Wall clock time and date at job start Tue Mar 31 2020 11:00:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.29811 * 126.33423 * 2 1 4 4 O 1.41324 * 109.72707 * 180.02562 * 3 2 1 5 5 C 1.34843 * 109.42147 * 0.02562 * 4 3 2 6 6 N 1.32441 * 133.09679 * 180.02562 * 5 4 3 7 7 C 1.31567 * 122.02869 * 179.97438 * 6 5 4 8 8 C 1.50697 * 119.17404 * 179.97438 * 7 6 5 9 9 C 1.52996 * 117.49780 * 163.74703 * 8 7 6 10 10 C 1.52999 * 117.49912 * 95.08472 * 8 7 6 11 11 C 1.38593 * 121.65360 * 0.02562 * 7 6 5 12 12 C 1.39444 * 119.20157 * 359.97428 * 11 7 6 13 13 C 1.48005 * 121.10106 * 179.97438 * 12 11 7 14 14 O 1.21535 * 119.99785 * 172.65329 * 13 12 11 15 15 N 1.34782 * 120.00233 * 352.64756 * 13 12 11 16 16 C 1.46499 * 120.00020 * 179.97438 * 15 13 12 17 17 C 1.52999 * 109.47068 * 180.02562 * 16 15 13 18 18 C 1.50697 * 109.46911 * 180.02562 * 17 16 15 19 19 H 1.07995 * 120.00450 * 0.02562 * 18 17 16 20 20 C 1.37885 * 119.99724 * 179.97438 * 18 17 16 21 21 N 1.31521 * 119.99908 * 179.97438 * 20 18 17 22 22 Si 1.86801 * 119.99959 * 0.02562 * 20 18 17 23 23 H 1.48497 * 109.47105 * 89.99984 * 22 20 18 24 24 H 1.48505 * 109.46968 * 209.99897 * 22 20 18 25 25 H 1.48496 * 109.47161 * 329.99760 * 22 20 18 26 26 C 1.40528 * 106.85713 * 359.96689 * 5 4 3 27 27 H 1.08998 * 109.47099 * 260.34879 * 1 2 3 28 28 H 1.09001 * 109.47198 * 20.34922 * 1 2 3 29 29 H 1.08997 * 109.47502 * 140.34841 * 1 2 3 30 30 H 1.09000 * 115.54904 * 309.41864 * 8 7 6 31 31 H 1.09000 * 117.50013 * 359.97438 * 9 8 7 32 32 H 1.09001 * 117.49990 * 145.02240 * 9 8 7 33 33 H 1.08994 * 117.50262 * 214.97875 * 10 8 7 34 34 H 1.09004 * 117.49735 * 359.97438 * 10 8 7 35 35 H 1.07996 * 120.40089 * 180.02562 * 11 7 6 36 36 H 0.96999 * 119.99689 * 0.02562 * 15 13 12 37 37 H 1.08994 * 109.47236 * 300.00881 * 16 15 13 38 38 H 1.09004 * 109.46939 * 60.00251 * 16 15 13 39 39 H 1.09004 * 109.47030 * 300.00104 * 17 16 15 40 40 H 1.08999 * 109.46891 * 59.99958 * 17 16 15 41 41 H 0.96989 * 119.99687 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2761 1.0457 0.0000 4 8 3.6304 0.6418 -0.0006 5 6 3.6966 -0.7050 -0.0015 6 7 4.7070 -1.5613 -0.0019 7 6 4.5181 -2.8633 -0.0024 8 6 5.7148 -3.7792 -0.0034 9 6 5.4841 -5.2434 0.3759 10 6 6.2034 -4.3047 1.3479 11 6 3.2462 -3.4138 -0.0031 12 6 2.1384 -2.5668 -0.0027 13 6 0.7613 -3.1093 -0.0039 14 8 -0.1867 -2.3609 0.1311 15 7 0.5586 -4.4332 -0.1548 16 6 -0.8044 -4.9701 -0.1554 17 6 -0.7545 -6.4880 -0.3411 18 6 -2.1567 -7.0402 -0.3424 19 1 -2.9991 -6.3751 -0.2231 20 6 -2.3640 -8.3946 -0.4969 21 7 -3.5877 -8.8766 -0.4975 22 14 -0.9069 -9.5450 -0.7038 23 1 -0.4563 -10.0180 0.6297 24 1 -1.3096 -10.7098 -1.5322 25 1 0.2036 -8.8216 -1.3736 26 6 2.3734 -1.1780 -0.0008 27 1 -0.3633 -0.1723 1.0131 28 1 -0.3634 0.9635 -0.3574 29 1 -0.3634 -0.7912 -0.6557 30 1 6.4673 -3.5687 -0.7635 31 1 4.4669 -5.5441 0.6266 32 1 6.0851 -5.9961 -0.1343 33 1 7.2772 -4.4403 1.4768 34 1 5.6595 -3.9876 2.2377 35 1 3.1145 -4.4857 -0.0030 36 1 1.3153 -5.0305 -0.2622 37 1 -1.2876 -4.7361 0.7932 38 1 -1.3710 -4.5223 -0.9719 39 1 -0.2712 -6.7223 -1.2896 40 1 -0.1881 -6.9355 0.4756 41 1 -3.7335 -9.8294 -0.6058 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000342642764.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:00:16 Heat of formation + Delta-G solvation = 54.868085 kcal Electronic energy + Delta-G solvation = -25481.006588 eV Core-core repulsion = 21750.237262 eV Total energy + Delta-G solvation = -3730.769326 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.137 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -43.38287 -41.11958 -40.29182 -37.58377 -36.86599 -35.87422 -34.93111 -33.80822 -31.88611 -31.38032 -29.77631 -27.50451 -25.96567 -25.56117 -23.41508 -23.07437 -22.58663 -21.80189 -21.04364 -19.16775 -19.11495 -18.93269 -18.54803 -17.77882 -17.04838 -16.64629 -16.40148 -16.20503 -15.97497 -15.80532 -15.12571 -15.00520 -14.76138 -14.62663 -14.54563 -14.23711 -13.98635 -13.54898 -13.28819 -13.12287 -13.00158 -12.65167 -12.32631 -12.26939 -12.16065 -12.07352 -11.72521 -11.65184 -11.50120 -11.40723 -11.32870 -10.74513 -10.73506 -10.65405 -10.13433 -10.10673 -8.25513 -6.32807 -1.13990 -0.47146 0.59957 0.78382 1.43835 1.46602 1.52639 1.57137 1.82725 2.29331 2.41269 2.41312 2.81349 2.91505 3.03873 3.10483 3.15047 3.38234 3.67045 3.85763 3.96748 4.00848 4.21768 4.23297 4.32311 4.37612 4.48102 4.50753 4.61327 4.67254 4.79804 4.83446 4.92578 5.02551 5.08962 5.17407 5.28056 5.29761 5.44862 5.46643 5.66594 5.78152 6.24723 6.32889 6.40058 6.75943 7.03450 7.32116 8.91068 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.012817 B = 0.003718 C = 0.002918 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2184.006672 B = 7529.976504 C = 9592.924087 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C 0.165 3.835 3 N -0.300 5.300 4 O -0.105 6.105 5 C 0.279 3.721 6 N -0.481 5.481 7 C 0.238 3.762 8 C -0.133 4.133 9 C -0.152 4.152 10 C -0.157 4.157 11 C -0.157 4.157 12 C 0.002 3.998 13 C 0.546 3.454 14 O -0.539 6.539 15 N -0.696 5.696 16 C 0.145 3.855 17 C -0.016 4.016 18 C -0.537 4.537 19 H 0.031 0.969 20 C 0.003 3.997 21 N -0.953 5.953 22 Si 0.955 3.045 23 H -0.265 1.265 24 H -0.293 1.293 25 H -0.230 1.230 26 C -0.225 4.225 27 H 0.100 0.900 28 H 0.089 0.911 29 H 0.116 0.884 30 H 0.140 0.860 31 H 0.111 0.889 32 H 0.128 0.872 33 H 0.120 0.880 34 H 0.090 0.910 35 H 0.190 0.810 36 H 0.414 0.586 37 H 0.055 0.945 38 H 0.055 0.945 39 H 0.039 0.961 40 H 0.039 0.961 41 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.210 8.124 1.237 22.746 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.015 4.015 3 N -0.051 5.051 4 O -0.107 6.107 5 C 0.097 3.903 6 N -0.202 5.202 7 C 0.095 3.905 8 C -0.152 4.152 9 C -0.189 4.189 10 C -0.194 4.194 11 C -0.178 4.178 12 C -0.010 4.010 13 C 0.333 3.667 14 O -0.418 6.418 15 N -0.348 5.348 16 C 0.022 3.978 17 C -0.054 4.054 18 C -0.575 4.575 19 H 0.049 0.951 20 C -0.194 4.194 21 N -0.593 5.593 22 Si 0.778 3.222 23 H -0.190 1.190 24 H -0.219 1.219 25 H -0.152 1.152 26 C -0.232 4.232 27 H 0.118 0.882 28 H 0.107 0.893 29 H 0.134 0.866 30 H 0.158 0.842 31 H 0.129 0.871 32 H 0.146 0.854 33 H 0.139 0.861 34 H 0.109 0.891 35 H 0.207 0.793 36 H 0.252 0.748 37 H 0.074 0.926 38 H 0.073 0.927 39 H 0.058 0.942 40 H 0.058 0.942 41 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 21.389 10.273 1.312 23.765 hybrid contribution -0.705 -1.459 -0.106 1.624 sum 20.684 8.814 1.206 22.516 Atomic orbital electron populations 1.20978 0.81651 1.04903 1.06159 1.25019 0.99629 0.88276 0.88533 1.80093 0.83677 1.17739 1.23544 1.89194 1.24337 1.15520 1.81609 1.20456 0.89602 0.86454 0.93819 1.66243 1.33023 1.03247 1.17691 1.20933 0.94590 0.86979 0.87994 1.20985 0.96596 0.94422 1.03166 1.23395 1.03582 0.90348 1.01593 1.23141 1.02579 1.01957 0.91743 1.22518 0.90549 1.02941 1.01766 1.19970 0.94614 0.90823 0.95636 1.18223 0.87917 0.82858 0.77721 1.90748 1.44009 1.57112 1.49968 1.45971 1.10669 1.06762 1.71354 1.21188 0.81047 0.94601 1.01012 1.19688 0.95914 0.91454 0.98335 1.21255 0.92759 0.93185 1.50306 0.95106 1.26087 0.99029 1.00337 0.93969 1.70081 1.23212 1.14240 1.51761 0.85595 0.79766 0.77774 0.79103 1.19000 1.21933 1.15230 1.21409 0.93207 0.95143 1.13399 0.88192 0.89263 0.86586 0.84200 0.87067 0.85359 0.86150 0.89142 0.79300 0.74846 0.92612 0.92664 0.94240 0.94236 0.92492 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.87 8.53 71.24 0.61 -1.27 16 2 C 0.17 4.54 7.44 44.94 0.33 4.88 16 3 N -0.30 -8.97 12.81 -43.68 -0.56 -9.53 16 4 O -0.11 -3.31 12.06 29.71 0.36 -2.95 16 5 C 0.28 8.02 8.64 85.16 0.74 8.76 16 6 N -0.48 -12.16 10.25 -296.37 -3.04 -15.20 16 7 C 0.24 4.42 6.46 42.68 0.28 4.70 16 8 C -0.13 -1.55 6.20 -11.54 -0.07 -1.63 16 9 C -0.15 -1.04 9.78 30.62 0.30 -0.74 16 10 C -0.16 -1.44 10.24 30.62 0.31 -1.13 16 11 C -0.16 -2.69 8.83 22.65 0.20 -2.49 16 12 C 0.00 0.05 5.93 -19.76 -0.12 -0.06 16 13 C 0.55 14.44 7.78 86.83 0.68 15.11 16 14 O -0.54 -16.75 11.40 -3.82 -0.04 -16.80 16 15 N -0.70 -17.28 5.51 -465.82 -2.57 -19.84 16 16 C 0.14 4.88 5.61 86.38 0.48 5.36 16 17 C -0.02 -0.62 4.15 29.85 0.12 -0.50 16 18 C -0.54 -28.19 9.66 25.60 0.25 -27.95 16 19 H 0.03 1.83 7.99 -2.91 -0.02 1.81 16 20 C 0.00 0.15 5.47 84.66 0.46 0.61 16 21 N -0.95 -56.98 13.96 21.45 0.30 -56.68 16 22 Si 0.96 39.02 27.47 68.60 1.88 40.90 16 23 H -0.27 -10.33 7.11 99.48 0.71 -9.63 16 24 H -0.29 -12.24 7.11 99.48 0.71 -11.53 16 25 H -0.23 -7.98 6.54 99.48 0.65 -7.33 16 26 C -0.22 -6.15 6.15 -20.00 -0.12 -6.27 16 27 H 0.10 2.31 7.89 -2.39 -0.02 2.29 16 28 H 0.09 1.73 8.14 -2.39 -0.02 1.71 16 29 H 0.12 3.02 5.45 -9.62 -0.05 2.97 16 30 H 0.14 1.44 8.14 -2.39 -0.02 1.42 16 31 H 0.11 0.61 6.35 -2.39 -0.02 0.59 16 32 H 0.13 0.46 8.14 -2.39 -0.02 0.44 16 33 H 0.12 0.77 8.14 -2.39 -0.02 0.75 16 34 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 35 H 0.19 1.84 4.75 -2.91 -0.01 1.82 16 36 H 0.41 7.33 6.68 -92.71 -0.62 6.71 16 37 H 0.06 2.04 8.14 -2.39 -0.02 2.02 16 38 H 0.05 2.02 8.14 -2.39 -0.02 2.00 16 39 H 0.04 1.42 7.20 -2.39 -0.02 1.40 16 40 H 0.04 1.39 7.57 -2.39 -0.02 1.37 16 41 H 0.27 14.86 8.31 -92.72 -0.77 14.09 16 Total: -1.00 -69.99 344.28 1.16 -68.82 By element: Atomic # 1 Polarization: 13.50 SS G_CDS: 0.38 Total: 13.88 kcal Atomic # 6 Polarization: -7.06 SS G_CDS: 4.45 Total: -2.61 kcal Atomic # 7 Polarization: -95.39 SS G_CDS: -5.87 Total: -101.25 kcal Atomic # 8 Polarization: -20.06 SS G_CDS: 0.31 Total: -19.75 kcal Atomic # 14 Polarization: 39.02 SS G_CDS: 1.88 Total: 40.90 kcal Total: -69.99 1.16 -68.82 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000342642764.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.692 kcal (2) G-P(sol) polarization free energy of solvation -69.986 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.706 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.162 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.824 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.868 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds