Wall clock time and date at job start Tue Mar 31 2020 10:34:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30821 * 1 3 3 Si 1.86800 * 120.00254 * 2 1 4 4 H 1.48502 * 109.46794 * 269.99475 * 3 2 1 5 5 H 1.48499 * 109.47177 * 29.99141 * 3 2 1 6 6 H 1.48492 * 109.47228 * 149.99802 * 3 2 1 7 7 C 1.39950 * 119.99991 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00182 * 197.72226 * 7 2 1 9 9 C 1.41399 * 119.99773 * 17.71280 * 7 2 1 10 10 C 1.40715 * 120.24183 * 24.53568 * 9 7 2 11 11 C 1.37622 * 119.74171 * 180.22515 * 10 9 7 12 12 C 1.38639 * 120.24860 * 359.52374 * 11 10 9 13 13 C 1.50696 * 119.74657 * 180.22798 * 12 11 10 14 14 N 1.46906 * 109.46787 * 90.00290 * 13 12 11 15 15 C 1.46898 * 110.99586 * 179.97438 * 14 13 12 16 16 H 1.08996 * 109.47605 * 35.00071 * 15 14 13 17 17 C 1.53000 * 109.47560 * 274.99819 * 15 14 13 18 18 O 1.42905 * 109.46818 * 295.00458 * 17 15 14 19 19 C 1.50707 * 109.46841 * 154.99979 * 15 14 13 20 20 C 1.38265 * 119.98956 * 39.72675 * 19 15 14 21 21 C 1.38225 * 120.05074 * 179.72703 * 20 19 15 22 22 C 1.38217 * 120.02519 * 0.54342 * 21 20 19 23 23 C 1.38438 * 119.97369 * 359.73233 * 22 21 20 24 24 F 1.35105 * 120.02394 * 180.02562 * 23 22 21 25 25 C 1.38178 * 119.98359 * 219.99718 * 19 15 14 26 26 C 1.38625 * 120.49818 * 0.25095 * 12 11 10 27 27 C 1.37615 * 120.25450 * 359.97438 * 26 12 11 28 28 H 0.97005 * 119.99803 * 0.02562 * 1 2 3 29 29 H 1.08002 * 120.13049 * 0.02784 * 10 9 7 30 30 H 1.08000 * 119.87511 * 179.79707 * 11 10 9 31 31 H 1.08997 * 109.47081 * 209.99575 * 13 12 11 32 32 H 1.08996 * 109.47487 * 330.00038 * 13 12 11 33 33 H 1.00895 * 111.00240 * 303.94778 * 14 13 12 34 34 H 1.08997 * 109.47100 * 55.00046 * 17 15 14 35 35 H 1.08999 * 109.47768 * 175.00310 * 17 15 14 36 36 H 0.96698 * 113.99797 * 179.97438 * 18 17 15 37 37 H 1.07999 * 119.96982 * 359.97438 * 20 19 15 38 38 H 1.07999 * 119.98245 * 180.27431 * 21 20 19 39 39 H 1.07995 * 120.01158 * 179.70540 * 22 21 20 40 40 H 1.08001 * 120.01487 * 0.02562 * 25 19 15 41 41 H 1.08002 * 119.87351 * 179.97438 * 26 12 11 42 42 H 1.08000 * 120.13220 * 180.02562 * 27 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 2.4899 2.0462 -1.4001 5 1 1.4397 2.6527 0.6998 6 1 3.5397 1.4401 0.7000 7 6 2.0080 -1.2120 0.0005 8 1 3.0495 -1.2341 0.2852 9 6 1.3512 -2.4077 -0.3715 10 6 0.2200 -2.3644 -1.2074 11 6 -0.4140 -3.5340 -1.5593 12 6 0.0636 -4.7524 -1.1015 13 6 -0.6364 -6.0266 -1.4980 14 7 -0.0495 -6.5407 -2.7428 15 6 -0.7082 -7.7855 -3.1604 16 1 -1.7667 -7.7402 -2.9044 17 6 -0.0603 -8.9712 -2.4425 18 8 1.2978 -9.1010 -2.8676 19 6 -0.5586 -7.9576 -4.6501 20 6 0.6340 -7.6287 -5.2675 21 6 0.7745 -7.7913 -6.6330 22 6 -0.2811 -8.2725 -7.3844 23 6 -1.4776 -8.5969 -6.7681 24 9 -2.5099 -9.0679 -7.5015 25 6 -1.6153 -8.4389 -5.3992 26 6 1.1799 -4.8072 -0.2814 27 6 1.8271 -3.6500 0.0870 28 1 -0.4850 0.8401 -0.0004 29 1 -0.1511 -1.4167 -1.5687 30 1 -1.2843 -3.5030 -2.1980 31 1 -0.5178 -6.7675 -0.7074 32 1 -1.6966 -5.8260 -1.6519 33 1 -0.0891 -5.8473 -3.4746 34 1 -0.0896 -8.8041 -1.3658 35 1 -0.6053 -9.8839 -2.6834 36 1 1.7717 -9.8342 -2.4517 37 1 1.4577 -7.2481 -4.6818 38 1 1.7080 -7.5382 -7.1134 39 1 -0.1727 -8.3951 -8.4518 40 1 -2.5484 -8.6913 -4.9174 41 1 1.5431 -5.7618 0.0697 42 1 2.6969 -3.6950 0.7256 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000343691666.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:34:08 Heat of formation + Delta-G solvation = -53.637642 kcal Electronic energy + Delta-G solvation = -24854.700820 eV Core-core repulsion = 21099.306371 eV Total energy + Delta-G solvation = -3755.394449 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.138 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -48.97750 -39.62550 -37.79554 -36.96540 -35.22996 -33.68850 -31.86915 -30.61953 -29.70949 -29.21991 -27.98641 -26.03654 -23.85324 -22.89953 -22.55070 -20.97915 -20.43284 -19.85457 -17.62962 -17.36744 -17.27633 -16.23262 -16.16301 -15.76185 -15.69061 -15.22299 -14.72380 -14.49913 -14.12650 -13.81130 -13.79833 -13.55810 -13.23001 -12.93145 -12.89406 -12.47044 -12.29675 -11.94475 -11.81089 -11.69972 -11.46343 -11.39892 -11.06592 -10.97813 -10.79608 -10.50867 -10.37626 -9.92688 -9.57167 -9.38048 -9.13347 -9.06796 -8.68638 -8.11132 -7.43960 -7.29056 -6.76384 -4.34691 1.08739 1.14961 2.73790 3.06591 3.10294 3.10596 3.18087 3.52902 3.93006 4.03846 4.29681 4.40370 4.56130 4.67077 4.78073 4.95337 5.17467 5.26325 5.31746 5.39693 5.48458 5.58304 5.71916 5.76108 5.82249 5.88418 5.99608 6.06378 6.27443 6.33354 6.38075 6.42662 6.49735 6.85070 6.95453 7.08073 7.28089 7.32759 7.39111 7.62047 7.67549 7.72714 7.89963 8.06658 8.14846 8.31496 8.64957 8.90432 8.98781 10.18155 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.018954 B = 0.002644 C = 0.002503 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1476.939515 B =10588.667895 C =11184.802705 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.794 5.794 2 C 0.076 3.924 3 Si 0.908 3.092 4 H -0.268 1.268 5 H -0.278 1.278 6 H -0.262 1.262 7 C -0.463 4.463 8 H 0.077 0.923 9 C 0.113 3.887 10 C -0.166 4.166 11 C -0.095 4.095 12 C -0.214 4.214 13 C 0.124 3.876 14 N -0.666 5.666 15 C 0.123 3.877 16 H 0.061 0.939 17 C 0.095 3.905 18 O -0.551 6.551 19 C -0.054 4.054 20 C -0.082 4.082 21 C -0.098 4.098 22 C -0.156 4.156 23 C 0.087 3.913 24 F -0.145 7.145 25 C -0.152 4.152 26 C -0.066 4.066 27 C -0.229 4.229 28 H 0.280 0.720 29 H 0.116 0.884 30 H 0.082 0.918 31 H 0.061 0.939 32 H 0.020 0.980 33 H 0.344 0.656 34 H 0.050 0.950 35 H 0.039 0.961 36 H 0.370 0.630 37 H 0.145 0.855 38 H 0.131 0.869 39 H 0.130 0.870 40 H 0.130 0.870 41 H 0.087 0.913 42 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.060 -15.176 -9.000 17.764 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.419 5.419 2 C -0.142 4.142 3 Si 0.732 3.268 4 H -0.193 1.193 5 H -0.204 1.204 6 H -0.186 1.186 7 C -0.492 4.492 8 H 0.095 0.905 9 C 0.110 3.890 10 C -0.185 4.185 11 C -0.114 4.114 12 C -0.215 4.215 13 C -0.004 4.004 14 N -0.298 5.298 15 C 0.013 3.987 16 H 0.079 0.921 17 C 0.016 3.984 18 O -0.355 6.355 19 C -0.055 4.055 20 C -0.101 4.101 21 C -0.116 4.116 22 C -0.175 4.175 23 C 0.068 3.932 24 F -0.124 7.124 25 C -0.172 4.172 26 C -0.085 4.085 27 C -0.249 4.249 28 H 0.091 0.909 29 H 0.134 0.866 30 H 0.100 0.900 31 H 0.079 0.921 32 H 0.038 0.962 33 H 0.164 0.836 34 H 0.068 0.932 35 H 0.058 0.942 36 H 0.215 0.785 37 H 0.163 0.837 38 H 0.149 0.851 39 H 0.148 0.852 40 H 0.148 0.852 41 H 0.105 0.895 42 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -1.973 -14.827 -9.041 17.478 hybrid contribution -0.703 0.533 -0.062 0.884 sum -2.675 -14.294 -9.103 17.156 Atomic orbital electron populations 1.69831 1.07584 1.29149 1.35326 1.25914 0.94714 1.01308 0.92240 0.86324 0.80512 0.80628 0.79324 1.19274 1.20363 1.18620 1.19617 0.98098 0.91290 1.40217 0.90465 1.17628 0.91036 0.92026 0.88270 1.21269 0.99356 0.96647 1.01249 1.20520 0.98345 0.92948 0.99555 1.18823 1.01684 0.92153 1.08858 1.20639 0.94126 0.94889 0.90742 1.60731 1.57162 1.05099 1.06847 1.20569 0.96125 0.92425 0.89568 0.92098 1.22088 0.83378 0.95512 0.97422 1.86597 1.23871 1.55306 1.69726 1.19679 0.93234 0.97651 0.94931 1.21256 0.97676 0.97195 0.93950 1.21097 0.98281 0.98117 0.94110 1.21132 0.92601 1.02958 1.00843 1.17598 0.85224 1.00953 0.89416 1.91480 1.57381 1.86288 1.77244 1.20999 1.00284 1.03696 0.92191 1.20305 0.94775 0.96192 0.97180 1.20973 1.03734 0.92968 1.07185 0.90926 0.86598 0.89980 0.92066 0.96218 0.83628 0.93192 0.94239 0.78454 0.83709 0.85067 0.85175 0.85214 0.89530 0.89147 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -20.46 10.95 55.55 0.61 -19.85 16 2 C 0.08 1.90 5.14 -17.34 -0.09 1.81 16 3 Si 0.91 18.64 29.59 -169.99 -5.03 13.61 16 4 H -0.27 -5.44 7.11 56.52 0.40 -5.04 16 5 H -0.28 -5.59 7.11 56.52 0.40 -5.19 16 6 H -0.26 -5.33 7.11 56.52 0.40 -4.93 16 7 C -0.46 -12.27 9.06 -37.74 -0.34 -12.62 16 8 H 0.08 1.98 7.91 -52.49 -0.41 1.56 16 9 C 0.11 3.00 5.57 -106.82 -0.60 2.41 16 10 C -0.17 -4.27 8.70 -38.87 -0.34 -4.60 16 11 C -0.09 -2.16 9.67 -39.66 -0.38 -2.54 16 12 C -0.21 -4.49 5.41 -104.33 -0.56 -5.06 16 13 C 0.12 2.06 5.60 -4.97 -0.03 2.04 16 14 N -0.67 -10.01 5.62 -109.22 -0.61 -10.62 16 15 C 0.12 1.51 2.65 -68.86 -0.18 1.33 16 16 H 0.06 0.70 7.66 -51.93 -0.40 0.30 16 17 C 0.09 1.04 6.79 37.16 0.25 1.29 16 18 O -0.55 -6.35 12.06 -35.23 -0.43 -6.77 16 19 C -0.05 -0.66 4.59 -104.63 -0.48 -1.14 16 20 C -0.08 -1.01 8.00 -39.58 -0.32 -1.32 16 21 C -0.10 -1.04 10.04 -39.59 -0.40 -1.44 16 22 C -0.16 -1.67 10.03 -39.52 -0.40 -2.06 16 23 C 0.09 1.03 7.30 -39.42 -0.29 0.74 16 24 F -0.15 -1.77 17.27 2.25 0.04 -1.74 16 25 C -0.15 -1.75 9.65 -39.51 -0.38 -2.14 16 26 C -0.07 -1.46 9.67 -39.67 -0.38 -1.84 16 27 C -0.23 -5.62 9.80 -38.87 -0.38 -6.00 16 28 H 0.28 6.57 8.30 -40.82 -0.34 6.23 16 29 H 0.12 3.10 6.16 -52.49 -0.32 2.77 16 30 H 0.08 1.70 8.06 -52.49 -0.42 1.28 16 31 H 0.06 0.98 7.30 -51.93 -0.38 0.60 16 32 H 0.02 0.32 7.99 -51.93 -0.42 -0.10 16 33 H 0.34 5.42 7.97 -39.29 -0.31 5.11 16 34 H 0.05 0.55 7.35 -51.93 -0.38 0.17 16 35 H 0.04 0.36 8.14 -51.93 -0.42 -0.06 16 36 H 0.37 2.70 9.12 45.56 0.42 3.12 16 37 H 0.15 1.94 7.48 -52.49 -0.39 1.55 16 38 H 0.13 1.11 8.06 -52.49 -0.42 0.69 16 39 H 0.13 1.12 8.06 -52.49 -0.42 0.70 16 40 H 0.13 1.29 8.04 -52.49 -0.42 0.87 16 41 H 0.09 1.74 8.06 -52.49 -0.42 1.31 16 42 H 0.09 2.11 8.06 -52.49 -0.42 1.68 16 LS Contribution 358.20 15.07 5.40 5.40 Total: -1.00 -28.46 358.20 -10.01 -38.48 By element: Atomic # 1 Polarization: 17.33 SS G_CDS: -4.70 Total: 12.64 kcal Atomic # 6 Polarization: -25.85 SS G_CDS: -5.29 Total: -31.14 kcal Atomic # 7 Polarization: -30.47 SS G_CDS: -0.01 Total: -30.48 kcal Atomic # 8 Polarization: -6.35 SS G_CDS: -0.43 Total: -6.77 kcal Atomic # 9 Polarization: -1.77 SS G_CDS: 0.04 Total: -1.74 kcal Atomic # 14 Polarization: 18.64 SS G_CDS: -5.03 Total: 13.61 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -28.46 -10.01 -38.48 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343691666.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.160 kcal (2) G-P(sol) polarization free energy of solvation -28.463 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.623 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.015 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.478 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.638 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds