Wall clock time and date at job start Tue Mar 31 2020 10:30:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30823 * 1 3 3 Si 1.86800 * 120.00187 * 2 1 4 4 H 1.48498 * 109.47029 * 270.00017 * 3 2 1 5 5 H 1.48504 * 109.47264 * 29.99404 * 3 2 1 6 6 H 1.48495 * 109.47277 * 149.99739 * 3 2 1 7 7 C 1.39942 * 119.99888 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99810 * 197.85912 * 7 2 1 9 9 C 1.41396 * 120.00062 * 17.86043 * 7 2 1 10 10 C 1.40717 * 120.24274 * 24.38614 * 9 7 2 11 11 C 1.37621 * 119.74203 * 180.02562 * 10 9 7 12 12 C 1.38636 * 120.24689 * 0.02562 * 11 10 9 13 13 C 1.50705 * 119.74654 * 179.97438 * 12 11 10 14 14 N 1.46907 * 109.46882 * 90.00218 * 13 12 11 15 15 C 1.46894 * 110.99835 * 179.97438 * 14 13 12 16 16 H 1.09000 * 109.47727 * 325.00830 * 15 14 13 17 17 C 1.53000 * 109.46946 * 85.00426 * 15 14 13 18 18 O 1.42900 * 109.47229 * 64.99526 * 17 15 14 19 19 C 1.50694 * 109.47161 * 205.00201 * 15 14 13 20 20 C 1.38246 * 119.97346 * 140.00575 * 19 15 14 21 21 C 1.38201 * 120.02730 * 180.02562 * 20 19 15 22 22 C 1.38461 * 119.96969 * 359.97438 * 21 20 19 23 23 F 1.35106 * 120.01996 * 179.97438 * 22 21 20 24 24 C 1.38454 * 119.95136 * 0.25737 * 22 21 20 25 25 C 1.38197 * 119.97436 * 359.46829 * 24 22 21 26 26 C 1.38634 * 120.50584 * 0.25859 * 12 11 10 27 27 C 1.37613 * 120.24509 * 359.44543 * 26 12 11 28 28 H 0.97000 * 119.99985 * 0.02562 * 1 2 3 29 29 H 1.07995 * 120.12745 * 0.02562 * 10 9 7 30 30 H 1.07996 * 119.87326 * 180.02562 * 11 10 9 31 31 H 1.09002 * 109.47193 * 330.00855 * 13 12 11 32 32 H 1.08999 * 109.47276 * 210.00276 * 13 12 11 33 33 H 1.00903 * 110.99547 * 56.05071 * 14 13 12 34 34 H 1.08997 * 109.47381 * 185.00170 * 17 15 14 35 35 H 1.09001 * 109.47274 * 304.99708 * 17 15 14 36 36 H 0.96698 * 113.99956 * 179.97438 * 18 17 15 37 37 H 1.07999 * 119.98931 * 0.02562 * 20 19 15 38 38 H 1.07994 * 120.01738 * 180.02562 * 21 20 19 39 39 H 1.07999 * 120.01223 * 179.74574 * 24 22 21 40 40 H 1.08003 * 119.98991 * 180.30019 * 25 24 22 41 41 H 1.07999 * 119.87603 * 179.69535 * 26 12 11 42 42 H 1.08002 * 120.12942 * 180.27329 * 27 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 2.4898 2.0464 -1.4001 5 1 1.4397 2.6528 0.6999 6 1 3.5398 1.4402 0.7001 7 6 2.0079 -1.2119 0.0005 8 1 3.0489 -1.2343 0.2874 9 6 1.3520 -2.4071 -0.3745 10 6 0.2208 -2.3626 -1.2103 11 6 -0.4099 -3.5321 -1.5684 12 6 0.0649 -4.7508 -1.1086 13 6 -0.6348 -6.0246 -1.5074 14 7 -0.0438 -6.5395 -2.7498 15 6 -0.7020 -7.7839 -3.1695 16 1 -0.9835 -8.3611 -2.2888 17 6 -1.9548 -7.4492 -3.9816 18 8 -1.5759 -6.7944 -5.1938 19 6 0.2455 -8.5919 -4.0181 20 6 0.3041 -9.9653 -3.8714 21 6 1.1731 -10.7074 -4.6486 22 6 1.9849 -10.0748 -5.5749 23 9 2.8352 -10.7992 -6.3349 24 6 1.9288 -8.6987 -5.7175 25 6 1.0550 -7.9594 -4.9432 26 6 1.1750 -4.8062 -0.2800 27 6 1.8251 -3.6498 0.0861 28 1 -0.4850 0.8400 -0.0004 29 1 -0.1509 -1.4143 -1.5692 30 1 -1.2780 -3.5004 -2.2101 31 1 -1.6943 -5.8230 -1.6654 32 1 -0.5199 -6.7653 -0.7160 33 1 0.9511 -6.6736 -2.6485 34 1 -2.4913 -8.3683 -4.2174 35 1 -2.6001 -6.7912 -3.3995 36 1 -2.3217 -6.5527 -5.7600 37 1 -0.3294 -10.4586 -3.1491 38 1 1.2185 -11.7803 -4.5342 39 1 2.5645 -8.2039 -6.4368 40 1 1.0075 -6.8865 -5.0577 41 1 1.5333 -5.7607 0.0763 42 1 2.6924 -3.6955 0.7281 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000343697380.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:30:57 Heat of formation + Delta-G solvation = -70.333620 kcal Electronic energy + Delta-G solvation = -24818.064666 eV Core-core repulsion = 21061.946224 eV Total energy + Delta-G solvation = -3756.118441 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.138 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -49.87950 -40.54202 -39.47306 -37.93580 -36.43207 -35.32920 -32.92030 -32.04990 -31.23028 -30.90148 -28.85752 -27.55976 -25.08419 -24.07399 -23.53477 -22.81580 -21.59766 -21.29756 -19.19493 -18.66399 -18.28838 -17.58155 -17.18248 -17.06992 -16.58391 -15.95855 -15.84557 -15.82440 -15.52170 -15.22801 -14.77912 -14.60116 -14.51165 -14.31367 -14.11869 -13.89352 -13.77606 -13.32656 -13.29444 -13.22937 -12.83610 -12.68852 -12.57200 -12.24296 -12.00548 -11.87729 -11.81190 -11.38812 -11.19709 -10.99745 -10.72428 -9.99243 -9.52076 -9.30627 -9.30029 -9.08717 -8.62064 -6.31005 0.17095 0.35495 0.97856 1.19156 1.37805 1.50743 1.52308 2.21325 2.63960 2.72591 3.31297 3.33890 3.52479 3.78829 3.83221 3.89667 4.01363 4.26956 4.35101 4.42105 4.45943 4.50659 4.60061 4.63829 4.67798 4.74252 4.77449 4.92164 5.04289 5.09972 5.11699 5.18401 5.20645 5.35007 5.42627 5.50194 5.61070 5.74611 5.96992 5.98773 6.13467 6.22778 6.33061 6.42785 6.52501 6.74771 6.97200 7.07787 7.08972 8.34943 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.019927 B = 0.002584 C = 0.002477 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1404.822997 B =10833.395833 C =11302.086817 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.826 5.826 2 C 0.035 3.965 3 Si 0.981 3.019 4 H -0.263 1.263 5 H -0.267 1.267 6 H -0.259 1.259 7 C -0.504 4.504 8 H 0.072 0.928 9 C 0.079 3.921 10 C -0.192 4.192 11 C -0.083 4.083 12 C -0.196 4.196 13 C 0.132 3.868 14 N -0.677 5.677 15 C 0.125 3.875 16 H 0.081 0.919 17 C 0.092 3.908 18 O -0.574 6.574 19 C -0.097 4.097 20 C -0.084 4.084 21 C -0.157 4.157 22 C 0.077 3.923 23 F -0.151 7.151 24 C -0.168 4.168 25 C -0.056 4.056 26 C -0.085 4.085 27 C -0.244 4.244 28 H 0.287 0.713 29 H 0.096 0.904 30 H 0.100 0.900 31 H 0.070 0.930 32 H 0.038 0.962 33 H 0.339 0.661 34 H 0.064 0.936 35 H 0.045 0.955 36 H 0.386 0.614 37 H 0.158 0.842 38 H 0.154 0.846 39 H 0.137 0.863 40 H 0.129 0.871 41 H 0.115 0.885 42 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.096 -17.730 -8.323 20.011 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.452 5.452 2 C -0.180 4.180 3 Si 0.801 3.199 4 H -0.188 1.188 5 H -0.191 1.191 6 H -0.183 1.183 7 C -0.534 4.534 8 H 0.090 0.910 9 C 0.076 3.924 10 C -0.212 4.212 11 C -0.102 4.102 12 C -0.198 4.198 13 C 0.004 3.996 14 N -0.309 5.309 15 C 0.016 3.984 16 H 0.098 0.902 17 C 0.014 3.986 18 O -0.380 6.380 19 C -0.097 4.097 20 C -0.102 4.102 21 C -0.176 4.176 22 C 0.058 3.942 23 F -0.130 7.130 24 C -0.187 4.187 25 C -0.074 4.074 26 C -0.104 4.104 27 C -0.264 4.264 28 H 0.098 0.902 29 H 0.114 0.886 30 H 0.118 0.882 31 H 0.088 0.912 32 H 0.056 0.944 33 H 0.158 0.842 34 H 0.082 0.918 35 H 0.064 0.936 36 H 0.234 0.766 37 H 0.176 0.824 38 H 0.172 0.828 39 H 0.155 0.845 40 H 0.147 0.853 41 H 0.133 0.867 42 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -4.079 -17.306 -8.480 19.699 hybrid contribution 0.399 0.514 0.305 0.718 sum -3.680 -16.792 -8.175 19.036 Atomic orbital electron populations 1.69881 1.08943 1.30408 1.35996 1.26732 0.95500 1.04437 0.91297 0.85230 0.79092 0.76075 0.79457 1.18807 1.19135 1.18298 1.19828 0.98265 0.92742 1.42521 0.90996 1.17963 0.91975 0.93068 0.89356 1.21268 1.00324 0.97134 1.02443 1.20710 0.98538 0.92551 0.98410 1.19315 1.00511 0.94132 1.05802 1.20532 0.97570 0.92231 0.89257 1.60602 1.07925 1.28849 1.33476 1.20660 0.93071 0.89087 0.95622 0.90152 1.22166 0.94477 0.96008 0.85953 1.86554 1.37803 1.80678 1.33009 1.19954 0.97754 0.94006 0.98010 1.21173 0.97748 0.92501 0.98781 1.21305 0.97553 1.01924 0.96795 1.17981 0.92540 0.89800 0.93924 1.91464 1.69095 1.77889 1.74544 1.21318 1.02130 0.92342 1.02906 1.20924 0.92835 1.00603 0.93068 1.20689 0.95349 0.96686 0.97634 1.21138 1.04288 0.93375 1.07564 0.90235 0.88578 0.88167 0.91189 0.94429 0.84227 0.91831 0.93635 0.76628 0.82435 0.82820 0.84486 0.85301 0.86723 0.88904 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -44.14 10.95 21.83 0.24 -43.90 16 2 C 0.03 1.80 5.14 85.26 0.44 2.24 16 3 Si 0.98 39.15 29.60 68.60 2.03 41.18 16 4 H -0.26 -10.24 7.11 99.48 0.71 -9.53 16 5 H -0.27 -10.05 7.11 99.48 0.71 -9.34 16 6 H -0.26 -10.08 7.11 99.48 0.71 -9.38 16 7 C -0.50 -27.96 9.05 23.46 0.21 -27.74 16 8 H 0.07 3.87 7.91 -2.91 -0.02 3.85 16 9 C 0.08 4.34 5.58 -21.29 -0.12 4.22 16 10 C -0.19 -10.32 8.70 22.73 0.20 -10.12 16 11 C -0.08 -3.86 9.67 22.22 0.21 -3.64 16 12 C -0.20 -7.96 5.42 -19.67 -0.11 -8.07 16 13 C 0.13 3.99 5.60 85.56 0.48 4.47 16 14 N -0.68 -18.63 5.63 -499.46 -2.81 -21.44 16 15 C 0.12 2.59 2.65 44.17 0.12 2.70 16 16 H 0.08 1.38 7.66 -2.39 -0.02 1.36 16 17 C 0.09 1.75 6.79 71.98 0.49 2.24 16 18 O -0.57 -12.50 12.03 -148.98 -1.79 -14.29 16 19 C -0.10 -2.00 4.59 -19.86 -0.09 -2.10 16 20 C -0.08 -1.39 9.67 22.26 0.22 -1.18 16 21 C -0.16 -2.78 10.03 22.31 0.22 -2.56 16 22 C 0.08 1.68 7.30 22.37 0.16 1.84 16 23 F -0.15 -3.52 17.27 44.97 0.78 -2.75 16 24 C -0.17 -3.84 10.03 22.31 0.22 -3.61 16 25 C -0.06 -1.34 8.00 22.26 0.18 -1.16 16 26 C -0.09 -3.61 9.67 22.22 0.21 -3.39 16 27 C -0.24 -12.10 9.80 22.73 0.22 -11.87 16 28 H 0.29 13.84 8.30 -92.71 -0.77 13.07 16 29 H 0.10 5.45 6.16 -2.91 -0.02 5.44 16 30 H 0.10 4.27 8.06 -2.91 -0.02 4.25 16 31 H 0.07 2.04 7.30 -2.39 -0.02 2.02 16 32 H 0.04 1.02 7.99 -2.39 -0.02 1.00 16 33 H 0.34 9.85 7.98 -89.69 -0.72 9.14 16 34 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 35 H 0.05 0.89 7.35 -2.39 -0.02 0.87 16 36 H 0.39 5.28 9.12 -74.06 -0.68 4.61 16 37 H 0.16 1.66 8.04 -2.91 -0.02 1.64 16 38 H 0.15 1.97 8.06 -2.91 -0.02 1.95 16 39 H 0.14 2.85 8.06 -2.91 -0.02 2.82 16 40 H 0.13 3.55 7.47 -2.91 -0.02 3.53 16 41 H 0.11 4.08 8.06 -2.91 -0.02 4.06 16 42 H 0.09 4.40 8.06 -2.91 -0.02 4.37 16 Total: -1.00 -63.69 358.16 1.38 -62.31 By element: Atomic # 1 Polarization: 36.94 SS G_CDS: -0.33 Total: 36.61 kcal Atomic # 6 Polarization: -60.99 SS G_CDS: 3.27 Total: -57.72 kcal Atomic # 7 Polarization: -62.77 SS G_CDS: -2.57 Total: -65.34 kcal Atomic # 8 Polarization: -12.50 SS G_CDS: -1.79 Total: -14.29 kcal Atomic # 9 Polarization: -3.52 SS G_CDS: 0.78 Total: -2.75 kcal Atomic # 14 Polarization: 39.15 SS G_CDS: 2.03 Total: 41.18 kcal Total: -63.69 1.38 -62.31 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343697380.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.021 kcal (2) G-P(sol) polarization free energy of solvation -63.691 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.713 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.379 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.312 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.334 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds