Wall clock time and date at job start Tue Mar 31 2020 11:22:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35926 * 116.99966 * 2 1 4 4 C 1.38615 * 120.08243 * 0.27674 * 3 2 1 5 5 C 1.38204 * 120.00659 * 180.29652 * 4 3 2 6 6 C 1.38314 * 120.18415 * 359.72873 * 5 4 3 7 7 C 1.50703 * 119.90691 * 179.97438 * 6 5 4 8 8 C 1.38145 * 120.17837 * 359.97438 * 6 5 4 9 9 C 1.38763 * 119.98585 * 0.02562 * 8 6 5 10 10 N 1.40184 * 120.09317 * 180.02562 * 9 8 6 11 11 C 1.35837 * 124.95449 * 0.02562 * 10 9 8 12 12 C 1.35366 * 107.12905 * 179.97438 * 11 10 9 13 13 C 1.41515 * 105.55927 * 359.97438 * 12 11 10 14 14 C 1.47650 * 126.44608 * 179.73775 * 13 12 11 15 15 O 1.21578 * 120.00210 * 0.02562 * 14 13 12 16 16 N 1.34781 * 119.99702 * 179.97438 * 14 13 12 17 17 C 1.46504 * 119.99622 * 179.97438 * 16 14 13 18 18 C 1.50694 * 109.46858 * 180.02562 * 17 16 14 19 19 H 1.08000 * 120.00251 * 0.02562 * 18 17 16 20 20 C 1.37877 * 120.00051 * 179.97438 * 18 17 16 21 21 N 1.31519 * 119.99784 * 0.02562 * 20 18 17 22 22 Si 1.86794 * 120.00406 * 179.97438 * 20 18 17 23 23 H 1.48504 * 109.47163 * 0.02562 * 22 20 18 24 24 H 1.48500 * 109.47237 * 119.99879 * 22 20 18 25 25 H 1.48506 * 109.47628 * 240.00456 * 22 20 18 26 26 N 1.28470 * 124.95631 * 179.97438 * 10 9 8 27 27 H 1.08997 * 109.47664 * 59.99771 * 1 2 3 28 28 H 1.09000 * 109.46705 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.46818 * 299.99451 * 1 2 3 30 30 H 1.07996 * 119.99763 * 0.02562 * 4 3 2 31 31 H 1.08001 * 119.90375 * 179.74998 * 5 4 3 32 32 H 1.09000 * 109.47105 * 269.97116 * 7 6 5 33 33 H 1.08995 * 109.47325 * 29.98061 * 7 6 5 34 34 H 1.09004 * 109.47212 * 149.98018 * 7 6 5 35 35 H 1.07999 * 120.00895 * 180.02562 * 8 6 5 36 36 H 1.07996 * 126.43417 * 359.95445 * 11 10 9 37 37 H 1.08004 * 127.22273 * 179.97438 * 12 11 10 38 38 H 0.96994 * 119.99995 * 0.02562 * 16 14 13 39 39 H 1.08999 * 109.47218 * 300.00726 * 17 16 14 40 40 H 1.08999 * 109.46506 * 60.00443 * 17 16 14 41 41 H 0.97003 * 119.99805 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2111 0.0000 4 6 1.2928 2.3747 0.0058 5 6 1.9219 3.6053 -0.0004 6 6 3.3030 3.6803 -0.0067 7 6 3.9824 5.0255 -0.0141 8 6 4.0612 2.5255 -0.0064 9 6 3.4371 1.2862 -0.0002 10 7 4.2043 0.1129 0.0008 11 6 5.5621 0.0709 -0.0035 12 6 5.9205 -1.2345 -0.0003 13 6 4.7064 -1.9615 0.0068 14 6 4.5641 -3.4311 0.0070 15 8 5.5535 -4.1377 0.0012 16 7 3.3373 -3.9893 0.0147 17 6 3.1961 -5.4475 0.0144 18 6 1.7336 -5.8105 0.0232 19 1 0.9842 -5.0328 0.0281 20 6 1.3521 -7.1355 0.0239 21 7 2.2647 -8.0825 0.0174 22 14 -0.4608 -7.5855 0.0356 23 1 -1.2786 -6.3459 0.0422 24 1 -0.7808 -8.3824 -1.1759 25 1 -0.7645 -8.3858 1.2491 26 7 3.7260 -1.0794 0.0068 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8901 30 1 0.2143 2.3197 0.0107 31 1 1.3333 4.5108 0.0000 32 1 4.1421 5.3463 -1.0435 33 1 3.3539 5.7528 0.4999 34 1 4.9427 4.9503 0.4961 35 1 5.1394 2.5873 -0.0109 36 1 6.2300 0.9195 -0.0089 37 1 6.9228 -1.6367 -0.0026 38 1 2.5480 -3.4256 0.0197 39 1 3.6667 -5.8579 -0.8791 40 1 3.6784 -5.8594 0.9008 41 1 1.9963 -9.0147 0.0176 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000359139832.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:22:02 Heat of formation + Delta-G solvation = 13.076996 kcal Electronic energy + Delta-G solvation = -25340.100159 eV Core-core repulsion = 21607.518635 eV Total energy + Delta-G solvation = -3732.581524 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.137 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -43.89578 -41.14385 -40.23099 -38.72055 -36.21117 -34.98612 -34.35005 -32.78573 -31.88934 -30.84606 -29.28779 -28.70453 -26.83702 -25.95665 -24.52630 -23.63279 -22.07470 -21.86529 -20.98534 -19.65421 -19.09502 -18.26087 -17.67411 -17.37506 -17.09883 -16.97349 -16.53712 -16.11269 -15.88937 -15.57293 -15.44895 -14.88905 -14.83632 -14.53095 -14.48703 -14.11340 -13.97980 -13.92161 -13.17306 -13.08988 -12.93979 -12.86160 -12.76204 -12.50340 -12.25652 -12.09099 -11.84231 -11.81609 -11.49345 -11.17409 -11.15093 -10.83678 -10.28060 -9.93686 -9.64438 -8.86799 -8.30589 -6.47326 -0.28826 0.26506 0.73959 1.28673 1.36628 1.41079 1.43261 1.56770 2.29400 2.31625 2.38295 2.52522 2.64215 3.03711 3.20908 3.71605 3.78280 3.85861 4.03188 4.12899 4.25058 4.31905 4.33854 4.37187 4.57339 4.66686 4.69325 4.75012 4.86309 4.95489 4.97351 5.04816 5.19609 5.19738 5.24832 5.34468 5.42299 5.52422 5.62946 5.69609 5.80651 5.89938 6.41249 6.60012 6.67728 6.95431 7.17975 7.33639 8.82182 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.016631 B = 0.003314 C = 0.002771 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1683.235827 B = 8446.149373 C =10103.617618 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.316 6.316 3 C 0.109 3.891 4 C -0.191 4.191 5 C -0.071 4.071 6 C -0.103 4.103 7 C -0.108 4.108 8 C -0.086 4.086 9 C 0.064 3.936 10 N -0.225 5.225 11 C -0.007 4.007 12 C -0.186 4.186 13 C -0.044 4.044 14 C 0.585 3.415 15 O -0.587 6.587 16 N -0.694 5.694 17 C 0.266 3.734 18 C -0.557 4.557 19 H 0.078 0.922 20 C 0.005 3.995 21 N -0.929 5.929 22 Si 0.988 3.012 23 H -0.255 1.255 24 H -0.276 1.276 25 H -0.275 1.275 26 N -0.249 5.249 27 H 0.072 0.928 28 H 0.100 0.900 29 H 0.072 0.928 30 H 0.158 0.842 31 H 0.164 0.836 32 H 0.081 0.919 33 H 0.082 0.918 34 H 0.077 0.923 35 H 0.165 0.835 36 H 0.236 0.764 37 H 0.175 0.825 38 H 0.407 0.593 39 H -0.006 1.006 40 H -0.006 1.006 41 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.014 33.349 -0.066 33.409 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.228 6.228 3 C 0.061 3.939 4 C -0.210 4.210 5 C -0.089 4.089 6 C -0.104 4.104 7 C -0.164 4.164 8 C -0.106 4.106 9 C -0.027 4.027 10 N -0.008 5.008 11 C -0.146 4.146 12 C -0.213 4.213 13 C -0.203 4.203 14 C 0.370 3.630 15 O -0.468 6.468 16 N -0.342 5.342 17 C 0.143 3.857 18 C -0.594 4.594 19 H 0.096 0.904 20 C -0.194 4.194 21 N -0.567 5.567 22 Si 0.810 3.190 23 H -0.179 1.179 24 H -0.201 1.201 25 H -0.201 1.201 26 N -0.084 5.084 27 H 0.090 0.910 28 H 0.118 0.882 29 H 0.090 0.910 30 H 0.176 0.824 31 H 0.182 0.818 32 H 0.100 0.900 33 H 0.101 0.899 34 H 0.096 0.904 35 H 0.182 0.818 36 H 0.252 0.748 37 H 0.192 0.808 38 H 0.242 0.758 39 H 0.012 0.988 40 H 0.012 0.988 41 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -2.436 32.547 -0.065 32.638 hybrid contribution -0.246 -1.101 -0.006 1.128 sum -2.682 31.446 -0.071 31.560 Atomic orbital electron populations 1.23349 0.76897 1.05053 1.02518 1.86422 1.22881 1.25904 1.87597 1.19119 0.90455 0.86644 0.97693 1.21479 1.01433 0.90943 1.07168 1.21414 0.94359 0.97748 0.95398 1.20018 0.93632 0.95726 1.01029 1.20810 1.00965 0.91083 1.03541 1.20925 1.01922 0.87820 0.99912 1.17556 0.87901 0.83806 1.13420 1.42916 1.05646 1.03395 1.48868 1.23613 0.83957 1.00029 1.06987 1.22044 0.99101 0.92066 1.08137 1.22028 0.92902 0.92901 1.12464 1.17440 0.83500 0.85677 0.76376 1.90695 1.39009 1.63315 1.53743 1.46149 1.07390 1.09301 1.71339 1.18683 0.97104 0.75267 0.94599 1.21569 0.91201 0.93405 1.53267 0.90388 1.26079 1.03978 0.95732 0.93662 1.70145 1.35969 1.00844 1.49751 0.85072 0.77276 0.78705 0.77917 1.17851 1.20099 1.20092 1.73847 1.26131 0.90010 1.18433 0.90954 0.88203 0.90956 0.82429 0.81811 0.90014 0.89863 0.90383 0.81764 0.74790 0.80774 0.75780 0.98802 0.98788 0.92081 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.31 9.81 113.37 1.11 1.42 16 2 O -0.32 -8.99 8.54 -92.71 -0.79 -9.78 16 3 C 0.11 2.59 6.69 22.62 0.15 2.74 16 4 C -0.19 -2.94 9.04 22.35 0.20 -2.74 16 5 C -0.07 -0.75 9.69 22.28 0.22 -0.54 16 6 C -0.10 -1.10 5.88 -19.87 -0.12 -1.21 16 7 C -0.11 -0.45 10.01 71.24 0.71 0.26 16 8 C -0.09 -1.26 9.08 22.37 0.20 -1.05 16 9 C 0.06 1.51 6.67 38.19 0.25 1.77 16 10 N -0.23 -6.64 3.52 -186.99 -0.66 -7.30 16 11 C -0.01 -0.16 10.78 83.41 0.90 0.74 16 12 C -0.19 -5.93 10.80 22.41 0.24 -5.69 16 13 C -0.04 -1.79 7.13 42.43 0.30 -1.49 16 14 C 0.58 29.33 7.82 86.73 0.68 30.00 16 15 O -0.59 -33.10 16.92 -3.96 -0.07 -33.16 16 16 N -0.69 -35.77 5.55 -469.89 -2.61 -38.38 16 17 C 0.27 15.98 5.43 85.63 0.46 16.44 16 18 C -0.56 -32.60 9.28 25.60 0.24 -32.37 16 19 H 0.08 4.24 7.60 -2.91 -0.02 4.22 16 20 C 0.01 0.30 5.46 84.65 0.46 0.76 16 21 N -0.93 -57.84 13.29 21.45 0.28 -57.55 16 22 Si 0.99 44.05 29.54 68.60 2.03 46.07 16 23 H -0.26 -10.58 7.11 99.48 0.71 -9.88 16 24 H -0.28 -11.94 7.11 99.48 0.71 -11.23 16 25 H -0.28 -11.93 7.11 99.48 0.71 -11.23 16 26 N -0.25 -9.39 9.64 -48.17 -0.46 -9.86 16 27 H 0.07 1.06 7.68 -2.39 -0.02 1.04 16 28 H 0.10 2.00 8.14 -2.39 -0.02 1.98 16 29 H 0.07 1.06 7.65 -2.39 -0.02 1.04 16 30 H 0.16 1.69 6.30 -2.91 -0.02 1.67 16 31 H 0.16 0.65 8.06 -2.91 -0.02 0.62 16 32 H 0.08 0.24 8.14 -2.39 -0.02 0.22 16 33 H 0.08 0.16 8.08 -2.39 -0.02 0.14 16 34 H 0.08 0.22 8.08 -2.38 -0.02 0.20 16 35 H 0.16 1.40 6.65 -2.91 -0.02 1.38 16 36 H 0.24 2.67 6.96 -2.91 -0.02 2.65 16 37 H 0.17 5.02 8.06 -2.91 -0.02 5.00 16 38 H 0.41 19.32 8.04 -92.71 -0.75 18.58 16 39 H -0.01 -0.39 8.14 -2.39 -0.02 -0.41 16 40 H -0.01 -0.38 8.14 -2.39 -0.02 -0.40 16 41 H 0.27 15.55 8.31 -92.71 -0.77 14.78 16 Total: -1.00 -84.61 355.89 4.07 -80.54 By element: Atomic # 1 Polarization: 20.05 SS G_CDS: 0.32 Total: 20.37 kcal Atomic # 6 Polarization: 3.03 SS G_CDS: 6.02 Total: 9.05 kcal Atomic # 7 Polarization: -109.65 SS G_CDS: -3.44 Total: -113.09 kcal Atomic # 8 Polarization: -42.09 SS G_CDS: -0.86 Total: -42.94 kcal Atomic # 14 Polarization: 44.05 SS G_CDS: 2.03 Total: 46.07 kcal Total: -84.61 4.07 -80.54 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359139832.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.620 kcal (2) G-P(sol) polarization free energy of solvation -84.615 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.005 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.072 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.543 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.077 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds