Wall clock time and date at job start Tue Mar 31 2020 10:39:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86800 * 120.00005 * 2 1 4 4 H 1.48499 * 109.46616 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47104 * 299.99522 * 3 2 1 6 6 H 1.48489 * 109.47200 * 59.99802 * 3 2 1 7 7 C 1.37876 * 119.99563 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99683 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00428 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47466 * 179.97438 * 9 7 2 11 11 O 1.42898 * 109.47319 * 180.02562 * 10 9 7 12 12 C 1.35900 * 117.00172 * 179.97438 * 11 10 9 13 13 C 1.38746 * 120.05467 * 359.72752 * 12 11 10 14 14 C 1.38129 * 119.94586 * 179.74253 * 13 12 11 15 15 C 1.38288 * 120.05279 * 0.50650 * 14 13 12 16 16 C 1.38250 * 120.10917 * 359.76642 * 15 14 13 17 17 C 1.50704 * 119.96871 * 179.97438 * 16 15 14 18 18 N 1.46898 * 109.47159 * 270.02290 * 17 16 15 19 19 C 1.46900 * 111.00021 * 180.02562 * 18 17 16 20 20 C 1.52992 * 109.46964 * 180.02562 * 19 18 17 21 21 H 1.09004 * 109.47516 * 304.99618 * 20 19 18 22 22 O 1.42901 * 109.47655 * 65.00302 * 20 19 18 23 23 C 1.53004 * 109.46837 * 184.99871 * 20 19 18 24 24 F 1.39905 * 109.47018 * 179.97438 * 23 20 19 25 25 F 1.39896 * 109.47151 * 299.99907 * 23 20 19 26 26 C 1.38162 * 120.05723 * 359.97438 * 16 15 14 27 27 H 0.97002 * 119.99731 * 0.02562 * 1 2 3 28 28 H 1.09002 * 109.47120 * 59.99671 * 9 7 2 29 29 H 1.08998 * 109.46862 * 300.00473 * 9 7 2 30 30 H 1.09002 * 109.47153 * 59.99773 * 10 9 7 31 31 H 1.09001 * 109.46832 * 299.99964 * 10 9 7 32 32 H 1.08010 * 120.02919 * 359.97292 * 13 12 11 33 33 H 1.07992 * 119.97408 * 180.25091 * 14 13 12 34 34 H 1.07997 * 119.94352 * 179.74725 * 15 14 13 35 35 H 1.09003 * 109.46632 * 30.02434 * 17 16 15 36 36 H 1.08996 * 109.46429 * 150.02007 * 17 16 15 37 37 H 1.00895 * 110.99940 * 303.95620 * 18 17 16 38 38 H 1.09008 * 109.46830 * 300.00052 * 19 18 17 39 39 H 1.08997 * 109.46985 * 59.99504 * 19 18 17 40 40 H 0.96700 * 113.99773 * 59.99487 * 22 20 19 41 41 H 1.09001 * 109.47225 * 60.00422 * 23 20 19 42 42 H 1.07998 * 120.02891 * 180.02562 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8905 2.3964 -1.2126 6 1 1.8904 2.3964 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2451 -3.6621 0.0005 11 8 1.5306 -4.8996 -0.0001 12 6 2.2707 -6.0394 -0.0007 13 6 3.6563 -5.9682 -0.0064 14 6 4.4064 -7.1281 -0.0017 15 6 3.7773 -8.3596 -0.0018 16 6 2.3968 -8.4332 -0.0018 17 6 1.7145 -9.7770 -0.0025 18 7 1.4933 -10.2131 -1.3877 19 6 0.8280 -11.5222 -1.4275 20 6 0.6157 -11.9422 -2.8833 21 1 0.0690 -11.1607 -3.4110 22 8 1.8837 -12.1434 -3.5109 23 6 -0.1869 -13.2441 -2.9265 24 9 -0.3816 -13.6279 -4.2578 25 9 0.5147 -14.2472 -2.2493 26 6 1.6421 -7.2759 -0.0011 27 1 -0.4850 0.8401 -0.0004 28 1 0.6246 -2.5571 -0.8897 29 1 0.6240 -2.5566 0.8902 30 1 2.8718 -3.6044 0.8905 31 1 2.8718 -3.6044 -0.8895 32 1 4.1481 -5.0066 -0.0109 33 1 5.4849 -7.0732 -0.0020 34 1 4.3655 -9.2654 -0.0022 35 1 2.3435 -10.5040 0.5114 36 1 0.7564 -9.6981 0.5111 37 1 0.9668 -9.5244 -1.9038 38 1 1.4505 -12.2616 -0.9234 39 1 -0.1363 -11.4551 -0.9239 40 1 2.4254 -12.8267 -3.0928 41 1 -1.1542 -13.0907 -2.4479 42 1 0.5637 -7.3340 -0.0007 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000344765521.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:39:50 Heat of formation + Delta-G solvation = -202.292803 kcal Electronic energy + Delta-G solvation = -24814.934360 eV Core-core repulsion = 20622.324514 eV Total energy + Delta-G solvation = -4192.609846 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.143 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -49.96379 -47.99499 -41.07924 -39.16098 -38.44144 -36.25069 -35.45815 -32.78504 -32.57511 -30.94430 -30.41714 -27.34791 -26.78094 -24.78490 -23.42687 -23.32192 -22.84926 -21.52220 -19.20209 -18.70623 -18.67442 -18.23029 -18.04797 -17.16955 -16.94720 -16.89528 -16.77050 -16.41844 -16.23323 -15.63245 -15.31722 -15.18332 -14.81068 -14.38449 -14.35131 -14.34376 -14.31250 -14.21935 -13.81280 -13.43532 -13.14066 -13.04177 -12.98917 -12.75477 -12.60734 -12.54218 -12.32539 -12.04727 -11.86625 -11.59962 -11.56524 -11.37681 -10.96855 -10.63965 -9.87328 -9.36540 -9.08643 -8.28120 -6.41626 0.33871 0.55103 1.40424 1.41213 1.54762 2.26185 2.46230 2.52903 2.84778 3.06364 3.17626 3.27646 3.41816 3.62187 3.82370 3.89295 3.91916 4.10560 4.17024 4.19715 4.23917 4.25655 4.36431 4.45507 4.57160 4.59705 4.68264 4.72974 4.79855 4.85711 5.12601 5.30798 5.43256 5.45519 5.53454 5.64201 5.67775 5.87752 5.96344 6.07064 6.30049 6.56916 6.64693 6.73297 7.28536 8.85176 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.023828 B = 0.001886 C = 0.001805 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1174.797409 B =14846.408687 C =15505.133890 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.001 3.999 3 Si 0.976 3.024 4 H -0.258 1.258 5 H -0.277 1.277 6 H -0.276 1.276 7 C -0.545 4.545 8 H 0.070 0.930 9 C 0.028 3.972 10 C 0.085 3.915 11 O -0.342 6.342 12 C 0.105 3.895 13 C -0.223 4.223 14 C -0.081 4.081 15 C -0.140 4.140 16 C -0.046 4.046 17 C 0.108 3.892 18 N -0.685 5.685 19 C 0.031 3.969 20 C 0.068 3.932 21 H 0.128 0.872 22 O -0.556 6.556 23 C 0.229 3.771 24 F -0.216 7.216 25 F -0.212 7.212 26 C -0.162 4.162 27 H 0.267 0.733 28 H -0.002 1.002 29 H -0.001 1.001 30 H 0.059 0.941 31 H 0.058 0.942 32 H 0.124 0.876 33 H 0.148 0.852 34 H 0.147 0.853 35 H 0.098 0.902 36 H 0.050 0.950 37 H 0.344 0.656 38 H 0.092 0.908 39 H 0.067 0.933 40 H 0.388 0.612 41 H 0.154 0.846 42 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.215 -28.739 -1.426 28.953 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.198 4.198 3 Si 0.800 3.200 4 H -0.182 1.182 5 H -0.202 1.202 6 H -0.202 1.202 7 C -0.583 4.583 8 H 0.088 0.912 9 C -0.009 4.009 10 C 0.011 3.989 11 O -0.256 6.256 12 C 0.060 3.940 13 C -0.242 4.242 14 C -0.099 4.099 15 C -0.159 4.159 16 C -0.047 4.047 17 C -0.020 4.020 18 N -0.316 5.316 19 C -0.099 4.099 20 C 0.007 3.993 21 H 0.146 0.854 22 O -0.362 6.362 23 C 0.174 3.826 24 F -0.197 7.197 25 F -0.193 7.193 26 C -0.182 4.182 27 H 0.076 0.924 28 H 0.017 0.983 29 H 0.017 0.983 30 H 0.077 0.923 31 H 0.076 0.924 32 H 0.142 0.858 33 H 0.166 0.834 34 H 0.165 0.835 35 H 0.117 0.883 36 H 0.068 0.932 37 H 0.163 0.837 38 H 0.110 0.890 39 H 0.085 0.915 40 H 0.238 0.762 41 H 0.171 0.829 42 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 3.283 -28.450 -1.895 28.701 hybrid contribution -0.542 1.048 0.494 1.279 sum 2.741 -27.402 -1.400 27.574 Atomic orbital electron populations 1.70126 1.08010 1.28172 1.50663 1.26050 0.95859 1.03704 0.94175 0.85227 0.79029 0.77855 0.77896 1.18173 1.20218 1.20196 1.21425 0.93817 0.91041 1.52039 0.91182 1.18966 0.94545 0.91374 0.96015 1.22836 0.95372 0.80320 1.00367 1.86072 1.37443 1.13751 1.88354 1.19505 0.91041 0.86938 0.96562 1.21503 0.92730 1.00869 1.09120 1.21242 1.00813 0.91352 0.96499 1.21180 0.93924 0.98107 1.02645 1.19686 0.93863 0.93766 0.97377 1.20850 0.99334 0.92026 0.89781 1.60351 1.53965 1.04331 1.12975 1.22592 0.99612 0.92572 0.95074 1.23116 0.85875 0.94948 0.95388 0.85417 1.86650 1.28770 1.62497 1.58318 1.23107 0.98736 0.85273 0.75440 1.92983 1.96069 1.92455 1.38236 1.92962 1.81878 1.64570 1.79895 1.20456 1.00468 0.89411 1.07828 0.92425 0.98319 0.98264 0.92300 0.92391 0.85771 0.83440 0.83515 0.88350 0.93170 0.83730 0.88973 0.91520 0.76226 0.82907 0.85494 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.55 13.29 21.45 0.28 -56.27 16 2 C 0.00 0.04 5.46 84.65 0.46 0.50 16 3 Si 0.98 43.51 29.54 68.60 2.03 45.54 16 4 H -0.26 -10.83 7.11 99.48 0.71 -10.13 16 5 H -0.28 -12.01 7.11 99.48 0.71 -11.30 16 6 H -0.28 -11.98 7.11 99.48 0.71 -11.27 16 7 C -0.55 -30.88 9.11 25.60 0.23 -30.65 16 8 H 0.07 3.72 7.74 -2.91 -0.02 3.69 16 9 C 0.03 1.55 5.34 29.85 0.16 1.71 16 10 C 0.09 3.77 4.68 71.98 0.34 4.11 16 11 O -0.34 -14.51 10.14 -92.43 -0.94 -15.45 16 12 C 0.10 3.63 6.69 22.50 0.15 3.78 16 13 C -0.22 -6.83 9.04 22.37 0.20 -6.62 16 14 C -0.08 -1.93 10.04 22.26 0.22 -1.70 16 15 C -0.14 -2.94 9.70 22.28 0.22 -2.73 16 16 C -0.05 -1.01 5.39 -19.88 -0.11 -1.11 16 17 C 0.11 1.57 5.81 85.56 0.50 2.07 16 18 N -0.68 -9.52 6.44 -517.94 -3.34 -12.85 16 19 C 0.03 0.26 5.14 86.30 0.44 0.70 16 20 C 0.07 0.67 3.35 30.59 0.10 0.78 16 21 H 0.13 1.22 8.14 -2.38 -0.02 1.20 16 22 O -0.56 -8.62 13.23 -148.98 -1.97 -10.59 16 23 C 0.23 2.00 5.03 71.98 0.36 2.36 16 24 F -0.22 -3.41 17.28 44.97 0.78 -2.63 16 25 F -0.21 -2.45 16.53 44.97 0.74 -1.71 16 26 C -0.16 -4.58 9.64 22.36 0.22 -4.37 16 27 H 0.27 15.08 8.31 -92.71 -0.77 14.31 16 28 H 0.00 -0.10 8.14 -2.39 -0.02 -0.12 16 29 H 0.00 -0.06 8.14 -2.39 -0.02 -0.08 16 30 H 0.06 2.45 7.68 -2.39 -0.02 2.43 16 31 H 0.06 2.43 7.65 -2.39 -0.02 2.41 16 32 H 0.12 3.82 6.30 -2.91 -0.02 3.80 16 33 H 0.15 2.65 8.06 -2.91 -0.02 2.63 16 34 H 0.15 2.29 8.06 -2.91 -0.02 2.27 16 35 H 0.10 1.15 8.09 -2.39 -0.02 1.13 16 36 H 0.05 0.66 8.08 -2.39 -0.02 0.64 16 37 H 0.34 5.24 8.72 -89.70 -0.78 4.46 16 38 H 0.09 0.71 7.94 -2.38 -0.02 0.69 16 39 H 0.07 0.32 8.14 -2.39 -0.02 0.30 16 40 H 0.39 4.02 8.69 -74.06 -0.64 3.38 16 41 H 0.15 0.20 8.14 -2.39 -0.02 0.18 16 42 H 0.13 3.37 8.06 -2.91 -0.02 3.35 16 Total: -1.00 -71.86 366.27 0.71 -71.15 By element: Atomic # 1 Polarization: 14.36 SS G_CDS: -0.38 Total: 13.98 kcal Atomic # 6 Polarization: -34.67 SS G_CDS: 3.50 Total: -31.17 kcal Atomic # 7 Polarization: -66.07 SS G_CDS: -3.05 Total: -69.12 kcal Atomic # 8 Polarization: -23.13 SS G_CDS: -2.91 Total: -26.04 kcal Atomic # 9 Polarization: -5.86 SS G_CDS: 1.52 Total: -4.34 kcal Atomic # 14 Polarization: 43.51 SS G_CDS: 2.03 Total: 45.54 kcal Total: -71.86 0.71 -71.15 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344765521.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -131.141 kcal (2) G-P(sol) polarization free energy of solvation -71.860 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -203.001 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.708 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.152 kcal (6) G-S(sol) free energy of system = (1) + (5) -202.293 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds