Wall clock time and date at job start Tue Mar 31 2020 11:08:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.37710 * 120.15914 * 2 1 4 4 C 1.38849 * 120.81895 * 180.02562 * 3 2 1 5 5 C 1.37804 * 120.56990 * 359.96084 * 4 3 2 6 6 C 1.39303 * 119.51539 * 0.02562 * 5 4 3 7 7 C 1.39604 * 120.15976 * 180.02562 * 2 1 3 8 8 N 1.35665 * 121.64277 * 0.02562 * 7 2 1 9 9 C 1.29829 * 121.61730 * 179.97438 * 8 7 2 10 10 N 1.35863 * 123.36678 * 359.97438 * 9 8 7 11 11 C 1.46508 * 119.69333 * 180.02562 * 10 9 8 12 12 C 1.52994 * 109.47287 * 269.98032 * 11 10 9 13 13 C 1.50696 * 109.47371 * 180.02562 * 12 11 10 14 14 O 1.21283 * 120.00069 * 359.97438 * 13 12 11 15 15 N 1.34779 * 120.00156 * 180.02562 * 13 12 11 16 16 C 1.46500 * 120.00076 * 179.97438 * 15 13 12 17 17 C 1.50694 * 109.47123 * 179.97438 * 16 15 13 18 18 H 1.08003 * 120.00041 * 0.02562 * 17 16 15 19 19 C 1.37882 * 120.00113 * 180.02562 * 17 16 15 20 20 N 1.31514 * 120.00232 * 180.02562 * 19 17 16 21 21 Si 1.86806 * 119.99690 * 0.02562 * 19 17 16 22 22 H 1.48499 * 109.46982 * 90.00238 * 21 19 17 23 23 H 1.48496 * 109.46793 * 209.99861 * 21 19 17 24 24 H 1.48497 * 109.46974 * 329.99811 * 21 19 17 25 25 C 1.35339 * 120.61087 * 0.02562 * 10 9 8 26 26 O 1.21731 * 121.29465 * 179.97438 * 25 10 9 27 27 H 1.09000 * 109.47096 * 269.99915 * 1 2 3 28 28 H 1.08999 * 109.46902 * 29.99653 * 1 2 3 29 29 H 1.08997 * 109.47208 * 149.99525 * 1 2 3 30 30 H 1.07996 * 119.59150 * 0.02562 * 3 2 1 31 31 H 1.07995 * 119.71426 * 179.97438 * 4 3 2 32 32 H 1.07997 * 120.24424 * 180.02562 * 5 4 3 33 33 H 1.08005 * 118.31683 * 179.97438 * 9 8 7 34 34 H 1.09003 * 109.46885 * 29.98074 * 11 10 9 35 35 H 1.08998 * 109.47011 * 149.97723 * 11 10 9 36 36 H 1.09001 * 109.47085 * 300.00388 * 12 11 10 37 37 H 1.08998 * 109.47347 * 59.99897 * 12 11 10 38 38 H 0.96995 * 119.99940 * 359.97438 * 15 13 12 39 39 H 1.09001 * 109.47572 * 300.00410 * 16 15 13 40 40 H 1.09003 * 109.46394 * 60.00111 * 16 15 13 41 41 H 0.96995 * 119.99734 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1988 1.1907 0.0000 4 6 3.5872 1.2067 -0.0005 5 6 4.3017 0.0283 -0.0003 6 6 3.6209 -1.1870 0.0000 7 6 2.2084 -1.2071 -0.0005 8 7 1.5673 -2.4027 -0.0016 9 6 2.2201 -3.5250 -0.0026 10 7 3.5766 -3.6004 -0.0032 11 6 4.2306 -4.9114 -0.0049 12 6 4.4593 -5.3691 1.4370 13 6 5.1325 -6.7173 1.4353 14 8 5.4025 -7.2590 0.3842 15 7 5.4338 -7.3217 2.6017 16 6 6.0877 -8.6326 2.6000 17 6 6.3130 -9.0834 4.0202 18 1 6.0000 -8.4563 4.8419 19 6 6.9189 -10.2964 4.2706 20 7 7.1150 -10.6901 5.5100 21 14 7.4610 -11.3806 2.8493 22 1 8.8572 -11.0423 2.4732 23 1 7.3904 -12.8061 3.2593 24 1 6.5664 -11.1554 1.6857 25 6 4.3294 -2.4756 -0.0022 26 8 5.5455 -2.5287 -0.0022 27 1 -0.3633 0.0000 1.0277 28 1 -0.3633 0.8900 -0.5138 29 1 -0.3633 -0.8899 -0.5139 30 1 1.6548 2.1236 0.0004 31 1 4.1117 2.1507 -0.0009 32 1 5.3815 0.0469 -0.0003 33 1 1.6558 -4.4459 -0.0030 34 1 3.5960 -5.6333 -0.5190 35 1 5.1888 -4.8387 -0.5193 36 1 5.0938 -4.6472 1.9511 37 1 3.5011 -5.4418 1.9514 38 1 5.2175 -6.8886 3.4423 39 1 5.4535 -9.3545 2.0855 40 1 7.0462 -8.5597 2.0859 41 1 7.5416 -11.5432 5.6861 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000358635920.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:08:34 Heat of formation + Delta-G solvation = -31.024021 kcal Electronic energy + Delta-G solvation = -24776.658329 eV Core-core repulsion = 21042.164441 eV Total energy + Delta-G solvation = -3734.493888 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.137 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.90471 -39.40379 -38.80962 -37.72314 -35.03954 -34.37040 -33.29522 -32.44128 -31.18764 -30.56166 -28.08857 -27.32296 -25.55074 -24.84009 -23.38710 -21.82992 -21.31482 -19.97243 -19.16645 -18.74405 -17.81283 -17.03965 -16.36768 -15.93539 -15.63488 -15.49594 -15.35949 -15.26929 -14.98202 -14.25982 -14.23066 -14.01899 -13.76599 -13.54454 -13.25294 -12.95330 -12.66957 -12.65860 -12.38580 -12.23811 -12.11138 -11.99952 -11.97928 -11.35364 -11.07175 -10.80849 -10.47663 -10.29852 -10.21312 -10.01806 -9.55270 -9.38464 -9.31145 -8.82777 -8.28032 -8.25927 -6.25399 -4.28293 0.22536 0.49122 1.90288 2.13686 2.47580 3.06132 3.24030 3.30734 3.37969 3.62422 3.72012 3.85048 3.93499 4.29526 4.33447 4.45315 4.54955 4.67555 4.73985 4.82934 4.90829 5.09479 5.09935 5.17643 5.24027 5.38443 5.40662 5.43333 5.53903 5.66846 5.79576 5.82742 5.91874 6.03515 6.07798 6.32843 6.47891 6.72956 7.00418 7.10762 7.32396 7.43919 7.56090 8.04286 8.42468 8.67637 8.80479 9.34007 10.86475 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.029537 B = 0.002295 C = 0.002268 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 947.730139 B =12195.425469 C =12343.199761 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C -0.079 4.079 3 C -0.080 4.080 4 C -0.136 4.136 5 C -0.048 4.048 6 C -0.192 4.192 7 C 0.152 3.848 8 N -0.526 5.526 9 C 0.379 3.621 10 N -0.546 5.546 11 C 0.111 3.889 12 C -0.158 4.158 13 C 0.507 3.493 14 O -0.559 6.559 15 N -0.702 5.702 16 C 0.220 3.780 17 C -0.546 4.546 18 H 0.080 0.920 19 C 0.078 3.922 20 N -0.891 5.891 21 Si 0.878 3.122 22 H -0.273 1.273 23 H -0.283 1.283 24 H -0.261 1.261 25 C 0.544 3.456 26 O -0.503 6.503 27 H 0.071 0.929 28 H 0.063 0.937 29 H 0.079 0.921 30 H 0.132 0.868 31 H 0.132 0.868 32 H 0.137 0.863 33 H 0.203 0.797 34 H 0.106 0.894 35 H 0.109 0.891 36 H 0.097 0.903 37 H 0.097 0.903 38 H 0.398 0.602 39 H 0.027 0.973 40 H 0.022 0.978 41 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.990 23.119 -11.456 29.351 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.081 4.081 3 C -0.099 4.099 4 C -0.155 4.155 5 C -0.067 4.067 6 C -0.198 4.198 7 C 0.043 3.957 8 N -0.246 5.246 9 C 0.092 3.908 10 N -0.268 5.268 11 C -0.011 4.011 12 C -0.199 4.199 13 C 0.291 3.709 14 O -0.439 6.439 15 N -0.350 5.350 16 C 0.098 3.902 17 C -0.584 4.584 18 H 0.098 0.902 19 C -0.126 4.126 20 N -0.528 5.528 21 Si 0.704 3.296 22 H -0.198 1.198 23 H -0.209 1.209 24 H -0.185 1.185 25 C 0.337 3.663 26 O -0.377 6.377 27 H 0.089 0.911 28 H 0.082 0.918 29 H 0.097 0.903 30 H 0.150 0.850 31 H 0.150 0.850 32 H 0.155 0.845 33 H 0.219 0.781 34 H 0.125 0.875 35 H 0.127 0.873 36 H 0.115 0.885 37 H 0.115 0.885 38 H 0.232 0.768 39 H 0.045 0.955 40 H 0.040 0.960 41 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -13.746 22.731 -12.070 29.178 hybrid contribution 1.159 -0.487 0.000 1.257 sum -12.588 22.245 -12.070 28.266 Atomic orbital electron populations 1.20645 0.89761 1.03080 1.02603 1.19650 0.96832 0.90448 1.01132 1.21198 0.94221 0.97544 0.96955 1.21162 0.94046 0.98115 1.02155 1.21022 1.00673 0.90445 0.94555 1.20589 0.93935 0.93987 1.11286 1.18630 0.88992 0.91993 0.96134 1.68635 1.35783 0.96428 1.23723 1.24867 0.80410 0.98555 0.86975 1.46784 1.07751 1.09609 1.62667 1.21747 1.01291 0.80523 0.97534 1.21974 1.03058 0.96913 0.97983 1.20129 0.79741 0.86337 0.84696 1.90676 1.55269 1.66657 1.31284 1.46191 1.59463 1.21994 1.07324 1.19526 0.92617 0.79721 0.98365 1.21079 1.41543 1.05265 0.90473 0.90245 1.24807 0.94682 0.97309 0.95849 1.69877 1.42344 1.21812 1.18789 0.86805 0.80009 0.79857 0.82937 1.19820 1.20861 1.18508 1.18464 0.87226 0.83813 0.76780 1.90902 1.12230 1.86471 1.48070 0.91080 0.91786 0.90257 0.85010 0.84992 0.84506 0.78106 0.87531 0.87288 0.88484 0.88513 0.76846 0.95537 0.96045 0.92203 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.71 9.81 36.00 0.35 -0.36 16 2 C -0.08 -0.71 5.91 -104.31 -0.62 -1.32 16 3 C -0.08 -0.59 9.66 -39.55 -0.38 -0.97 16 4 C -0.14 -1.06 10.02 -39.51 -0.40 -1.46 16 5 C -0.05 -0.49 9.68 -39.34 -0.38 -0.87 16 6 C -0.19 -2.28 5.89 -104.78 -0.62 -2.90 16 7 C 0.15 1.65 6.60 -84.51 -0.56 1.09 16 8 N -0.53 -5.26 9.47 -12.01 -0.11 -5.37 16 9 C 0.38 3.19 11.41 -90.18 -1.03 2.17 16 10 N -0.55 -5.79 2.61 -118.86 -0.31 -6.10 16 11 C 0.11 1.24 4.65 -4.04 -0.02 1.22 16 12 C -0.16 -1.91 6.02 -27.89 -0.17 -2.08 16 13 C 0.51 8.83 7.83 -10.99 -0.09 8.74 16 14 O -0.56 -11.64 15.98 5.55 0.09 -11.56 16 15 N -0.70 -13.55 5.55 -61.47 -0.34 -13.89 16 16 C 0.22 5.27 4.50 -5.20 -0.02 5.24 16 17 C -0.55 -14.75 9.83 -34.44 -0.34 -15.09 16 18 H 0.08 2.24 7.84 -52.48 -0.41 1.82 16 19 C 0.08 2.17 5.47 -17.82 -0.10 2.07 16 20 N -0.89 -26.24 13.96 55.43 0.77 -25.47 16 21 Si 0.88 21.18 27.47 -169.99 -4.67 16.51 16 22 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 23 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 24 H -0.26 -6.21 6.54 56.52 0.37 -5.84 16 25 C 0.54 7.19 7.66 -12.44 -0.10 7.09 16 26 O -0.50 -8.13 16.32 5.16 0.08 -8.04 16 27 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.06 0.32 8.09 -51.93 -0.42 -0.10 16 29 H 0.08 0.60 7.57 -51.93 -0.39 0.20 16 30 H 0.13 0.60 8.06 -52.49 -0.42 0.18 16 31 H 0.13 0.68 8.06 -52.49 -0.42 0.26 16 32 H 0.14 1.35 7.83 -52.49 -0.41 0.94 16 33 H 0.20 0.87 7.99 -52.48 -0.42 0.45 16 34 H 0.11 0.98 7.95 -51.93 -0.41 0.57 16 35 H 0.11 1.48 7.42 -51.93 -0.39 1.10 16 36 H 0.10 1.21 8.14 -51.93 -0.42 0.78 16 37 H 0.10 0.90 8.14 -51.93 -0.42 0.48 16 38 H 0.40 6.77 8.32 -40.82 -0.34 6.43 16 39 H 0.03 0.66 7.20 -51.93 -0.37 0.29 16 40 H 0.02 0.54 7.57 -51.93 -0.39 0.15 16 41 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 LS Contribution 353.67 15.07 5.33 5.33 Total: -1.00 -34.78 353.67 -8.85 -43.63 By element: Atomic # 1 Polarization: 7.62 SS G_CDS: -5.24 Total: 2.38 kcal Atomic # 6 Polarization: 7.04 SS G_CDS: -4.45 Total: 2.59 kcal Atomic # 7 Polarization: -50.85 SS G_CDS: 0.01 Total: -50.84 kcal Atomic # 8 Polarization: -19.77 SS G_CDS: 0.17 Total: -19.60 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -4.67 Total: 16.51 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -34.78 -8.85 -43.63 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358635920.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.605 kcal (2) G-P(sol) polarization free energy of solvation -34.779 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.174 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.850 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.629 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.024 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds