Wall clock time and date at job start Tue Mar 31 2020 10:30:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30823 * 1 3 3 Si 1.86800 * 120.00187 * 2 1 4 4 H 1.48498 * 109.47029 * 270.00017 * 3 2 1 5 5 H 1.48504 * 109.47264 * 29.99404 * 3 2 1 6 6 H 1.48495 * 109.47277 * 149.99739 * 3 2 1 7 7 C 1.39942 * 119.99888 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99810 * 197.85912 * 7 2 1 9 9 C 1.41396 * 120.00062 * 17.86043 * 7 2 1 10 10 C 1.40717 * 120.24274 * 24.38614 * 9 7 2 11 11 C 1.37621 * 119.74203 * 180.02562 * 10 9 7 12 12 C 1.38636 * 120.24689 * 0.02562 * 11 10 9 13 13 C 1.50705 * 119.74654 * 179.97438 * 12 11 10 14 14 N 1.46907 * 109.46882 * 90.00218 * 13 12 11 15 15 C 1.46894 * 110.99835 * 179.97438 * 14 13 12 16 16 H 1.09000 * 109.47727 * 325.00830 * 15 14 13 17 17 C 1.53000 * 109.46946 * 85.00426 * 15 14 13 18 18 O 1.42900 * 109.47229 * 64.99526 * 17 15 14 19 19 C 1.50694 * 109.47161 * 205.00201 * 15 14 13 20 20 C 1.38246 * 119.97346 * 140.00575 * 19 15 14 21 21 C 1.38201 * 120.02730 * 180.02562 * 20 19 15 22 22 C 1.38461 * 119.96969 * 359.97438 * 21 20 19 23 23 F 1.35106 * 120.01996 * 179.97438 * 22 21 20 24 24 C 1.38454 * 119.95136 * 0.25737 * 22 21 20 25 25 C 1.38197 * 119.97436 * 359.46829 * 24 22 21 26 26 C 1.38634 * 120.50584 * 0.25859 * 12 11 10 27 27 C 1.37613 * 120.24509 * 359.44543 * 26 12 11 28 28 H 0.97000 * 119.99985 * 0.02562 * 1 2 3 29 29 H 1.07995 * 120.12745 * 0.02562 * 10 9 7 30 30 H 1.07996 * 119.87326 * 180.02562 * 11 10 9 31 31 H 1.09002 * 109.47193 * 330.00855 * 13 12 11 32 32 H 1.08999 * 109.47276 * 210.00276 * 13 12 11 33 33 H 1.00903 * 110.99547 * 56.05071 * 14 13 12 34 34 H 1.08997 * 109.47381 * 185.00170 * 17 15 14 35 35 H 1.09001 * 109.47274 * 304.99708 * 17 15 14 36 36 H 0.96698 * 113.99956 * 179.97438 * 18 17 15 37 37 H 1.07999 * 119.98931 * 0.02562 * 20 19 15 38 38 H 1.07994 * 120.01738 * 180.02562 * 21 20 19 39 39 H 1.07999 * 120.01223 * 179.74574 * 24 22 21 40 40 H 1.08003 * 119.98991 * 180.30019 * 25 24 22 41 41 H 1.07999 * 119.87603 * 179.69535 * 26 12 11 42 42 H 1.08002 * 120.12942 * 180.27329 * 27 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 2.4898 2.0464 -1.4001 5 1 1.4397 2.6528 0.6999 6 1 3.5398 1.4402 0.7001 7 6 2.0079 -1.2119 0.0005 8 1 3.0489 -1.2343 0.2874 9 6 1.3520 -2.4071 -0.3745 10 6 0.2208 -2.3626 -1.2103 11 6 -0.4099 -3.5321 -1.5684 12 6 0.0649 -4.7508 -1.1086 13 6 -0.6348 -6.0246 -1.5074 14 7 -0.0438 -6.5395 -2.7498 15 6 -0.7020 -7.7839 -3.1695 16 1 -0.9835 -8.3611 -2.2888 17 6 -1.9548 -7.4492 -3.9816 18 8 -1.5759 -6.7944 -5.1938 19 6 0.2455 -8.5919 -4.0181 20 6 0.3041 -9.9653 -3.8714 21 6 1.1731 -10.7074 -4.6486 22 6 1.9849 -10.0748 -5.5749 23 9 2.8352 -10.7992 -6.3349 24 6 1.9288 -8.6987 -5.7175 25 6 1.0550 -7.9594 -4.9432 26 6 1.1750 -4.8062 -0.2800 27 6 1.8251 -3.6498 0.0861 28 1 -0.4850 0.8400 -0.0004 29 1 -0.1509 -1.4143 -1.5692 30 1 -1.2780 -3.5004 -2.2101 31 1 -1.6943 -5.8230 -1.6654 32 1 -0.5199 -6.7653 -0.7160 33 1 0.9511 -6.6736 -2.6485 34 1 -2.4913 -8.3683 -4.2174 35 1 -2.6001 -6.7912 -3.3995 36 1 -2.3217 -6.5527 -5.7600 37 1 -0.3294 -10.4586 -3.1491 38 1 1.2185 -11.7803 -4.5342 39 1 2.5645 -8.2039 -6.4368 40 1 1.0075 -6.8865 -5.0577 41 1 1.5333 -5.7607 0.0763 42 1 2.6924 -3.6955 0.7281 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000343697380.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:30:57 Heat of formation + Delta-G solvation = -53.691355 kcal Electronic energy + Delta-G solvation = -24817.343003 eV Core-core repulsion = 21061.946224 eV Total energy + Delta-G solvation = -3755.396778 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.138 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -48.97477 -39.63682 -37.78912 -36.93678 -35.20795 -33.65964 -31.60661 -31.18692 -29.61844 -29.20060 -27.78528 -26.03622 -23.68096 -23.20408 -22.43957 -20.95184 -20.39560 -19.87224 -17.77956 -17.43055 -17.28466 -16.53483 -16.21198 -15.67962 -15.31480 -14.96722 -14.68236 -14.38754 -14.04196 -13.81450 -13.76167 -13.50999 -13.47352 -13.08652 -12.89868 -12.57522 -12.37089 -12.03508 -11.88886 -11.58925 -11.49184 -11.10755 -11.03561 -10.97904 -10.91893 -10.43253 -10.38820 -9.90558 -9.59496 -9.35529 -9.15682 -9.13155 -8.63662 -8.09223 -7.42566 -7.30077 -6.75719 -4.34211 1.03929 1.19097 2.74720 3.07262 3.09690 3.11066 3.18610 3.51240 3.93571 4.17257 4.23072 4.41028 4.61926 4.66164 4.76322 4.80107 5.17594 5.25164 5.32732 5.45251 5.53283 5.60328 5.73108 5.81889 5.83159 5.88727 5.97981 6.03903 6.22806 6.25395 6.36981 6.45755 6.50539 6.82974 6.97361 7.08127 7.30521 7.35068 7.37213 7.62174 7.67535 7.74611 7.89725 8.07249 8.16106 8.31621 8.66178 8.90800 8.99307 10.18814 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.019927 B = 0.002584 C = 0.002477 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1404.822997 B =10833.395833 C =11302.086817 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.793 5.793 2 C 0.076 3.924 3 Si 0.907 3.093 4 H -0.267 1.267 5 H -0.278 1.278 6 H -0.263 1.263 7 C -0.463 4.463 8 H 0.077 0.923 9 C 0.113 3.887 10 C -0.168 4.168 11 C -0.076 4.076 12 C -0.213 4.213 13 C 0.124 3.876 14 N -0.667 5.667 15 C 0.125 3.875 16 H 0.060 0.940 17 C 0.094 3.906 18 O -0.552 6.552 19 C -0.093 4.093 20 C -0.090 4.090 21 C -0.161 4.161 22 C 0.092 3.908 23 F -0.145 7.145 24 C -0.160 4.160 25 C -0.044 4.044 26 C -0.085 4.085 27 C -0.227 4.227 28 H 0.280 0.720 29 H 0.117 0.883 30 H 0.086 0.914 31 H 0.061 0.939 32 H 0.019 0.981 33 H 0.343 0.657 34 H 0.039 0.961 35 H 0.049 0.951 36 H 0.370 0.630 37 H 0.128 0.872 38 H 0.131 0.869 39 H 0.133 0.867 40 H 0.148 0.852 41 H 0.082 0.918 42 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.376 -15.570 -8.370 17.996 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.418 5.418 2 C -0.142 4.142 3 Si 0.732 3.268 4 H -0.193 1.193 5 H -0.204 1.204 6 H -0.187 1.187 7 C -0.493 4.493 8 H 0.095 0.905 9 C 0.110 3.890 10 C -0.187 4.187 11 C -0.095 4.095 12 C -0.215 4.215 13 C -0.004 4.004 14 N -0.299 5.299 15 C 0.015 3.985 16 H 0.078 0.922 17 C 0.015 3.985 18 O -0.356 6.356 19 C -0.093 4.093 20 C -0.109 4.109 21 C -0.180 4.180 22 C 0.073 3.927 23 F -0.124 7.124 24 C -0.178 4.178 25 C -0.062 4.062 26 C -0.104 4.104 27 C -0.247 4.247 28 H 0.091 0.909 29 H 0.134 0.866 30 H 0.105 0.895 31 H 0.080 0.920 32 H 0.037 0.963 33 H 0.163 0.837 34 H 0.057 0.943 35 H 0.067 0.933 36 H 0.216 0.784 37 H 0.146 0.854 38 H 0.149 0.851 39 H 0.151 0.849 40 H 0.166 0.834 41 H 0.100 0.900 42 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -3.341 -15.127 -8.515 17.677 hybrid contribution 0.239 0.038 0.383 0.453 sum -3.101 -15.089 -8.132 17.419 Atomic orbital electron populations 1.69829 1.07578 1.29163 1.35238 1.25906 0.94714 1.01291 0.92244 0.86328 0.80496 0.80642 0.79339 1.19250 1.20356 1.18653 1.19608 0.98138 0.91341 1.40178 0.90510 1.17629 0.91064 0.91949 0.88326 1.21313 0.99387 0.96822 1.01185 1.20477 0.98262 0.92472 0.98317 1.18834 1.01602 0.92831 1.08189 1.20639 0.97764 0.94091 0.87866 1.60728 1.08055 1.26489 1.34630 1.20539 0.92943 0.90250 0.94782 0.92187 1.22099 0.94991 0.95040 0.86332 1.86588 1.36230 1.80372 1.32374 1.19911 0.97936 0.93221 0.98248 1.20888 0.97949 0.93265 0.98759 1.21004 0.98519 1.00664 0.97843 1.17776 0.91945 0.89779 0.93222 1.91481 1.68787 1.77854 1.74255 1.21242 1.01960 0.91956 1.02673 1.21059 0.91759 1.01421 0.91986 1.20348 0.95625 0.96215 0.98179 1.20921 1.03686 0.92976 1.07124 0.90910 0.86553 0.89536 0.92007 0.96335 0.83746 0.94286 0.93275 0.78433 0.85428 0.85121 0.84874 0.83416 0.89980 0.89211 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -20.47 10.95 55.55 0.61 -19.86 16 2 C 0.08 1.91 5.14 -17.34 -0.09 1.83 16 3 Si 0.91 18.69 29.60 -169.99 -5.03 13.66 16 4 H -0.27 -5.45 7.11 56.52 0.40 -5.05 16 5 H -0.28 -5.59 7.11 56.52 0.40 -5.19 16 6 H -0.26 -5.35 7.11 56.52 0.40 -4.95 16 7 C -0.46 -12.31 9.05 -37.74 -0.34 -12.65 16 8 H 0.08 1.97 7.91 -52.48 -0.41 1.56 16 9 C 0.11 3.00 5.58 -106.82 -0.60 2.41 16 10 C -0.17 -4.34 8.70 -38.87 -0.34 -4.68 16 11 C -0.08 -1.76 9.67 -39.66 -0.38 -2.15 16 12 C -0.21 -4.47 5.42 -104.33 -0.56 -5.04 16 13 C 0.12 2.06 5.60 -4.97 -0.03 2.03 16 14 N -0.67 -9.95 5.63 -109.22 -0.62 -10.56 16 15 C 0.12 1.49 2.65 -68.87 -0.18 1.31 16 16 H 0.06 0.66 7.66 -51.93 -0.40 0.26 16 17 C 0.09 1.03 6.79 37.16 0.25 1.28 16 18 O -0.55 -6.47 12.03 -35.23 -0.42 -6.89 16 19 C -0.09 -1.08 4.59 -104.62 -0.48 -1.56 16 20 C -0.09 -0.91 9.67 -39.59 -0.38 -1.30 16 21 C -0.16 -1.67 10.03 -39.51 -0.40 -2.07 16 22 C 0.09 1.08 7.30 -39.42 -0.29 0.79 16 23 F -0.15 -1.77 17.27 2.25 0.04 -1.73 16 24 C -0.16 -1.87 10.03 -39.52 -0.40 -2.27 16 25 C -0.04 -0.55 8.00 -39.59 -0.32 -0.86 16 26 C -0.08 -1.85 9.67 -39.66 -0.38 -2.24 16 27 C -0.23 -5.55 9.80 -38.87 -0.38 -5.93 16 28 H 0.28 6.57 8.30 -40.82 -0.34 6.23 16 29 H 0.12 3.13 6.16 -52.49 -0.32 2.81 16 30 H 0.09 1.86 8.06 -52.49 -0.42 1.43 16 31 H 0.06 1.00 7.30 -51.93 -0.38 0.62 16 32 H 0.02 0.29 7.99 -51.93 -0.42 -0.12 16 33 H 0.34 5.32 7.98 -39.29 -0.31 5.00 16 34 H 0.04 0.35 8.14 -51.93 -0.42 -0.07 16 35 H 0.05 0.55 7.35 -51.93 -0.38 0.17 16 36 H 0.37 2.82 9.12 45.56 0.42 3.23 16 37 H 0.13 1.01 8.04 -52.49 -0.42 0.58 16 38 H 0.13 1.09 8.06 -52.49 -0.42 0.66 16 39 H 0.13 1.37 8.06 -52.49 -0.42 0.95 16 40 H 0.15 2.02 7.47 -52.48 -0.39 1.63 16 41 H 0.08 1.58 8.06 -52.49 -0.42 1.16 16 42 H 0.09 2.08 8.06 -52.49 -0.42 1.66 16 LS Contribution 358.16 15.07 5.40 5.40 Total: -1.00 -28.52 358.16 -10.01 -38.53 By element: Atomic # 1 Polarization: 17.26 SS G_CDS: -4.69 Total: 12.56 kcal Atomic # 6 Polarization: -25.80 SS G_CDS: -5.29 Total: -31.10 kcal Atomic # 7 Polarization: -30.42 SS G_CDS: -0.01 Total: -30.42 kcal Atomic # 8 Polarization: -6.47 SS G_CDS: -0.42 Total: -6.89 kcal Atomic # 9 Polarization: -1.77 SS G_CDS: 0.04 Total: -1.73 kcal Atomic # 14 Polarization: 18.69 SS G_CDS: -5.03 Total: 13.66 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -28.52 -10.01 -38.53 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343697380.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.158 kcal (2) G-P(sol) polarization free energy of solvation -28.519 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.677 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.015 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.533 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.691 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds