Wall clock time and date at job start Tue Mar 31 2020 11:22:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35926 * 116.99966 * 2 1 4 4 C 1.38615 * 120.08243 * 0.27674 * 3 2 1 5 5 C 1.38204 * 120.00659 * 180.29652 * 4 3 2 6 6 C 1.38314 * 120.18415 * 359.72873 * 5 4 3 7 7 C 1.50703 * 119.90691 * 179.97438 * 6 5 4 8 8 C 1.38145 * 120.17837 * 359.97438 * 6 5 4 9 9 C 1.38763 * 119.98585 * 0.02562 * 8 6 5 10 10 N 1.40184 * 120.09317 * 180.02562 * 9 8 6 11 11 C 1.35837 * 124.95449 * 0.02562 * 10 9 8 12 12 C 1.35366 * 107.12905 * 179.97438 * 11 10 9 13 13 C 1.41515 * 105.55927 * 359.97438 * 12 11 10 14 14 C 1.47650 * 126.44608 * 179.73775 * 13 12 11 15 15 O 1.21578 * 120.00210 * 0.02562 * 14 13 12 16 16 N 1.34781 * 119.99702 * 179.97438 * 14 13 12 17 17 C 1.46504 * 119.99622 * 179.97438 * 16 14 13 18 18 C 1.50694 * 109.46858 * 180.02562 * 17 16 14 19 19 H 1.08000 * 120.00251 * 0.02562 * 18 17 16 20 20 C 1.37877 * 120.00051 * 179.97438 * 18 17 16 21 21 N 1.31519 * 119.99784 * 0.02562 * 20 18 17 22 22 Si 1.86794 * 120.00406 * 179.97438 * 20 18 17 23 23 H 1.48504 * 109.47163 * 0.02562 * 22 20 18 24 24 H 1.48500 * 109.47237 * 119.99879 * 22 20 18 25 25 H 1.48506 * 109.47628 * 240.00456 * 22 20 18 26 26 N 1.28470 * 124.95631 * 179.97438 * 10 9 8 27 27 H 1.08997 * 109.47664 * 59.99771 * 1 2 3 28 28 H 1.09000 * 109.46705 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.46818 * 299.99451 * 1 2 3 30 30 H 1.07996 * 119.99763 * 0.02562 * 4 3 2 31 31 H 1.08001 * 119.90375 * 179.74998 * 5 4 3 32 32 H 1.09000 * 109.47105 * 269.97116 * 7 6 5 33 33 H 1.08995 * 109.47325 * 29.98061 * 7 6 5 34 34 H 1.09004 * 109.47212 * 149.98018 * 7 6 5 35 35 H 1.07999 * 120.00895 * 180.02562 * 8 6 5 36 36 H 1.07996 * 126.43417 * 359.95445 * 11 10 9 37 37 H 1.08004 * 127.22273 * 179.97438 * 12 11 10 38 38 H 0.96994 * 119.99995 * 0.02562 * 16 14 13 39 39 H 1.08999 * 109.47218 * 300.00726 * 17 16 14 40 40 H 1.08999 * 109.46506 * 60.00443 * 17 16 14 41 41 H 0.97003 * 119.99805 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2111 0.0000 4 6 1.2928 2.3747 0.0058 5 6 1.9219 3.6053 -0.0004 6 6 3.3030 3.6803 -0.0067 7 6 3.9824 5.0255 -0.0141 8 6 4.0612 2.5255 -0.0064 9 6 3.4371 1.2862 -0.0002 10 7 4.2043 0.1129 0.0008 11 6 5.5621 0.0709 -0.0035 12 6 5.9205 -1.2345 -0.0003 13 6 4.7064 -1.9615 0.0068 14 6 4.5641 -3.4311 0.0070 15 8 5.5535 -4.1377 0.0012 16 7 3.3373 -3.9893 0.0147 17 6 3.1961 -5.4475 0.0144 18 6 1.7336 -5.8105 0.0232 19 1 0.9842 -5.0328 0.0281 20 6 1.3521 -7.1355 0.0239 21 7 2.2647 -8.0825 0.0174 22 14 -0.4608 -7.5855 0.0356 23 1 -1.2786 -6.3459 0.0422 24 1 -0.7808 -8.3824 -1.1759 25 1 -0.7645 -8.3858 1.2491 26 7 3.7260 -1.0794 0.0068 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8901 30 1 0.2143 2.3197 0.0107 31 1 1.3333 4.5108 0.0000 32 1 4.1421 5.3463 -1.0435 33 1 3.3539 5.7528 0.4999 34 1 4.9427 4.9503 0.4961 35 1 5.1394 2.5873 -0.0109 36 1 6.2300 0.9195 -0.0089 37 1 6.9228 -1.6367 -0.0026 38 1 2.5480 -3.4256 0.0197 39 1 3.6667 -5.8579 -0.8791 40 1 3.6784 -5.8594 0.9008 41 1 1.9963 -9.0147 0.0176 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000359139832.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:22:03 Heat of formation + Delta-G solvation = 38.125069 kcal Electronic energy + Delta-G solvation = -25339.013993 eV Core-core repulsion = 21607.518635 eV Total energy + Delta-G solvation = -3731.495358 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.137 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.71778 -40.32538 -38.35711 -37.95018 -34.11048 -33.97364 -32.28562 -32.09886 -30.73674 -29.72104 -28.07402 -27.21264 -26.23543 -24.44301 -23.27318 -22.08598 -20.93702 -20.86591 -19.32657 -18.70921 -17.68394 -17.05291 -16.32186 -16.30616 -15.68927 -15.50565 -15.02385 -14.85686 -14.75009 -14.15880 -14.14757 -14.08676 -13.89625 -13.57413 -13.28680 -12.60045 -12.55463 -12.53230 -12.38056 -11.90054 -11.87883 -11.73977 -11.37572 -11.13321 -10.91501 -10.87466 -10.58139 -10.27271 -10.14110 -9.31604 -9.22498 -9.10037 -8.88398 -8.67009 -8.02066 -7.73809 -6.10265 -4.15958 0.54295 0.94038 2.12440 2.36874 2.40343 3.04898 3.27504 3.33910 3.34017 3.37540 4.09462 4.13171 4.19953 4.39663 4.42810 4.53634 4.65852 4.76118 4.94628 4.96038 5.02911 5.04148 5.15388 5.22156 5.25892 5.34295 5.47679 5.51296 5.62617 5.70297 5.81303 5.87178 5.95743 6.10228 6.25632 6.58915 6.85331 7.20967 7.39017 7.52246 7.59857 7.74835 8.02766 8.09559 8.75010 8.86155 9.18207 9.49897 11.00243 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.016631 B = 0.003314 C = 0.002771 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1683.235827 B = 8446.149373 C =10103.617618 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.276 6.276 3 C 0.136 3.864 4 C -0.190 4.190 5 C -0.082 4.082 6 C -0.106 4.106 7 C -0.108 4.108 8 C -0.093 4.093 9 C 0.111 3.889 10 N -0.235 5.235 11 C -0.034 4.034 12 C -0.169 4.169 13 C -0.002 4.002 14 C 0.585 3.415 15 O -0.549 6.549 16 N -0.694 5.694 17 C 0.248 3.752 18 C -0.538 4.538 19 H 0.064 0.936 20 C 0.063 3.937 21 N -0.886 5.886 22 Si 0.904 3.096 23 H -0.272 1.272 24 H -0.282 1.282 25 H -0.282 1.282 26 N -0.232 5.232 27 H 0.054 0.946 28 H 0.109 0.891 29 H 0.054 0.946 30 H 0.139 0.861 31 H 0.131 0.869 32 H 0.071 0.929 33 H 0.068 0.932 34 H 0.067 0.933 35 H 0.139 0.861 36 H 0.180 0.820 37 H 0.166 0.834 38 H 0.398 0.602 39 H 0.030 0.970 40 H 0.030 0.970 41 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.542 28.875 -0.076 28.881 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.187 6.187 3 C 0.087 3.913 4 C -0.209 4.209 5 C -0.100 4.100 6 C -0.107 4.107 7 C -0.165 4.165 8 C -0.113 4.113 9 C 0.019 3.981 10 N -0.017 5.017 11 C -0.172 4.172 12 C -0.197 4.197 13 C -0.164 4.164 14 C 0.367 3.633 15 O -0.427 6.427 16 N -0.342 5.342 17 C 0.127 3.873 18 C -0.577 4.577 19 H 0.082 0.918 20 C -0.141 4.141 21 N -0.524 5.524 22 Si 0.731 3.269 23 H -0.197 1.197 24 H -0.208 1.208 25 H -0.208 1.208 26 N -0.065 5.065 27 H 0.073 0.927 28 H 0.127 0.873 29 H 0.073 0.927 30 H 0.157 0.843 31 H 0.149 0.851 32 H 0.090 0.910 33 H 0.087 0.913 34 H 0.086 0.914 35 H 0.157 0.843 36 H 0.197 0.803 37 H 0.183 0.817 38 H 0.232 0.768 39 H 0.047 0.953 40 H 0.048 0.952 41 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -0.953 28.026 -0.075 28.042 hybrid contribution -0.698 0.004 -0.001 0.698 sum -1.651 28.029 -0.076 28.078 Atomic orbital electron populations 1.23204 0.78322 1.05001 1.00818 1.86494 1.21036 1.24195 1.86995 1.18701 0.89999 0.86163 0.96446 1.21196 1.00500 0.91418 1.07781 1.20925 0.93862 0.97260 0.97971 1.19575 0.93416 0.94905 1.02835 1.20724 1.00466 0.92783 1.02527 1.20543 1.00429 0.88898 1.01476 1.16975 0.87488 0.83805 1.09826 1.42602 1.04449 1.03622 1.51015 1.22896 0.84364 0.99673 1.10295 1.21831 0.99769 0.91091 1.06958 1.22595 0.90597 0.95033 1.08186 1.16914 0.84596 0.83699 0.78093 1.90747 1.38082 1.61614 1.52225 1.46368 1.06360 1.10887 1.70566 1.19180 0.97084 0.73066 0.97937 1.21264 0.91274 0.92444 1.52695 0.91801 1.24947 0.98166 0.96123 0.94839 1.69992 1.32979 1.00164 1.49256 0.86362 0.84364 0.78498 0.77677 1.19664 1.20847 1.20839 1.73926 1.25949 0.88752 1.17848 0.92711 0.87302 0.92715 0.84291 0.85120 0.91040 0.91304 0.91376 0.84317 0.80259 0.81675 0.76798 0.95252 0.95241 0.92567 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.21 9.81 101.05 0.99 1.20 16 2 O -0.28 -3.87 8.54 -19.51 -0.17 -4.04 16 3 C 0.14 1.68 6.69 -39.05 -0.26 1.42 16 4 C -0.19 -1.71 9.04 -39.45 -0.36 -2.06 16 5 C -0.08 -0.60 9.69 -39.57 -0.38 -0.99 16 6 C -0.11 -0.80 5.88 -104.63 -0.62 -1.41 16 7 C -0.11 -0.50 10.01 36.01 0.36 -0.14 16 8 C -0.09 -0.85 9.08 -39.42 -0.36 -1.21 16 9 C 0.11 1.41 6.67 -83.45 -0.56 0.85 16 10 N -0.23 -3.55 3.52 -10.45 -0.04 -3.59 16 11 C -0.03 -0.44 10.78 -16.80 -0.18 -0.62 16 12 C -0.17 -2.68 10.80 -39.36 -0.42 -3.11 16 13 C 0.00 -0.04 7.13 -82.75 -0.59 -0.62 16 14 C 0.58 13.65 7.82 -12.42 -0.10 13.55 16 15 O -0.55 -14.36 16.92 5.30 0.09 -14.27 16 16 N -0.69 -16.68 5.55 -62.49 -0.35 -17.02 16 17 C 0.25 6.94 5.43 -5.19 -0.03 6.91 16 18 C -0.54 -15.20 9.28 -34.44 -0.32 -15.52 16 19 H 0.06 1.71 7.60 -52.49 -0.40 1.31 16 20 C 0.06 1.78 5.46 -17.82 -0.10 1.68 16 21 N -0.89 -26.65 13.29 55.43 0.74 -25.92 16 22 Si 0.90 21.31 29.54 -169.99 -5.02 16.29 16 23 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 24 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 25 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 26 N -0.23 -4.25 9.64 33.42 0.32 -3.92 16 27 H 0.05 0.43 7.68 -51.93 -0.40 0.03 16 28 H 0.11 1.05 8.14 -51.93 -0.42 0.63 16 29 H 0.05 0.43 7.65 -51.93 -0.40 0.03 16 30 H 0.14 0.94 6.30 -52.49 -0.33 0.61 16 31 H 0.13 0.62 8.06 -52.49 -0.42 0.19 16 32 H 0.07 0.29 8.14 -51.93 -0.42 -0.14 16 33 H 0.07 0.25 8.08 -51.93 -0.42 -0.17 16 34 H 0.07 0.27 8.08 -51.93 -0.42 -0.15 16 35 H 0.14 0.93 6.65 -52.49 -0.35 0.58 16 36 H 0.18 1.45 6.96 -52.49 -0.37 1.08 16 37 H 0.17 2.35 8.06 -52.48 -0.42 1.92 16 38 H 0.40 8.86 8.04 -40.82 -0.33 8.54 16 39 H 0.03 0.89 8.14 -51.93 -0.42 0.47 16 40 H 0.03 0.90 8.14 -51.93 -0.42 0.47 16 41 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 LS Contribution 355.89 15.07 5.36 5.36 Total: -1.00 -35.81 355.89 -7.05 -42.86 By element: Atomic # 1 Polarization: 9.39 SS G_CDS: -5.08 Total: 4.31 kcal Atomic # 6 Polarization: 2.85 SS G_CDS: -2.92 Total: -0.07 kcal Atomic # 7 Polarization: -51.13 SS G_CDS: 0.68 Total: -50.45 kcal Atomic # 8 Polarization: -18.23 SS G_CDS: -0.08 Total: -18.31 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.29 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -35.81 -7.05 -42.86 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359139832.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.989 kcal (2) G-P(sol) polarization free energy of solvation -35.809 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.180 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.055 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.864 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.125 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds