Wall clock time and date at job start Tue Mar 31 2020 10:33:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13603 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 N 1.46505 * 109.46675 * 125.57416 * 3 2 1 5 5 C 1.36908 * 120.00214 * 274.86883 * 4 3 2 6 6 H 1.08002 * 120.00186 * 188.48677 * 5 4 3 7 7 C 1.39013 * 119.99596 * 8.49669 * 5 4 3 8 8 N 1.31384 * 120.00475 * 14.89125 * 7 5 4 9 9 Si 1.86800 * 119.99758 * 194.88291 * 7 5 4 10 10 H 1.48504 * 109.47178 * 0.02562 * 9 7 5 11 11 H 1.48502 * 109.46782 * 120.00179 * 9 7 5 12 12 H 1.48496 * 109.47638 * 240.00133 * 9 7 5 13 13 C 1.34782 * 119.99627 * 94.87935 * 4 3 2 14 14 O 1.21634 * 119.99588 * 184.93935 * 13 4 3 15 15 C 1.47406 * 120.00325 * 4.92859 * 13 4 3 16 16 C 1.39858 * 120.07686 * 310.28597 * 15 13 4 17 17 C 1.37124 * 119.92199 * 179.97438 * 16 15 13 18 18 C 1.39229 * 120.07698 * 359.97438 * 17 16 15 19 19 N 1.39059 * 119.92695 * 180.02562 * 18 17 16 20 20 C 1.47014 * 111.00102 * 180.02562 * 19 18 17 21 21 C 1.53100 * 109.25453 * 177.60331 * 20 19 18 22 22 O 1.43018 * 109.25605 * 56.85281 * 21 20 19 23 23 C 1.43009 * 113.73697 * 301.32295 * 22 21 20 24 24 C 1.47005 * 110.99775 * 56.36459 * 19 18 17 25 25 C 1.39239 * 120.15015 * 0.27947 * 18 17 16 26 26 C 1.37113 * 120.07491 * 359.48564 * 25 18 17 27 27 H 1.08997 * 109.47656 * 5.57530 * 3 2 1 28 28 H 1.08997 * 109.47342 * 245.56857 * 3 2 1 29 29 H 0.97001 * 120.00087 * 180.02562 * 8 7 5 30 30 H 1.07997 * 120.03598 * 359.95108 * 16 15 13 31 31 H 1.07998 * 119.95805 * 180.02562 * 17 16 15 32 32 H 1.09003 * 109.50471 * 57.67076 * 20 19 18 33 33 H 1.08998 * 109.50644 * 297.53926 * 20 19 18 34 34 H 1.09000 * 109.50170 * 176.77971 * 21 20 19 35 35 H 1.08992 * 109.51120 * 296.87078 * 21 20 19 36 36 H 1.09003 * 109.50833 * 178.60683 * 23 22 21 37 37 H 1.08997 * 109.50988 * 298.74046 * 23 22 21 38 38 H 1.08997 * 109.51055 * 62.45787 * 24 19 18 39 39 H 1.09002 * 109.51123 * 302.32719 * 24 19 18 40 40 H 1.07994 * 119.96294 * 179.72564 * 25 18 17 41 41 H 1.08004 * 120.04236 * 180.28464 * 26 25 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 7 3.0959 0.8045 -1.1235 5 6 3.2294 0.2386 -2.3630 6 1 3.7154 0.7861 -3.1571 7 6 2.7393 -1.0405 -2.5995 8 7 1.9024 -1.5910 -1.7494 9 14 3.2702 -1.9766 -4.1264 10 1 4.2112 -1.1424 -4.9163 11 1 3.9446 -3.2372 -3.7245 12 1 2.0775 -2.2947 -4.9518 13 6 3.4135 2.1009 -0.9367 14 8 3.7324 2.7917 -1.8857 15 6 3.3742 2.6817 0.4175 16 6 2.2466 2.5015 1.2251 17 6 2.2137 3.0427 2.4845 18 6 3.3012 3.7706 2.9599 19 7 3.2646 4.3176 4.2378 20 6 4.5083 5.0425 4.5364 21 6 4.4016 5.6773 5.9255 22 8 4.1241 4.6582 6.8898 23 6 2.9195 3.9326 6.6300 24 6 3.0105 3.2802 5.2479 25 6 4.4232 3.9564 2.1566 26 6 4.4648 3.4139 0.8981 27 1 2.9719 -1.0219 -0.0998 28 1 2.9712 0.4258 0.9356 29 1 1.5607 -2.4838 -1.9143 30 1 1.4027 1.9369 0.8569 31 1 1.3434 2.9035 3.1087 32 1 4.6630 5.8224 3.7907 33 1 5.3480 4.3478 4.5171 34 1 5.3427 6.1676 6.1748 35 1 3.5964 6.4118 5.9292 36 1 2.7884 3.1610 7.3887 37 1 2.0705 4.6158 6.6543 38 1 3.8260 2.5570 5.2401 39 1 2.0721 2.7739 5.0216 40 1 5.2633 4.5253 2.5267 41 1 5.3372 3.5545 0.2772 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000355705977.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:33:29 Heat of formation + Delta-G solvation = -3.236469 kcal Electronic energy + Delta-G solvation = -26011.858524 eV Core-core repulsion = 22278.569595 eV Total energy + Delta-G solvation = -3733.288929 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.137 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.72961 -40.78667 -39.10613 -37.72560 -36.55785 -36.13206 -33.82909 -32.79722 -31.64267 -31.27856 -29.26244 -28.11599 -26.56332 -25.55694 -23.70045 -23.01375 -21.73825 -20.98329 -19.91979 -18.80130 -18.31941 -18.02297 -17.18176 -16.94748 -16.60396 -16.34276 -16.07697 -15.96482 -15.79261 -15.48354 -15.33948 -14.94714 -14.80823 -14.48025 -14.32129 -13.93887 -13.55100 -13.40561 -13.35696 -13.14857 -12.97676 -12.96374 -12.65400 -12.36327 -12.35072 -12.22004 -12.09725 -11.83216 -11.59504 -11.21143 -11.06107 -10.60900 -10.37552 -10.12619 -9.99561 -8.86151 -8.44528 -6.02116 0.02164 0.41203 1.35933 1.44545 1.57671 1.78022 1.97756 2.23905 2.32119 2.49557 2.79316 2.94851 2.96224 3.10262 3.59200 3.75942 3.86068 3.87917 3.94593 3.96976 4.16113 4.23252 4.30428 4.34001 4.46781 4.53009 4.54673 4.61235 4.73288 4.81022 4.91252 4.94082 4.97772 5.03455 5.15869 5.21845 5.40663 5.50090 5.61227 5.88690 5.92594 6.16898 6.19721 6.32985 6.98487 7.02516 7.25191 7.81309 8.54872 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.025615 B = 0.003252 C = 0.003032 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1092.840580 B = 8608.247617 C = 9231.906487 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.510 5.510 2 C 0.271 3.729 3 C 0.223 3.777 4 N -0.445 5.445 5 C -0.338 4.338 6 H 0.088 0.912 7 C 0.003 3.997 8 N -0.895 5.895 9 Si 0.996 3.004 10 H -0.271 1.271 11 H -0.260 1.260 12 H -0.285 1.285 13 C 0.483 3.517 14 O -0.620 6.620 15 C -0.148 4.148 16 C -0.080 4.080 17 C -0.137 4.137 18 C 0.128 3.872 19 N -0.492 5.492 20 C 0.007 3.993 21 C 0.063 3.937 22 O -0.402 6.402 23 C 0.063 3.937 24 C 0.017 3.983 25 C -0.164 4.164 26 C -0.051 4.051 27 H 0.131 0.869 28 H 0.118 0.882 29 H 0.278 0.722 30 H 0.109 0.891 31 H 0.144 0.856 32 H 0.104 0.896 33 H 0.061 0.939 34 H 0.122 0.878 35 H 0.063 0.937 36 H 0.120 0.880 37 H 0.065 0.935 38 H 0.053 0.947 39 H 0.101 0.899 40 H 0.159 0.841 41 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.510 7.821 18.979 21.535 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.192 5.192 2 C -0.046 4.046 3 C 0.097 3.903 4 N -0.163 5.163 5 C -0.465 4.465 6 H 0.106 0.894 7 C -0.198 4.198 8 N -0.535 5.535 9 Si 0.820 3.180 10 H -0.196 1.196 11 H -0.185 1.185 12 H -0.212 1.212 13 C 0.274 3.726 14 O -0.507 6.507 15 C -0.152 4.152 16 C -0.100 4.100 17 C -0.157 4.157 18 C 0.029 3.971 19 N -0.207 5.207 20 C -0.119 4.119 21 C -0.014 4.014 22 O -0.320 6.320 23 C -0.013 4.013 24 C -0.108 4.108 25 C -0.184 4.184 26 C -0.071 4.071 27 H 0.149 0.851 28 H 0.136 0.864 29 H 0.089 0.911 30 H 0.126 0.874 31 H 0.162 0.838 32 H 0.122 0.878 33 H 0.079 0.921 34 H 0.140 0.860 35 H 0.081 0.919 36 H 0.138 0.862 37 H 0.083 0.917 38 H 0.071 0.929 39 H 0.120 0.880 40 H 0.177 0.823 41 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 4.630 8.253 18.790 21.039 hybrid contribution 0.524 -1.108 -1.785 2.165 sum 5.154 7.145 17.006 19.152 Atomic orbital electron populations 1.80893 1.14302 1.12194 1.11767 1.29324 0.95489 0.89772 0.90012 1.19194 0.80755 1.00331 0.90017 1.43764 1.55371 1.08088 1.09067 1.19839 1.37619 0.99335 0.89725 0.89435 1.25977 0.94435 0.97316 1.02083 1.69763 1.28320 1.17186 1.38219 0.84816 0.77873 0.78176 0.77124 1.19575 1.18471 1.21161 1.18653 0.83173 0.81481 0.89255 1.90599 1.55312 1.60408 1.44414 1.19831 0.97760 1.03949 0.93627 1.21109 0.96472 0.98400 0.94016 1.20618 0.98822 1.00646 0.95631 1.19060 0.93178 0.93652 0.91227 1.59108 1.35423 1.25850 1.00348 1.23139 0.89674 0.99337 0.99769 1.22838 1.03215 0.89657 0.85689 1.87985 1.43278 1.50460 1.50313 1.22821 0.87212 0.96329 0.94971 1.23058 1.03401 0.92658 0.91723 1.21286 0.98349 1.04130 0.94661 1.20948 0.96813 0.93743 0.95562 0.85127 0.86443 0.91105 0.87354 0.83815 0.87773 0.92107 0.86011 0.91888 0.86207 0.91703 0.92883 0.88045 0.82345 0.85363 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.51 -24.53 18.54 20.01 0.37 -24.16 16 2 C 0.27 12.23 10.61 89.44 0.95 13.18 16 3 C 0.22 9.26 4.76 84.57 0.40 9.66 16 4 N -0.45 -21.80 2.59 -649.15 -1.68 -23.49 16 5 C -0.34 -18.07 9.46 84.09 0.80 -17.28 16 6 H 0.09 5.03 7.26 -2.91 -0.02 5.01 16 7 C 0.00 0.15 5.17 84.95 0.44 0.59 16 8 N -0.90 -44.19 8.39 21.67 0.18 -44.01 16 9 Si 1.00 40.50 29.58 68.60 2.03 42.53 16 10 H -0.27 -11.17 7.11 99.48 0.71 -10.46 16 11 H -0.26 -9.82 7.11 99.48 0.71 -9.11 16 12 H -0.29 -11.76 7.11 99.48 0.71 -11.05 16 13 C 0.48 23.50 7.16 86.66 0.62 24.12 16 14 O -0.62 -35.05 16.65 -4.14 -0.07 -35.12 16 15 C -0.15 -5.60 4.89 -20.08 -0.10 -5.70 16 16 C -0.08 -2.72 7.53 22.40 0.17 -2.55 16 17 C -0.14 -3.65 9.15 22.25 0.20 -3.45 16 18 C 0.13 3.00 5.63 38.47 0.22 3.22 16 19 N -0.49 -9.18 4.75 -694.29 -3.30 -12.48 16 20 C 0.01 0.11 4.32 86.31 0.37 0.48 16 21 C 0.06 0.78 7.01 72.02 0.50 1.29 16 22 O -0.40 -6.56 10.83 -148.98 -1.61 -8.17 16 23 C 0.06 0.84 7.01 72.02 0.50 1.34 16 24 C 0.02 0.26 5.40 86.32 0.47 0.73 16 25 C -0.16 -3.92 8.76 22.25 0.19 -3.72 16 26 C -0.05 -1.59 9.70 22.40 0.22 -1.38 16 27 H 0.13 5.50 6.31 -2.39 -0.02 5.48 16 28 H 0.12 4.00 5.53 -2.39 -0.01 3.99 16 29 H 0.28 13.14 8.31 -92.71 -0.77 12.37 16 30 H 0.11 4.11 4.83 -2.91 -0.01 4.09 16 31 H 0.14 3.25 7.18 -2.91 -0.02 3.23 16 32 H 0.10 1.33 7.20 -2.39 -0.02 1.31 16 33 H 0.06 0.88 7.53 -2.39 -0.02 0.86 16 34 H 0.12 1.01 8.14 -2.39 -0.02 0.99 16 35 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 36 H 0.12 1.13 8.14 -2.39 -0.02 1.11 16 37 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 38 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 39 H 0.10 1.46 6.83 -2.39 -0.02 1.45 16 40 H 0.16 2.77 5.78 -2.91 -0.02 2.75 16 41 H 0.13 3.96 8.06 -2.91 -0.02 3.94 16 Total: -1.00 -68.96 334.73 2.95 -66.01 By element: Atomic # 1 Polarization: 17.28 SS G_CDS: 1.08 Total: 18.36 kcal Atomic # 6 Polarization: 14.57 SS G_CDS: 5.96 Total: 20.53 kcal Atomic # 7 Polarization: -99.71 SS G_CDS: -4.43 Total: -104.14 kcal Atomic # 8 Polarization: -41.61 SS G_CDS: -1.68 Total: -43.29 kcal Atomic # 14 Polarization: 40.50 SS G_CDS: 2.03 Total: 42.53 kcal Total: -68.96 2.95 -66.01 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000355705977.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.773 kcal (2) G-P(sol) polarization free energy of solvation -68.961 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.188 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.952 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.010 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.236 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds