Wall clock time and date at job start Tue Mar 31 2020 10:55:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86806 * 119.99563 * 2 1 4 4 H 1.48504 * 109.46991 * 269.99964 * 3 2 1 5 5 H 1.48504 * 109.47101 * 29.99837 * 3 2 1 6 6 H 1.48494 * 109.47120 * 150.00207 * 3 2 1 7 7 C 1.37872 * 120.00245 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00002 * 359.97438 * 7 2 1 9 9 C 1.50703 * 119.99957 * 179.97438 * 7 2 1 10 10 C 1.52993 * 109.47098 * 179.97438 * 9 7 2 11 11 C 1.50703 * 109.47098 * 179.97438 * 10 9 7 12 12 N 1.30979 * 126.44621 * 90.27149 * 11 10 9 13 13 C 1.35192 * 105.57852 * 180.12981 * 12 11 10 14 14 C 1.48500 * 126.40617 * 179.87609 * 13 12 11 15 15 C 1.39860 * 120.87247 * 359.73854 * 14 13 12 16 16 C 1.37886 * 119.15410 * 179.97438 * 15 14 13 17 17 N 1.31975 * 120.95645 * 359.72254 * 16 15 14 18 18 C 1.32262 * 121.91975 * 0.56757 * 17 16 15 19 19 O 1.35683 * 119.63273 * 179.70594 * 18 17 16 20 20 C 1.42905 * 116.99750 * 359.73194 * 19 18 17 21 21 C 1.53781 * 113.61093 * 247.49403 * 20 19 18 22 22 C 1.53777 * 87.07977 * 220.01856 * 21 20 19 23 23 C 1.53780 * 87.08217 * 25.43602 * 22 21 20 24 24 C 1.38769 * 120.73607 * 359.43684 * 18 17 16 25 25 N 1.30717 * 107.18471 * 359.61921 * 13 12 11 26 26 O 1.21286 * 110.10596 * 0.23647 * 25 13 12 27 27 H 0.96995 * 120.00662 * 359.97438 * 1 2 3 28 28 H 1.09000 * 109.47344 * 59.99674 * 9 7 2 29 29 H 1.09001 * 109.47077 * 300.00140 * 9 7 2 30 30 H 1.09007 * 109.47510 * 59.99998 * 10 9 7 31 31 H 1.09001 * 109.47294 * 300.00036 * 10 9 7 32 32 H 1.07995 * 120.42348 * 0.02562 * 15 14 13 33 33 H 1.08002 * 119.52026 * 179.97438 * 16 15 14 34 34 H 1.08993 * 112.85007 * 18.79957 * 20 19 18 35 35 H 1.08993 * 113.61733 * 334.56970 * 21 20 19 36 36 H 1.09001 * 113.61258 * 105.47714 * 21 20 19 37 37 H 1.09001 * 113.62025 * 270.88491 * 22 21 20 38 38 H 1.09002 * 113.61262 * 139.98379 * 22 21 20 39 39 H 1.09000 * 113.61269 * 220.01900 * 23 22 21 40 40 H 1.08997 * 113.69385 * 89.12846 * 23 22 21 41 41 H 1.08001 * 120.51642 * 180.29967 * 24 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6179 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4464 2.6528 0.7000 6 1 3.5466 1.4404 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5116 -1.1939 -0.0011 10 6 4.0216 -2.6363 -0.0010 11 6 5.5286 -2.6362 -0.0022 12 7 6.3076 -2.6408 1.0508 13 6 7.5704 -2.6357 0.5682 14 6 8.8204 -2.6353 1.3700 15 6 8.7762 -2.6351 2.7679 16 6 9.9586 -2.6354 3.4773 17 7 11.1230 -2.6412 2.8561 18 6 11.2116 -2.6360 1.5364 19 8 12.4332 -2.6364 0.9460 20 6 13.5714 -2.6366 1.8102 21 6 14.3884 -1.3351 1.7530 22 6 15.6476 -2.2150 1.8247 23 6 14.7997 -3.3415 1.2109 24 6 10.0690 -2.6358 0.7489 25 7 7.4854 -2.6367 -0.7362 26 8 6.3218 -2.6371 -1.0782 27 1 -0.4851 0.8399 0.0004 28 1 3.8753 -0.6802 0.8888 29 1 3.8745 -0.6798 -0.8911 30 1 3.6580 -3.1505 -0.8908 31 1 3.6587 -3.1500 0.8892 32 1 7.8282 -2.6357 3.2851 33 1 9.9315 -2.6348 4.5570 34 1 13.3334 -2.9601 2.8235 35 1 14.2855 -0.7960 0.8114 36 1 14.2525 -0.6956 2.6252 37 1 15.9782 -2.4222 2.8425 38 1 16.4557 -1.8744 1.1773 39 1 14.9958 -4.3218 1.6454 40 1 14.8085 -3.3523 0.1211 41 1 10.1455 -2.6364 -0.3284 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000361262339.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:55:01 Heat of formation + Delta-G solvation = 82.375847 kcal Electronic energy + Delta-G solvation = -24385.043542 eV Core-core repulsion = 20655.467042 eV Total energy + Delta-G solvation = -3729.576500 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.137 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -45.40927 -40.99071 -39.36047 -36.84327 -35.89550 -34.85990 -33.10885 -32.04616 -30.79814 -30.43899 -26.35629 -26.15313 -26.10465 -24.85113 -23.95604 -22.75116 -21.81640 -20.71401 -19.96258 -18.84268 -17.92881 -17.56507 -17.03525 -16.52204 -16.17666 -15.94313 -15.59350 -15.21455 -14.93399 -14.44149 -14.12282 -14.03653 -13.61883 -13.38779 -12.90010 -12.85167 -12.81536 -12.39846 -12.21551 -12.16211 -11.91432 -11.82665 -11.64378 -11.14847 -10.99187 -10.88277 -10.85035 -10.65131 -10.27949 -10.07439 -9.97046 -9.93203 -9.41694 -9.32696 -8.77001 -8.66509 -6.17011 -4.18094 0.40447 0.90632 1.47828 2.49116 2.64604 3.03425 3.24403 3.32693 3.35866 3.45575 3.54377 3.95739 4.02245 4.13691 4.14199 4.34749 4.41193 4.49499 4.71098 4.79270 4.94113 5.03230 5.16659 5.18895 5.25591 5.30933 5.38841 5.43526 5.48317 5.51114 5.65804 5.75647 5.76233 5.83294 5.95037 6.02118 6.10207 6.16639 6.36643 6.95863 6.99347 7.08956 7.52460 7.56835 8.23604 8.34153 8.84770 9.43370 10.95442 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.026200 B = 0.002244 C = 0.002206 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1068.432096 B =12476.100579 C =12689.424700 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.073 3.927 3 Si 0.876 3.124 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.266 1.266 7 C -0.526 4.526 8 H 0.079 0.921 9 C -0.008 4.008 10 C -0.020 4.020 11 C 0.217 3.783 12 N -0.481 5.481 13 C 0.194 3.806 14 C 0.072 3.928 15 C -0.170 4.170 16 C 0.141 3.859 17 N -0.535 5.535 18 C 0.324 3.676 19 O -0.292 6.292 20 C 0.060 3.940 21 C -0.153 4.153 22 C -0.139 4.139 23 C -0.137 4.137 24 C -0.162 4.162 25 N -0.375 5.375 26 O 0.082 5.918 27 H 0.266 0.734 28 H 0.027 0.973 29 H 0.020 0.980 30 H 0.100 0.900 31 H 0.109 0.891 32 H 0.153 0.847 33 H 0.168 0.832 34 H 0.118 0.882 35 H 0.089 0.911 36 H 0.074 0.926 37 H 0.085 0.915 38 H 0.077 0.923 39 H 0.075 0.925 40 H 0.092 0.908 41 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 27.277 -6.382 5.070 28.468 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.129 4.129 3 Si 0.703 3.297 4 H -0.201 1.201 5 H -0.211 1.211 6 H -0.190 1.190 7 C -0.564 4.564 8 H 0.097 0.903 9 C -0.047 4.047 10 C -0.059 4.059 11 C -0.002 4.002 12 N -0.213 5.213 13 C -0.076 4.076 14 C 0.063 3.937 15 C -0.192 4.192 16 C -0.014 4.014 17 N -0.259 5.259 18 C 0.146 3.854 19 O -0.199 6.199 20 C 0.004 3.996 21 C -0.190 4.190 22 C -0.176 4.176 23 C -0.175 4.175 24 C -0.184 4.184 25 N -0.082 5.082 26 O 0.021 5.979 27 H 0.076 0.924 28 H 0.045 0.955 29 H 0.038 0.962 30 H 0.118 0.882 31 H 0.127 0.873 32 H 0.170 0.830 33 H 0.186 0.814 34 H 0.136 0.864 35 H 0.108 0.892 36 H 0.092 0.908 37 H 0.104 0.896 38 H 0.096 0.904 39 H 0.094 0.906 40 H 0.110 0.890 41 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 28.750 -6.286 5.169 29.879 hybrid contribution -0.561 1.014 -0.399 1.225 sum 28.189 -5.272 4.769 29.071 Atomic orbital electron populations 1.69881 1.06225 1.27201 1.50034 1.24942 0.94723 0.99090 0.94170 0.86839 0.80417 0.83733 0.78732 1.20061 1.21093 1.19047 1.20904 0.88249 0.94984 1.52286 0.90305 1.19637 0.98019 0.89419 0.97584 1.20619 0.76589 1.03204 1.05527 1.29687 0.99522 0.91720 0.79305 1.72027 0.98889 1.21587 1.28830 1.23588 0.92919 1.03347 0.87775 1.17332 0.87477 0.96817 0.92083 1.22110 1.01212 1.03123 0.92722 1.22369 0.85651 0.93063 1.00287 1.67145 1.30595 1.18818 1.09367 1.19480 0.85938 0.92234 0.87786 1.86354 1.11442 1.86965 1.35149 1.24205 0.81796 0.97770 0.95822 1.23452 0.95324 0.96957 1.03297 1.22627 0.96594 0.96720 1.01683 1.23275 0.93545 0.98650 1.02006 1.20985 0.89055 1.06539 1.01865 1.74834 0.98224 1.20415 1.14743 1.85297 1.11037 1.65362 1.36231 0.92434 0.95517 0.96201 0.88193 0.87324 0.82960 0.81450 0.86432 0.89197 0.90755 0.89641 0.90393 0.90582 0.88986 0.83394 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.34 13.96 55.43 0.77 -25.57 16 2 C 0.07 2.03 5.47 -17.82 -0.10 1.93 16 3 Si 0.88 20.94 27.47 -169.99 -4.67 16.27 16 4 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 5 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 6 H -0.27 -6.20 6.54 56.52 0.37 -5.83 16 7 C -0.53 -13.85 9.66 -34.44 -0.33 -14.18 16 8 H 0.08 2.18 7.99 -52.49 -0.42 1.76 16 9 C -0.01 -0.18 4.02 -27.89 -0.11 -0.29 16 10 C -0.02 -0.35 5.78 -27.89 -0.16 -0.51 16 11 C 0.22 3.73 7.75 -12.99 -0.10 3.63 16 12 N -0.48 -8.38 11.35 -9.89 -0.11 -8.49 16 13 C 0.19 3.21 7.83 -156.14 -1.22 1.98 16 14 C 0.07 1.02 5.91 -104.60 -0.62 0.40 16 15 C -0.17 -2.02 9.79 -39.10 -0.38 -2.41 16 16 C 0.14 1.44 11.16 -17.62 -0.20 1.24 16 17 N -0.53 -6.23 8.57 -13.40 -0.11 -6.35 16 18 C 0.32 4.08 7.49 -17.17 -0.13 3.95 16 19 O -0.29 -3.43 10.12 -18.75 -0.19 -3.62 16 20 C 0.06 0.55 4.18 -25.92 -0.11 0.44 16 21 C -0.15 -1.16 7.91 -25.92 -0.21 -1.37 16 22 C -0.14 -0.80 8.08 -25.92 -0.21 -1.01 16 23 C -0.14 -0.95 7.91 -25.92 -0.21 -1.16 16 24 C -0.16 -2.16 9.72 -38.93 -0.38 -2.53 16 25 N -0.38 -6.40 11.94 30.96 0.37 -6.03 16 26 O 0.08 1.40 11.29 18.03 0.20 1.60 16 27 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 28 H 0.03 0.61 7.20 -51.93 -0.37 0.23 16 29 H 0.02 0.43 7.57 -51.93 -0.39 0.04 16 30 H 0.10 1.55 8.14 -51.93 -0.42 1.13 16 31 H 0.11 1.79 8.14 -51.93 -0.42 1.37 16 32 H 0.15 1.72 7.96 -52.49 -0.42 1.30 16 33 H 0.17 1.11 8.06 -52.49 -0.42 0.69 16 34 H 0.12 1.09 6.87 -51.93 -0.36 0.73 16 35 H 0.09 0.72 8.14 -51.93 -0.42 0.29 16 36 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 37 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 38 H 0.08 0.39 8.14 -51.93 -0.42 -0.04 16 39 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 40 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 41 H 0.15 1.94 7.95 -52.49 -0.42 1.52 16 LS Contribution 355.18 15.07 5.35 5.35 Total: -1.00 -30.40 355.18 -8.20 -38.60 By element: Atomic # 1 Polarization: 3.47 SS G_CDS: -5.35 Total: -1.88 kcal Atomic # 6 Polarization: -5.42 SS G_CDS: -4.46 Total: -9.88 kcal Atomic # 7 Polarization: -47.35 SS G_CDS: 0.92 Total: -46.44 kcal Atomic # 8 Polarization: -2.03 SS G_CDS: 0.01 Total: -2.02 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -4.67 Total: 16.27 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -30.40 -8.20 -38.60 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000361262339.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.973 kcal (2) G-P(sol) polarization free energy of solvation -30.400 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.572 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.196 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.597 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.376 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds