Wall clock time and date at job start Tue Mar 31 2020 10:30:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30817 * 1 3 3 Si 1.86809 * 119.99848 * 2 1 4 4 H 1.48498 * 109.47128 * 274.66744 * 3 2 1 5 5 H 1.48500 * 109.46833 * 34.66507 * 3 2 1 6 6 H 1.48504 * 109.47009 * 154.66261 * 3 2 1 7 7 C 1.39944 * 120.00580 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00644 * 162.23313 * 7 2 1 9 9 C 1.41396 * 119.99579 * 342.23264 * 7 2 1 10 10 C 1.40716 * 120.24749 * 155.28983 * 9 7 2 11 11 C 1.37612 * 119.74586 * 180.02562 * 10 9 7 12 12 C 1.38634 * 120.25146 * 0.02562 * 11 10 9 13 13 C 1.50706 * 119.74804 * 179.97438 * 12 11 10 14 14 N 1.46896 * 109.46849 * 89.99918 * 13 12 11 15 15 C 1.46905 * 110.99654 * 179.97438 * 14 13 12 16 16 H 1.08998 * 109.46968 * 35.00355 * 15 14 13 17 17 C 1.52994 * 109.47261 * 275.00156 * 15 14 13 18 18 O 1.42905 * 109.47269 * 294.99839 * 17 15 14 19 19 C 1.50698 * 109.47047 * 154.99925 * 15 14 13 20 20 C 1.38251 * 119.97311 * 39.72983 * 19 15 14 21 21 C 1.38201 * 120.02290 * 179.77099 * 20 19 15 22 22 C 1.38455 * 119.97408 * 0.50120 * 21 20 19 23 23 F 1.35102 * 120.02193 * 179.77515 * 22 21 20 24 24 C 1.38457 * 119.95124 * 359.75029 * 22 21 20 25 25 C 1.38198 * 119.97261 * 0.02562 * 24 22 21 26 26 C 1.38637 * 120.50008 * 0.25155 * 12 11 10 27 27 C 1.37619 * 120.24535 * 359.44730 * 26 12 11 28 28 H 0.97001 * 120.00568 * 359.97438 * 1 2 3 29 29 H 1.08004 * 120.12279 * 359.97438 * 10 9 7 30 30 H 1.08010 * 119.87310 * 179.97438 * 11 10 9 31 31 H 1.09001 * 109.46992 * 329.99769 * 13 12 11 32 32 H 1.09003 * 109.46584 * 209.99993 * 13 12 11 33 33 H 1.00897 * 111.00531 * 303.95186 * 14 13 12 34 34 H 1.09005 * 109.46960 * 175.00261 * 17 15 14 35 35 H 1.09001 * 109.47633 * 54.99975 * 17 15 14 36 36 H 0.96698 * 113.99901 * 180.02562 * 18 17 15 37 37 H 1.07998 * 119.98392 * 0.02562 * 20 19 15 38 38 H 1.08002 * 120.00740 * 180.25614 * 21 20 19 39 39 H 1.08002 * 120.01170 * 179.97438 * 24 22 21 40 40 H 1.08000 * 119.98216 * 180.02562 * 25 24 22 41 41 H 1.08001 * 119.87204 * 179.70449 * 26 12 11 42 42 H 1.07998 * 120.12622 * 180.27655 * 27 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 2.3910 2.1035 -1.3954 5 1 1.4923 2.6222 0.7963 6 1 3.5856 1.4138 0.5992 7 6 2.0080 -1.2119 -0.0005 8 1 3.0494 -1.2341 -0.2859 9 6 1.3516 -2.4074 0.3726 10 6 1.8219 -3.6492 -0.0930 11 6 1.1749 -4.8063 0.2762 12 6 0.0635 -4.7516 1.1031 13 6 -0.6368 -6.0258 1.4999 14 7 -0.0432 -6.5452 2.7392 15 6 -0.7027 -7.7894 3.1575 16 1 -0.9876 -8.3637 2.2760 17 6 -1.9526 -7.4546 3.9739 18 8 -1.5690 -6.8037 5.1869 19 6 0.2457 -8.6015 4.0012 20 6 1.0636 -7.9722 4.9212 21 6 1.9304 -8.7165 5.6989 22 6 1.9870 -10.0917 5.5489 23 9 2.8373 -10.8198 6.3054 24 6 1.1712 -10.7204 4.6235 25 6 0.3018 -9.9745 3.8503 26 6 -0.4120 -3.5333 1.5632 27 6 0.2229 -2.3640 1.2118 28 1 -0.4851 0.8400 0.0004 29 1 2.6868 -3.6940 -0.7383 30 1 1.5338 -5.7606 -0.0803 31 1 -0.5248 -6.7643 0.7060 32 1 -1.6956 -5.8233 1.6611 33 1 0.9513 -6.6801 2.6350 34 1 -2.4900 -8.3734 4.2088 35 1 -2.5982 -6.7937 3.3955 36 1 -2.3127 -6.5622 5.7558 37 1 1.0221 -6.8991 5.0352 38 1 2.5662 -8.2250 6.4204 39 1 1.2148 -11.7930 4.5055 40 1 -0.3349 -10.4648 3.1287 41 1 -1.2815 -3.5022 2.2031 42 1 -0.1465 -1.4164 1.5749 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000343697381.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:30:59 Heat of formation + Delta-G solvation = -70.270704 kcal Electronic energy + Delta-G solvation = -24817.607101 eV Core-core repulsion = 21061.491388 eV Total energy + Delta-G solvation = -3756.115713 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.138 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -49.88017 -40.54175 -39.47252 -37.93535 -36.43126 -35.32801 -32.92048 -32.05002 -31.23015 -30.90074 -28.85830 -27.55918 -25.08363 -24.07413 -23.53453 -22.81491 -21.59770 -21.29732 -19.19461 -18.66395 -18.28865 -17.58132 -17.17949 -17.06813 -16.58393 -15.95905 -15.84595 -15.82309 -15.52188 -15.23099 -14.77718 -14.60181 -14.51231 -14.31339 -14.11918 -13.89287 -13.77455 -13.33096 -13.29024 -13.23593 -12.81915 -12.68449 -12.56428 -12.25314 -12.02093 -11.87832 -11.81275 -11.38860 -11.20492 -10.98608 -10.72411 -9.99258 -9.52047 -9.30486 -9.29892 -9.08336 -8.62004 -6.30801 0.17132 0.35465 0.98092 1.19146 1.37851 1.48800 1.54333 2.21458 2.63989 2.72797 3.31304 3.33882 3.52470 3.78844 3.83281 3.89657 4.01327 4.26981 4.35052 4.42042 4.45957 4.50632 4.60038 4.63812 4.67807 4.74269 4.77454 4.92112 5.04287 5.09924 5.11664 5.18444 5.20647 5.34966 5.42470 5.50177 5.60997 5.74729 5.96987 5.98788 6.13488 6.22883 6.32964 6.42904 6.52588 6.74755 6.97288 7.07835 7.08973 8.35120 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.019954 B = 0.002583 C = 0.002476 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1402.915309 B =10837.006315 C =11305.882846 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.826 5.826 2 C 0.035 3.965 3 Si 0.980 3.020 4 H -0.262 1.262 5 H -0.266 1.266 6 H -0.260 1.260 7 C -0.504 4.504 8 H 0.072 0.928 9 C 0.079 3.921 10 C -0.244 4.244 11 C -0.085 4.085 12 C -0.196 4.196 13 C 0.132 3.868 14 N -0.677 5.677 15 C 0.125 3.875 16 H 0.081 0.919 17 C 0.093 3.907 18 O -0.574 6.574 19 C -0.096 4.096 20 C -0.056 4.056 21 C -0.168 4.168 22 C 0.077 3.923 23 F -0.151 7.151 24 C -0.157 4.157 25 C -0.084 4.084 26 C -0.083 4.083 27 C -0.192 4.192 28 H 0.287 0.713 29 H 0.093 0.907 30 H 0.115 0.885 31 H 0.038 0.962 32 H 0.070 0.930 33 H 0.339 0.661 34 H 0.064 0.936 35 H 0.045 0.955 36 H 0.386 0.614 37 H 0.129 0.871 38 H 0.137 0.863 39 H 0.154 0.846 40 H 0.158 0.842 41 H 0.100 0.900 42 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.106 -17.735 8.278 19.998 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.453 5.453 2 C -0.179 4.179 3 Si 0.800 3.200 4 H -0.187 1.187 5 H -0.190 1.190 6 H -0.184 1.184 7 C -0.534 4.534 8 H 0.090 0.910 9 C 0.077 3.923 10 C -0.264 4.264 11 C -0.104 4.104 12 C -0.197 4.197 13 C 0.004 3.996 14 N -0.309 5.309 15 C 0.016 3.984 16 H 0.098 0.902 17 C 0.014 3.986 18 O -0.380 6.380 19 C -0.097 4.097 20 C -0.075 4.075 21 C -0.187 4.187 22 C 0.057 3.943 23 F -0.130 7.130 24 C -0.176 4.176 25 C -0.102 4.102 26 C -0.102 4.102 27 C -0.211 4.211 28 H 0.098 0.902 29 H 0.111 0.889 30 H 0.133 0.867 31 H 0.056 0.944 32 H 0.088 0.912 33 H 0.158 0.842 34 H 0.082 0.918 35 H 0.064 0.936 36 H 0.234 0.766 37 H 0.147 0.853 38 H 0.155 0.845 39 H 0.172 0.828 40 H 0.176 0.824 41 H 0.118 0.882 42 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -4.088 -17.312 8.443 19.690 hybrid contribution 0.394 0.518 -0.322 0.726 sum -3.694 -16.795 8.120 19.017 Atomic orbital electron populations 1.69876 1.08955 1.30410 1.36022 1.26730 0.95491 1.04439 0.91280 0.85240 0.79189 0.76171 0.79377 1.18660 1.19007 1.18428 1.19821 0.98223 0.92737 1.42610 0.90987 1.17959 0.91970 0.93071 0.89343 1.21142 1.04399 0.93379 1.07454 1.20690 0.95360 0.96678 0.97634 1.19316 1.00432 0.94130 1.05869 1.20529 0.97550 0.92206 0.89295 1.60583 1.07855 1.28737 1.33703 1.20661 0.93073 0.89054 0.95641 0.90152 1.22167 0.94459 0.96053 0.85922 1.86555 1.37823 1.80864 1.32804 1.19954 0.97659 0.94010 0.98084 1.20926 0.92879 1.00579 0.93079 1.21319 1.02225 0.92326 1.02807 1.17978 0.92518 0.89754 0.94003 1.91463 1.69090 1.77694 1.74743 1.21304 0.97474 1.01928 0.96863 1.21170 0.97784 0.92479 0.98778 1.20710 0.98508 0.92555 0.98440 1.21259 1.00324 0.97120 1.02431 0.90235 0.88898 0.86729 0.94437 0.91184 0.84214 0.91828 0.93630 0.76629 0.85306 0.84484 0.82818 0.82435 0.88166 0.88623 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -44.16 10.97 21.83 0.24 -43.92 16 2 C 0.04 1.81 5.14 85.26 0.44 2.25 16 3 Si 0.98 39.10 29.60 68.60 2.03 41.13 16 4 H -0.26 -9.99 7.11 99.48 0.71 -9.28 16 5 H -0.27 -10.07 7.11 99.48 0.71 -9.36 16 6 H -0.26 -10.27 7.11 99.48 0.71 -9.56 16 7 C -0.50 -27.98 9.05 23.46 0.21 -27.77 16 8 H 0.07 3.87 7.91 -2.91 -0.02 3.85 16 9 C 0.08 4.35 5.57 -21.29 -0.12 4.24 16 10 C -0.24 -12.10 9.80 22.73 0.22 -11.88 16 11 C -0.09 -3.61 9.67 22.22 0.21 -3.39 16 12 C -0.20 -7.96 5.42 -19.67 -0.11 -8.07 16 13 C 0.13 4.00 5.60 85.56 0.48 4.48 16 14 N -0.68 -18.64 5.62 -499.46 -2.81 -21.44 16 15 C 0.12 2.59 2.65 44.17 0.12 2.71 16 16 H 0.08 1.38 7.66 -2.39 -0.02 1.36 16 17 C 0.09 1.75 6.79 71.98 0.49 2.24 16 18 O -0.57 -12.51 12.06 -148.98 -1.80 -14.31 16 19 C -0.10 -2.00 4.59 -19.86 -0.09 -2.09 16 20 C -0.06 -1.34 8.00 22.26 0.18 -1.17 16 21 C -0.17 -3.83 10.03 22.31 0.22 -3.61 16 22 C 0.08 1.68 7.30 22.37 0.16 1.84 16 23 F -0.15 -3.52 17.27 44.97 0.78 -2.74 16 24 C -0.16 -2.78 10.03 22.31 0.22 -2.55 16 25 C -0.08 -1.39 9.67 22.26 0.22 -1.18 16 26 C -0.08 -3.86 9.67 22.22 0.21 -3.65 16 27 C -0.19 -10.30 8.70 22.73 0.20 -10.11 16 28 H 0.29 13.83 8.30 -92.71 -0.77 13.06 16 29 H 0.09 4.40 8.06 -2.91 -0.02 4.38 16 30 H 0.11 4.08 8.06 -2.91 -0.02 4.06 16 31 H 0.04 1.02 7.99 -2.39 -0.02 1.00 16 32 H 0.07 2.04 7.30 -2.39 -0.02 2.02 16 33 H 0.34 9.85 7.97 -89.70 -0.72 9.14 16 34 H 0.06 0.90 8.14 -2.38 -0.02 0.88 16 35 H 0.05 0.89 7.35 -2.39 -0.02 0.88 16 36 H 0.39 5.29 9.12 -74.06 -0.68 4.61 16 37 H 0.13 3.55 7.48 -2.91 -0.02 3.53 16 38 H 0.14 2.85 8.06 -2.91 -0.02 2.82 16 39 H 0.15 1.97 8.06 -2.91 -0.02 1.95 16 40 H 0.16 1.66 8.04 -2.91 -0.02 1.64 16 41 H 0.10 4.27 8.06 -2.91 -0.02 4.25 16 42 H 0.10 5.43 6.18 -2.91 -0.02 5.41 16 Total: -1.00 -63.75 358.22 1.38 -62.37 By element: Atomic # 1 Polarization: 36.96 SS G_CDS: -0.33 Total: 36.62 kcal Atomic # 6 Polarization: -60.98 SS G_CDS: 3.27 Total: -57.70 kcal Atomic # 7 Polarization: -62.79 SS G_CDS: -2.57 Total: -65.36 kcal Atomic # 8 Polarization: -12.51 SS G_CDS: -1.80 Total: -14.31 kcal Atomic # 9 Polarization: -3.52 SS G_CDS: 0.78 Total: -2.74 kcal Atomic # 14 Polarization: 39.10 SS G_CDS: 2.03 Total: 41.13 kcal Total: -63.75 1.38 -62.37 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343697381.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.898 kcal (2) G-P(sol) polarization free energy of solvation -63.753 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.651 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.380 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.373 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.271 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds