 1.09006 * 110.64321 * 31.69292 * 8 7 6 10 10 C 1.55156 * 110.72085 * 268.54844 * 8 7 6 11 11 C 1.54910 * 101.58076 * 206.13709 * 10 8 7 12 12 N 1.47426 * 104.83135 * 37.00687 * 11 10 8 13 13 C 1.34781 * 125.64837 * 155.90870 * 12 11 10 14 14 O 1.21278 * 120.00190 * 179.97438 * 13 12 11 15 15 C 1.50704 * 120.00023 * 359.97407 * 13 12 11 16 16 C 1.52998 * 109.47272 * 180.02562 * 15 13 12 17 17 C 1.50697 * 109.47150 * 180.02562 * 16 15 13 18 18 H 1.08002 * 120.00005 * 359.97438 * 17 16 15 19 19 C 1.37878 * 120.00020 * 180.02562 * 17 16 15 20 20 N 1.31519 * 119.99924 * 359.97438 * 19 17 16 21 21 Si 1.86797 * 119.99974 * 179.97438 * 19 17 16 22 22 H 1.48501 * 109.47587 * 89.99555 * 21 19 17 23 23 H 1.48497 * 109.47247 * 209.99787 * 21 19 17 24 24 H 1.48503 * 109.47276 * 329.99813 * 21 19 17 25 25 C 1.47020 * 108.70595 * 335.87329 * 12 11 10 26 26 N 1.32382 * 120.95840 * 0.50396 * 6 5 4 27 27 C 1.31691 * 121.80730 * 359.75020 * 26 6 5 28 28 H 1.08002 * 120.82034 * 359.94880 * 4 3 2 29 29 H 1.07996 * 120.36102 * 179.72020 * 5 4 3 30 30 H 1.09002 * 111.00324 * 324.20569 * 10 8 7 31 31 H 1.09001 * 111.00697 * 88.02621 * 10 8 7 32 32 H 1.09003 * 110.37186 * 155.84560 * 11 10 8 33 33 H 1.09004 * 110.36698 * 278.17533 * 11 10 8 34 34 H 1.08997 * 109.47199 * 300.00713 * 15 13 12 35 35 H 1.08999 * 109.46735 * 60.00204 * 15 13 12 36 36 H 1.08998 * 109.46846 * 300.00090 * 16 15 13 37 37 H 1.08991 * 109.47191 * 59.99640 * 16 15 13 38 38 H 0.96996 * 119.99645 * 180.02562 * 20 19 17 39 39 H 1.08998 * 109.88391 * 241.63996 * 25 12 11 40 40 H 1.08993 * 109.88150 * 120.47489 * 25 12 11 41 41 H 1.07995 * 119.69021 * 179.97438 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2804 -0.5226 -1.0895 5 6 4.6592 -0.5039 -1.0406 6 6 5.2932 0.0380 0.0731 7 8 6.6475 0.0632 0.1242 8 6 7.2420 0.6264 1.2953 9 1 6.6128 0.4510 2.1680 10 6 7.5032 2.1436 1.1029 11 6 8.6826 2.3823 2.0785 12 7 9.5078 1.1649 1.9780 13 6 10.8225 1.0812 2.2633 14 8 11.4026 0.0229 2.1445 15 6 11.5715 2.3029 2.7298 16 6 13.0358 1.9380 2.9818 17 6 13.7846 3.1595 3.4490 18 1 13.2678 4.1020 3.5551 19 6 15.1296 3.0742 3.7399 20 7 15.7590 1.9267 3.6102 21 14 16.0580 4.5885 4.3183 22 1 15.9964 4.6711 5.7997 23 1 17.4756 4.4951 3.8862 24 1 15.4399 5.8033 3.7288 25 6 8.6592 0.0568 1.5158 26 7 4.5930 0.5245 1.0857 27 6 3.2761 0.5223 1.0835 28 1 2.7623 -0.9341 -1.9432 29 1 5.2399 -0.9024 -1.8594 30 1 7.7955 2.3626 0.0758 31 1 6.6312 2.7301 1.3923 32 1 9.2573 3.2565 1.7725 33 1 8.3134 2.5073 3.0965 34 1 11.5167 3.0770 1.9644 35 1 11.1247 2.6724 3.6528 36 1 13.0907 1.1638 3.7471 37 1 13.4822 1.5687 2.0587 38 1 16.7051 1.8667 3.8153 39 1 8.6299 -0.7279 2.2718 40 1 9.0483 -0.3423 0.5792 41 1 2.7391 0.9276 1.9283 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000341424730.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:45:05 Heat of formation + Delta-G solvation = -30.073154 kcal Electronic energy + Delta-G solvation = -24274.098447 eV Core-core repulsion = 20539.645792 eV Total energy + Delta-G solvation = -3734.452655 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.137 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.91910 -41.01026 -39.57092 -37.90886 -37.30084 -35.57169 -33.71464 -33.24370 -32.36028 -31.46332 -29.95026 -27.69328 -25.42312 -25.25045 -24.37738 -23.16991 -22.02604 -20.20043 -20.11268 -19.74013 -18.84830 -18.08897 -17.56755 -17.14930 -16.61496 -16.47389 -16.30362 -15.76612 -15.39857 -15.30860 -15.08451 -14.96953 -14.60211 -14.25562 -14.23375 -14.07323 -13.98476 -13.83448 -13.59643 -13.25477 -13.18140 -13.11522 -12.80475 -12.79702 -12.46445 -12.00176 -11.92623 -11.71802 -11.57248 -11.29328 -11.02204 -10.79835 -10.72871 -10.55235 -9.72778 -9.58324 -8.16416 -6.30540 -0.37391 0.18243 1.43778 1.46702 1.53309 1.57770 1.61314 1.65327 1.91750 2.20350 2.45050 2.81087 2.82561 3.16642 3.16756 3.33951 3.49420 3.75644 3.93538 3.95382 4.02226 4.12782 4.24729 4.32586 4.47243 4.50733 4.57926 4.62723 4.73304 4.76967 4.83673 4.92803 5.00493 5.05348 5.09173 5.32022 5.33606 5.51679 5.63332 5.86165 6.10904 6.18270 6.42051 6.42817 6.70148 6.87760 7.20024 7.39781 8.96304 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.044294 B = 0.001914 C = 0.001866 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 631.991883 B =14622.061214 C =15001.026228 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.465 5.465 2 C 0.291 3.709 3 C -0.128 4.128 4 C 0.022 3.978 5 C -0.189 4.189 6 C 0.338 3.662 7 O -0.297 6.297 8 C 0.093 3.907 9 H 0.119 0.881 10 C -0.136 4.136 11 C 0.094 3.906 12 N -0.621 5.621 13 C 0.526 3.474 14 O -0.589 6.589 15 C -0.110 4.110 16 C 0.040 3.960 17 C -0.542 4.542 18 H 0.078 0.922 19 C -0.007 4.007 20 N -0.938 5.938 21 Si 0.975 3.025 22 H -0.272 1.272 23 H -0.287 1.287 24 H -0.254 1.254 25 C 0.105 3.895 26 N -0.550 5.550 27 C 0.204 3.796 28 H 0.179 0.821 29 H 0.169 0.831 30 H 0.083 0.917 31 H 0.116 0.884 32 H 0.096 0.904 33 H 0.095 0.905 34 H 0.104 0.896 35 H 0.105 0.895 36 H -0.018 1.018 37 H -0.018 1.018 38 H 0.262 0.738 39 H 0.071 0.929 40 H 0.064 0.936 41 H 0.192 0.808 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.374 0.125 -8.773 30.657 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.141 5.141 2 C -0.025 4.025 3 C -0.134 4.134 4 C -0.005 4.005 5 C -0.209 4.209 6 C 0.160 3.840 7 O -0.203 6.203 8 C 0.036 3.964 9 H 0.136 0.864 10 C -0.174 4.174 11 C -0.027 4.027 12 N -0.357 5.357 13 C 0.317 3.683 14 O -0.469 6.469 15 C -0.149 4.149 16 C 0.003 3.997 17 C -0.580 4.580 18 H 0.096 0.904 19 C -0.205 4.205 20 N -0.578 5.578 21 Si 0.798 3.202 22 H -0.197 1.197 23 H -0.213 1.213 24 H -0.178 1.178 25 C -0.018 4.018 26 N -0.273 5.273 27 C 0.044 3.956 28 H 0.196 0.804 29 H 0.186 0.814 30 H 0.102 0.898 31 H 0.134 0.866 32 H 0.114 0.886 33 H 0.113 0.887 34 H 0.123 0.877 35 H 0.124 0.876 36 H 0.001 0.999 37 H 0.000 1.000 38 H 0.071 0.929 39 H 0.090 0.910 40 H 0.083 0.917 41 H 0.208 0.792 Dipole moment (debyes) X Y Z Total from point charges -29.892 -0.267 -8.292 31.022 hybrid contribution 1.034 -0.236 -0.234 1.086 sum -28.858 -0.503 -8.527 30.095 Atomic orbital electron populations 1.81346 1.13336 1.10582 1.08833 1.25377 0.92110 0.92282 0.92683 1.16847 0.84709 1.11754 1.00106 1.21726 0.92276 0.90052 0.96449 1.21239 0.94591 1.05814 0.99305 1.20378 0.83834 0.89286 0.90489 1.86264 1.15988 1.76161 1.41893 1.23256 0.91792 0.93446 0.87931 0.86369 1.23229 0.98932 0.94513 1.00719 1.22641 0.91433 0.87385 1.01258 1.48491 1.07645 1.12577 1.66964 1.21154 0.80435 0.90888 0.75831 1.90662 1.68382 1.33028 1.54794 1.21596 0.95798 0.94430 1.03088 1.18717 0.90800 0.95526 0.94682 1.21701 0.94868 0.96557 1.44843 0.90405 1.26145 0.99138 0.99509 0.95674 1.70185 1.10401 1.27298 1.49895 0.85308 0.77185 0.79032 0.78629 1.19727 1.21313 1.17802 1.21761 0.89531 0.90159 1.00322 1.67405 1.09568 1.22555 1.27808 1.22933 0.87400 0.89374 0.95940 0.80407 0.81355 0.89815 0.86561 0.88567 0.88725 0.87750 0.87640 0.99923 0.99956 0.92899 0.91028 0.91747 0.79151 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.46 -8.15 18.54 19.00 0.35 -7.80 16 2 C 0.29 3.28 15.37 88.33 1.36 4.64 16 3 C -0.13 -0.89 5.75 -21.21 -0.12 -1.01 16 4 C 0.02 0.10 9.90 22.71 0.22 0.32 16 5 C -0.19 -1.37 10.02 22.43 0.22 -1.15 16 6 C 0.34 4.14 7.49 84.83 0.64 4.78 16 7 O -0.30 -4.77 9.83 -88.50 -0.87 -5.64 16 8 C 0.09 1.51 3.14 31.78 0.10 1.61 16 9 H 0.12 1.73 7.11 -2.38 -0.02 1.71 16 10 C -0.14 -1.83 6.81 31.99 0.22 -1.61 16 11 C 0.09 1.65 6.69 86.85 0.58 2.23 16 12 N -0.62 -17.41 3.33 -811.79 -2.70 -20.11 16 13 C 0.53 20.84 7.85 87.66 0.69 21.53 16 14 O -0.59 -29.71 16.31 -3.02 -0.05 -29.76 16 15 C -0.11 -4.39 4.65 29.85 0.14 -4.25 16 16 C 0.04 2.25 4.26 29.85 0.13 2.38 16 17 C -0.54 -30.60 9.11 25.60 0.23 -30.37 16 18 H 0.08 3.96 7.74 -2.91 -0.02 3.94 16 19 C -0.01 -0.42 5.46 84.65 0.46 0.04 16 20 N -0.94 -59.46 13.29 21.45 0.28 -59.17 16 21 Si 0.97 43.93 29.54 68.60 2.03 45.95 16 22 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 23 H -0.29 -12.88 7.11 99.48 0.71 -12.17 16 24 H -0.25 -10.57 7.11 99.48 0.71 -9.87 16 25 C 0.11 2.56 6.64 86.73 0.58 3.13 16 26 N -0.55 -6.16 8.67 -307.77 -2.67 -8.83 16 27 C 0.20 1.46 10.92 85.03 0.93 2.39 16 28 H 0.18 -0.16 8.06 -2.91 -0.02 -0.18 16 29 H 0.17 0.72 8.06 -2.91 -0.02 0.70 16 30 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 31 H 0.12 1.07 8.14 -2.39 -0.02 1.05 16 32 H 0.10 1.57 7.48 -2.39 -0.02 1.55 16 33 H 0.09 1.34 8.14 -2.38 -0.02 1.32 16 34 H 0.10 3.65 7.85 -2.39 -0.02 3.63 16 35 H 0.11 3.67 8.14 -2.39 -0.02 3.65 16 36 H -0.02 -1.12 8.10 -2.39 -0.02 -1.14 16 37 H -0.02 -1.14 8.10 -2.39 -0.02 -1.16 16 38 H 0.26 15.57 8.31 -92.71 -0.77 14.80 16 39 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 40 H 0.06 1.75 8.06 -2.39 -0.02 1.73 16 41 H 0.19 0.46 8.06 -2.91 -0.02 0.44 16 Total: -1.00 -82.60 362.50 3.80 -78.80 By element: Atomic # 1 Polarization: 0.85 SS G_CDS: 1.05 Total: 1.90 kcal Atomic # 6 Polarization: -1.71 SS G_CDS: 6.37 Total: 4.67 kcal Atomic # 7 Polarization: -91.18 SS G_CDS: -4.73 Total: -95.91 kcal Atomic # 8 Polarization: -34.49 SS G_CDS: -0.92 Total: -35.41 kcal Atomic # 14 Polarization: 43.93 SS G_CDS: 2.03 Total: 45.95 kcal Total: -82.60 3.80 -78.80 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000341424730.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.730 kcal (2) G-P(sol) polarization free energy of solvation -82.599 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.869 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.796 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.803 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.073 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds