Wall clock time and date at job start Tue Mar 31 2020 11:04:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38943 * 119.69457 * 2 1 4 4 C 1.37669 * 120.64790 * 179.97438 * 3 2 1 5 5 C 1.39228 * 119.81141 * 359.97438 * 4 3 2 6 6 N 1.37478 * 133.17539 * 180.02562 * 5 4 3 7 7 H 0.96999 * 125.60831 * 359.97438 * 6 5 4 8 8 C 1.38153 * 108.78248 * 179.32699 * 6 5 4 9 9 C 1.47062 * 125.42864 * 180.09279 * 8 6 5 10 10 O 1.21647 * 119.99976 * 180.57962 * 9 8 6 11 11 N 1.34771 * 119.99917 * 0.58049 * 9 8 6 12 12 C 1.46501 * 119.99858 * 180.02562 * 11 9 8 13 13 C 1.50710 * 109.47130 * 179.97438 * 12 11 9 14 14 O 1.21292 * 119.99703 * 0.02562 * 13 12 11 15 15 N 1.34774 * 119.99960 * 179.97438 * 13 12 11 16 16 C 1.37096 * 119.99781 * 180.02562 * 15 13 12 17 17 H 1.07998 * 120.00022 * 0.02562 * 16 15 13 18 18 C 1.38958 * 119.99936 * 179.97438 * 16 15 13 19 19 N 1.31412 * 119.99599 * 0.02562 * 18 16 15 20 20 Si 1.86796 * 119.99809 * 179.97438 * 18 16 15 21 21 H 1.48506 * 109.46957 * 90.00529 * 20 18 16 22 22 H 1.48508 * 109.46780 * 210.00072 * 20 18 16 23 23 H 1.48494 * 109.47507 * 330.00343 * 20 18 16 24 24 C 1.35866 * 109.13700 * 0.59208 * 8 6 5 25 25 C 1.40851 * 119.42983 * 359.75178 * 5 4 3 26 26 C 1.36442 * 119.69261 * 179.97438 * 2 1 3 27 27 C 1.50706 * 120.08300 * 359.97438 * 26 2 1 28 28 H 1.09001 * 109.47062 * 270.02179 * 1 2 3 29 29 H 1.08998 * 109.47342 * 30.02209 * 1 2 3 30 30 H 1.09001 * 109.47098 * 150.02013 * 1 2 3 31 31 H 1.07994 * 119.67029 * 0.02562 * 3 2 1 32 32 H 1.08000 * 120.09287 * 179.97438 * 4 3 2 33 33 H 0.97003 * 120.00305 * 0.02562 * 11 9 8 34 34 H 1.08999 * 109.47182 * 299.99958 * 12 11 9 35 35 H 1.08995 * 109.47103 * 60.00343 * 12 11 9 36 36 H 0.97000 * 120.00211 * 0.02562 * 15 13 12 37 37 H 0.96998 * 119.99671 * 180.02562 * 19 18 16 38 38 H 1.08008 * 126.13523 * 179.51830 * 24 8 6 39 39 H 1.09001 * 109.46953 * 90.00172 * 27 26 2 40 40 H 1.09000 * 109.47318 * 209.99770 * 27 26 2 41 41 H 1.09000 * 109.47161 * 330.00400 * 27 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1952 1.2070 0.0000 4 6 3.5717 1.2299 0.0005 5 6 4.2839 0.0335 0.0016 6 7 5.6266 -0.2619 0.0028 7 1 6.3476 0.3869 0.0027 8 6 5.7799 -1.6348 0.0189 9 6 7.0654 -2.3490 0.0271 10 8 7.0855 -3.5653 0.0307 11 7 8.2213 -1.6560 0.0306 12 6 9.5019 -2.3675 0.0382 13 6 10.6311 -1.3694 0.0402 14 8 10.3898 -0.1807 0.0362 15 7 11.9090 -1.7976 0.0476 16 6 12.9362 -0.8896 0.0499 17 1 12.7214 0.1688 0.0464 18 6 14.2537 -1.3311 0.0580 19 7 14.5151 -2.6190 0.0628 20 14 15.6533 -0.0940 0.0605 21 1 16.0173 0.2387 1.4613 22 1 16.8306 -0.6771 -0.6317 23 1 15.2246 1.1398 -0.6459 24 6 4.5537 -2.2200 0.0147 25 6 3.5838 -1.1887 0.0075 26 6 2.1828 -1.1853 0.0005 27 6 1.4242 -2.4875 0.0017 28 1 -0.3633 0.0004 1.0277 29 1 -0.3634 0.8898 -0.5142 30 1 -0.3633 -0.8902 -0.5135 31 1 1.6449 2.1362 0.0004 32 1 4.0976 2.1732 0.0001 33 1 8.2053 -0.6861 0.0281 34 1 9.5659 -2.9909 0.9301 35 1 9.5741 -2.9952 -0.8499 36 1 12.1020 -2.7482 0.0511 37 1 15.4348 -2.9272 0.0688 38 1 4.3546 -3.2816 0.0171 39 1 1.2409 -2.8021 -1.0257 40 1 2.0105 -3.2491 0.5158 41 1 0.4725 -2.3530 0.5157 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000343535210.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:04:12 Heat of formation + Delta-G solvation = -29.119581 kcal Electronic energy + Delta-G solvation = -24492.419694 eV Core-core repulsion = 20758.008389 eV Total energy + Delta-G solvation = -3734.411305 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.137 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.75445 -39.54267 -38.26332 -37.58205 -34.63402 -33.84003 -33.43888 -31.69257 -31.43844 -30.03326 -28.50632 -27.04134 -25.99958 -24.76193 -23.19613 -21.22717 -20.85677 -20.08961 -19.67789 -18.51996 -17.99365 -16.99428 -15.83913 -15.75149 -15.60933 -15.37569 -15.12135 -14.85282 -14.60627 -14.18881 -14.08697 -13.87042 -13.51858 -13.48991 -13.41648 -13.00927 -12.93238 -12.65720 -12.31511 -12.18895 -12.06512 -11.69818 -11.54808 -11.18732 -11.14902 -10.98133 -10.51333 -10.39178 -10.16259 -9.87182 -9.70971 -9.04030 -8.74029 -8.26779 -8.17866 -7.80701 -6.58239 -4.00613 0.63343 1.41547 2.02488 2.79050 3.06567 3.12005 3.18566 3.24441 3.33970 3.64067 3.65679 4.05012 4.44523 4.66711 4.70917 4.75797 4.89175 4.96569 5.07460 5.10124 5.12139 5.34022 5.38811 5.45844 5.51261 5.54626 5.63940 5.70815 5.79651 5.84580 5.89963 5.95609 5.97814 6.22471 6.37094 6.47656 6.51124 6.56574 6.92449 7.23025 7.39502 7.58862 7.83822 8.17067 8.36782 8.97111 9.30856 9.78088 10.58380 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.033192 B = 0.002201 C = 0.002068 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 843.365195 B =12719.603976 C =13537.203269 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.123 4.123 3 C -0.084 4.084 4 C -0.134 4.134 5 C 0.112 3.888 6 N -0.575 5.575 7 H 0.421 0.579 8 C 0.025 3.975 9 C 0.579 3.421 10 O -0.529 6.529 11 N -0.703 5.703 12 C 0.109 3.891 13 C 0.426 3.574 14 O -0.600 6.600 15 N -0.545 5.545 16 C -0.307 4.307 17 H 0.106 0.894 18 C 0.026 3.974 19 N -0.892 5.892 20 Si 0.934 3.066 21 H -0.276 1.276 22 H -0.282 1.282 23 H -0.269 1.269 24 C -0.110 4.110 25 C -0.114 4.114 26 C -0.029 4.029 27 C -0.118 4.118 28 H 0.065 0.935 29 H 0.062 0.938 30 H 0.066 0.934 31 H 0.125 0.875 32 H 0.123 0.877 33 H 0.406 0.594 34 H 0.088 0.912 35 H 0.088 0.912 36 H 0.397 0.603 37 H 0.275 0.725 38 H 0.155 0.845 39 H 0.072 0.928 40 H 0.069 0.931 41 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.240 2.974 -0.125 24.422 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.124 4.124 3 C -0.104 4.104 4 C -0.154 4.154 5 C 0.001 3.999 6 N -0.180 5.180 7 H 0.260 0.740 8 C -0.085 4.085 9 C 0.365 3.635 10 O -0.406 6.406 11 N -0.357 5.357 12 C -0.019 4.019 13 C 0.211 3.789 14 O -0.488 6.488 15 N -0.180 5.180 16 C -0.436 4.436 17 H 0.124 0.876 18 C -0.177 4.177 19 N -0.532 5.532 20 Si 0.761 3.239 21 H -0.202 1.202 22 H -0.207 1.207 23 H -0.193 1.193 24 C -0.137 4.137 25 C -0.119 4.119 26 C -0.030 4.030 27 C -0.174 4.174 28 H 0.084 0.916 29 H 0.081 0.919 30 H 0.085 0.915 31 H 0.143 0.857 32 H 0.141 0.859 33 H 0.244 0.756 34 H 0.106 0.894 35 H 0.106 0.894 36 H 0.231 0.769 37 H 0.085 0.915 38 H 0.173 0.827 39 H 0.091 0.909 40 H 0.088 0.912 41 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -23.950 2.815 -0.137 24.115 hybrid contribution 1.482 0.855 0.016 1.711 sum -22.468 3.670 -0.121 22.766 Atomic orbital electron populations 1.20742 0.91278 1.02539 1.01986 1.19200 0.95910 0.92300 1.05018 1.20707 0.92805 0.97495 0.99389 1.20050 0.93815 0.94936 1.06611 1.18306 0.82928 0.95519 1.03098 1.42036 1.06292 1.06212 1.63446 0.74007 1.20179 0.95111 0.82230 1.10930 1.17164 0.82085 0.86863 0.77373 1.90838 1.86811 1.12342 1.50560 1.45597 1.04943 1.11270 1.73850 1.21024 0.82413 0.94720 1.03700 1.19682 0.84107 0.89115 0.85980 1.90485 1.83577 1.16936 1.57761 1.41788 1.03895 1.10102 1.62181 1.19731 0.84215 0.91198 1.48480 0.87643 1.25351 0.98863 0.96848 0.96625 1.69612 1.21492 1.13197 1.48901 0.85795 0.79645 0.79943 0.78545 1.20207 1.20724 1.19307 1.20819 0.89071 0.99262 1.04559 1.17991 0.92904 0.92320 1.08635 1.18981 0.90909 0.95160 0.97909 1.20827 0.99780 0.94353 1.02443 0.91580 0.91869 0.91520 0.85665 0.85914 0.75603 0.89370 0.89381 0.76949 0.91483 0.82740 0.90948 0.91248 0.91242 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.70 9.15 36.00 0.33 -0.37 16 2 C -0.12 -1.14 5.84 -105.01 -0.61 -1.76 16 3 C -0.08 -0.76 9.66 -39.53 -0.38 -1.15 16 4 C -0.13 -1.35 10.08 -39.42 -0.40 -1.75 16 5 C 0.11 1.35 7.25 -83.98 -0.61 0.74 16 6 N -0.58 -6.94 6.07 -7.35 -0.04 -6.99 16 7 H 0.42 4.34 8.12 -40.82 -0.33 4.01 16 8 C 0.03 0.35 6.97 -82.29 -0.57 -0.22 16 9 C 0.58 9.36 7.80 -12.68 -0.10 9.26 16 10 O -0.53 -9.85 16.84 5.24 0.09 -9.77 16 11 N -0.70 -11.49 5.52 -62.68 -0.35 -11.84 16 12 C 0.11 1.95 6.15 -5.19 -0.03 1.91 16 13 C 0.43 9.51 7.85 -10.98 -0.09 9.42 16 14 O -0.60 -14.92 15.24 5.55 0.08 -14.83 16 15 N -0.55 -13.24 5.29 -10.96 -0.06 -13.30 16 16 C -0.31 -8.20 9.68 -14.93 -0.14 -8.34 16 17 H 0.11 2.93 7.16 -52.49 -0.38 2.56 16 18 C 0.03 0.68 5.50 -17.46 -0.10 0.58 16 19 N -0.89 -23.46 13.05 55.50 0.72 -22.73 16 20 Si 0.93 20.24 29.55 -169.99 -5.02 15.22 16 21 H -0.28 -5.92 7.11 56.52 0.40 -5.52 16 22 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 23 H -0.27 -5.80 7.11 56.52 0.40 -5.40 16 24 C -0.11 -1.46 10.11 -39.16 -0.40 -1.85 16 25 C -0.11 -1.41 5.98 -106.93 -0.64 -2.05 16 26 C -0.03 -0.30 5.88 -104.57 -0.62 -0.92 16 27 C -0.12 -0.93 9.08 36.01 0.33 -0.61 16 28 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.06 0.34 8.08 -51.93 -0.42 -0.08 16 30 H 0.07 0.38 6.64 -51.93 -0.34 0.04 16 31 H 0.13 0.82 8.06 -52.49 -0.42 0.40 16 32 H 0.12 1.00 8.06 -52.49 -0.42 0.57 16 33 H 0.41 6.39 6.49 -40.82 -0.26 6.12 16 34 H 0.09 1.50 8.14 -51.93 -0.42 1.08 16 35 H 0.09 1.50 8.14 -51.93 -0.42 1.08 16 36 H 0.40 9.24 7.90 -40.82 -0.32 8.92 16 37 H 0.28 6.83 8.31 -40.82 -0.34 6.49 16 38 H 0.15 1.87 8.05 -52.48 -0.42 1.45 16 39 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 40 H 0.07 0.55 7.83 -51.93 -0.41 0.15 16 41 H 0.07 0.44 6.65 -51.93 -0.35 0.10 16 LS Contribution 353.77 15.07 5.33 5.33 Total: -1.00 -31.39 353.77 -8.18 -39.56 By element: Atomic # 1 Polarization: 21.33 SS G_CDS: -4.90 Total: 16.43 kcal Atomic # 6 Polarization: 6.95 SS G_CDS: -4.03 Total: 2.92 kcal Atomic # 7 Polarization: -55.13 SS G_CDS: 0.28 Total: -54.86 kcal Atomic # 8 Polarization: -24.77 SS G_CDS: 0.17 Total: -24.60 kcal Atomic # 14 Polarization: 20.24 SS G_CDS: -5.02 Total: 15.22 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -31.39 -8.18 -39.56 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343535210.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.443 kcal (2) G-P(sol) polarization free energy of solvation -31.387 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.944 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.175 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.562 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.120 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds