Wall clock time and date at job start Tue Mar 31 2020 10:55:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86806 * 119.99563 * 2 1 4 4 H 1.48504 * 109.46991 * 269.99964 * 3 2 1 5 5 H 1.48504 * 109.47101 * 29.99837 * 3 2 1 6 6 H 1.48494 * 109.47120 * 150.00207 * 3 2 1 7 7 C 1.37872 * 120.00245 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00002 * 359.97438 * 7 2 1 9 9 C 1.50703 * 119.99957 * 179.97438 * 7 2 1 10 10 C 1.52993 * 109.47098 * 179.97438 * 9 7 2 11 11 C 1.50703 * 109.47098 * 179.97438 * 10 9 7 12 12 N 1.30979 * 126.44621 * 90.27149 * 11 10 9 13 13 C 1.35192 * 105.57852 * 180.12981 * 12 11 10 14 14 C 1.48500 * 126.40617 * 179.87609 * 13 12 11 15 15 C 1.39860 * 120.87247 * 359.73854 * 14 13 12 16 16 C 1.37886 * 119.15410 * 179.97438 * 15 14 13 17 17 N 1.31975 * 120.95645 * 359.72254 * 16 15 14 18 18 C 1.32262 * 121.91975 * 0.56757 * 17 16 15 19 19 O 1.35683 * 119.63273 * 179.70594 * 18 17 16 20 20 C 1.42905 * 116.99750 * 359.73194 * 19 18 17 21 21 C 1.53781 * 113.61093 * 247.49403 * 20 19 18 22 22 C 1.53777 * 87.07977 * 220.01856 * 21 20 19 23 23 C 1.53780 * 87.08217 * 25.43602 * 22 21 20 24 24 C 1.38769 * 120.73607 * 359.43684 * 18 17 16 25 25 N 1.30717 * 107.18471 * 359.61921 * 13 12 11 26 26 O 1.21286 * 110.10596 * 0.23647 * 25 13 12 27 27 H 0.96995 * 120.00662 * 359.97438 * 1 2 3 28 28 H 1.09000 * 109.47344 * 59.99674 * 9 7 2 29 29 H 1.09001 * 109.47077 * 300.00140 * 9 7 2 30 30 H 1.09007 * 109.47510 * 59.99998 * 10 9 7 31 31 H 1.09001 * 109.47294 * 300.00036 * 10 9 7 32 32 H 1.07995 * 120.42348 * 0.02562 * 15 14 13 33 33 H 1.08002 * 119.52026 * 179.97438 * 16 15 14 34 34 H 1.08993 * 112.85007 * 18.79957 * 20 19 18 35 35 H 1.08993 * 113.61733 * 334.56970 * 21 20 19 36 36 H 1.09001 * 113.61258 * 105.47714 * 21 20 19 37 37 H 1.09001 * 113.62025 * 270.88491 * 22 21 20 38 38 H 1.09002 * 113.61262 * 139.98379 * 22 21 20 39 39 H 1.09000 * 113.61269 * 220.01900 * 23 22 21 40 40 H 1.08997 * 113.69385 * 89.12846 * 23 22 21 41 41 H 1.08001 * 120.51642 * 180.29967 * 24 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6179 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4464 2.6528 0.7000 6 1 3.5466 1.4404 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5116 -1.1939 -0.0011 10 6 4.0216 -2.6363 -0.0010 11 6 5.5286 -2.6362 -0.0022 12 7 6.3076 -2.6408 1.0508 13 6 7.5704 -2.6357 0.5682 14 6 8.8204 -2.6353 1.3700 15 6 8.7762 -2.6351 2.7679 16 6 9.9586 -2.6354 3.4773 17 7 11.1230 -2.6412 2.8561 18 6 11.2116 -2.6360 1.5364 19 8 12.4332 -2.6364 0.9460 20 6 13.5714 -2.6366 1.8102 21 6 14.3884 -1.3351 1.7530 22 6 15.6476 -2.2150 1.8247 23 6 14.7997 -3.3415 1.2109 24 6 10.0690 -2.6358 0.7489 25 7 7.4854 -2.6367 -0.7362 26 8 6.3218 -2.6371 -1.0782 27 1 -0.4851 0.8399 0.0004 28 1 3.8753 -0.6802 0.8888 29 1 3.8745 -0.6798 -0.8911 30 1 3.6580 -3.1505 -0.8908 31 1 3.6587 -3.1500 0.8892 32 1 7.8282 -2.6357 3.2851 33 1 9.9315 -2.6348 4.5570 34 1 13.3334 -2.9601 2.8235 35 1 14.2855 -0.7960 0.8114 36 1 14.2525 -0.6956 2.6252 37 1 15.9782 -2.4222 2.8425 38 1 16.4557 -1.8744 1.1773 39 1 14.9958 -4.3218 1.6454 40 1 14.8085 -3.3523 0.1211 41 1 10.1455 -2.6364 -0.3284 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000361262339.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:55:01 Heat of formation + Delta-G solvation = 63.014312 kcal Electronic energy + Delta-G solvation = -24385.883122 eV Core-core repulsion = 20655.467042 eV Total energy + Delta-G solvation = -3730.416079 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.137 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -46.72865 -41.86096 -40.10268 -37.67328 -37.13586 -36.36030 -34.70860 -33.47710 -32.07866 -31.58566 -28.07293 -27.05478 -26.67278 -25.74530 -25.09646 -23.91715 -23.22731 -22.09497 -20.60090 -19.87948 -19.29429 -18.97017 -18.53682 -17.63873 -17.12092 -16.75412 -16.44019 -16.34419 -16.05785 -15.76999 -15.63622 -15.11320 -14.79544 -14.67795 -14.47394 -13.81531 -13.65985 -13.50867 -13.46531 -13.28408 -13.12669 -12.91819 -12.62838 -12.44311 -12.29909 -12.24068 -11.96757 -11.78084 -11.48213 -11.45488 -11.42304 -11.26199 -10.85767 -10.76535 -10.54662 -9.65194 -8.28710 -6.32966 -0.67645 -0.00198 0.18658 1.26443 1.36076 1.39073 1.48004 1.67920 1.78393 2.33689 2.35212 2.60476 2.76092 3.07083 3.16683 3.54353 3.56909 3.70390 3.80108 3.85549 3.90745 3.95872 4.04277 4.27615 4.38212 4.41068 4.49442 4.55595 4.60643 4.73869 4.74811 4.79078 4.87643 4.95294 5.00399 5.05687 5.08656 5.17154 5.25000 5.35834 5.42060 5.58373 6.16537 6.23833 6.63049 6.74989 6.92312 7.31577 8.86807 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.026200 B = 0.002244 C = 0.002206 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1068.432096 B =12476.100579 C =12689.424700 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.942 5.942 2 C 0.015 3.985 3 Si 0.936 3.064 4 H -0.268 1.268 5 H -0.284 1.284 6 H -0.255 1.255 7 C -0.526 4.526 8 H 0.054 0.946 9 C -0.005 4.005 10 C -0.009 4.009 11 C 0.216 3.784 12 N -0.488 5.488 13 C 0.195 3.805 14 C 0.051 3.949 15 C -0.170 4.170 16 C 0.154 3.846 17 N -0.535 5.535 18 C 0.320 3.680 19 O -0.304 6.304 20 C 0.045 3.955 21 C -0.155 4.155 22 C -0.126 4.126 23 C -0.135 4.135 24 C -0.172 4.172 25 N -0.387 5.387 26 O 0.080 5.920 27 H 0.267 0.733 28 H 0.021 0.979 29 H 0.024 0.976 30 H 0.118 0.882 31 H 0.117 0.883 32 H 0.159 0.841 33 H 0.209 0.791 34 H 0.116 0.884 35 H 0.083 0.917 36 H 0.075 0.925 37 H 0.099 0.901 38 H 0.089 0.911 39 H 0.086 0.914 40 H 0.088 0.912 41 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 29.806 -6.217 6.232 31.079 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.183 4.183 3 Si 0.761 3.239 4 H -0.193 1.193 5 H -0.210 1.210 6 H -0.179 1.179 7 C -0.564 4.564 8 H 0.073 0.927 9 C -0.044 4.044 10 C -0.048 4.048 11 C -0.003 4.003 12 N -0.221 5.221 13 C -0.075 4.075 14 C 0.041 3.959 15 C -0.191 4.191 16 C -0.001 4.001 17 N -0.259 5.259 18 C 0.141 3.859 19 O -0.212 6.212 20 C -0.010 4.010 21 C -0.192 4.192 22 C -0.163 4.163 23 C -0.173 4.173 24 C -0.195 4.195 25 N -0.095 5.095 26 O 0.020 5.980 27 H 0.076 0.924 28 H 0.040 0.960 29 H 0.042 0.958 30 H 0.136 0.864 31 H 0.136 0.864 32 H 0.177 0.823 33 H 0.226 0.774 34 H 0.134 0.866 35 H 0.101 0.899 36 H 0.094 0.906 37 H 0.117 0.883 38 H 0.108 0.892 39 H 0.104 0.896 40 H 0.107 0.893 41 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 31.304 -6.132 6.312 32.518 hybrid contribution -1.293 0.883 -0.707 1.717 sum 30.011 -5.249 5.606 30.978 Atomic orbital electron populations 1.70013 1.07934 1.28127 1.52169 1.25785 0.95438 1.02817 0.94304 0.85869 0.79412 0.79541 0.79110 1.19263 1.20977 1.17918 1.21241 0.90611 0.93936 1.50567 0.92738 1.19502 0.95102 0.92437 0.97365 1.20406 0.76799 1.00597 1.07025 1.29501 0.99302 0.92022 0.79481 1.72020 0.99344 1.21745 1.29031 1.23999 0.93457 1.02259 0.87754 1.17482 0.86744 0.98663 0.92983 1.22281 1.02284 1.02784 0.91790 1.23014 0.84449 0.90708 1.01923 1.67275 1.31185 1.18630 1.08850 1.19546 0.86090 0.92112 0.88104 1.86348 1.11784 1.86824 1.36204 1.24552 0.81429 0.99349 0.95709 1.23469 0.96136 0.96610 1.03027 1.22627 0.95949 0.95149 1.02618 1.23301 0.92548 0.99530 1.01881 1.20945 0.89332 1.07467 1.01750 1.74830 0.98136 1.21255 1.15231 1.85285 1.11082 1.65482 1.36155 0.92389 0.96014 0.95761 0.86352 0.86447 0.82295 0.77425 0.86590 0.89886 0.90589 0.88283 0.89234 0.89578 0.89334 0.84014 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.31 13.96 21.45 0.30 -56.01 16 2 C 0.01 0.81 5.47 84.65 0.46 1.27 16 3 Si 0.94 42.82 27.47 68.60 1.88 44.70 16 4 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 5 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 6 H -0.26 -11.12 6.54 99.48 0.65 -10.47 16 7 C -0.53 -27.67 9.66 25.60 0.25 -27.43 16 8 H 0.05 3.06 7.99 -2.91 -0.02 3.04 16 9 C -0.01 -0.23 4.02 29.85 0.12 -0.11 16 10 C -0.01 -0.32 5.78 29.85 0.17 -0.14 16 11 C 0.22 7.18 7.75 88.36 0.68 7.86 16 12 N -0.49 -16.47 11.35 -302.58 -3.44 -19.91 16 13 C 0.20 6.33 7.83 137.34 1.08 7.40 16 14 C 0.05 1.39 5.91 -19.85 -0.12 1.27 16 15 C -0.17 -3.73 9.79 22.58 0.22 -3.51 16 16 C 0.15 2.73 11.16 84.59 0.94 3.67 16 17 N -0.53 -11.45 8.57 -309.16 -2.65 -14.10 16 18 C 0.32 7.79 7.49 84.76 0.63 8.42 16 19 O -0.30 -7.00 10.12 -90.01 -0.91 -7.91 16 20 C 0.05 0.77 4.18 31.12 0.13 0.90 16 21 C -0.15 -2.15 7.91 31.12 0.25 -1.90 16 22 C -0.13 -1.18 8.08 31.12 0.25 -0.93 16 23 C -0.14 -1.66 7.91 31.12 0.25 -1.42 16 24 C -0.17 -4.55 9.72 22.69 0.22 -4.33 16 25 N -0.39 -13.01 11.94 -59.23 -0.71 -13.71 16 26 O 0.08 2.65 11.29 74.58 0.84 3.50 16 27 H 0.27 14.99 8.31 -92.71 -0.77 14.22 16 28 H 0.02 0.95 7.20 -2.39 -0.02 0.93 16 29 H 0.02 1.02 7.57 -2.39 -0.02 1.00 16 30 H 0.12 3.51 8.14 -2.38 -0.02 3.49 16 31 H 0.12 3.73 8.14 -2.39 -0.02 3.71 16 32 H 0.16 3.26 7.96 -2.91 -0.02 3.23 16 33 H 0.21 1.89 8.06 -2.91 -0.02 1.87 16 34 H 0.12 1.98 6.87 -2.39 -0.02 1.96 16 35 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 36 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 37 H 0.10 0.68 8.14 -2.39 -0.02 0.66 16 38 H 0.09 0.66 8.14 -2.39 -0.02 0.64 16 39 H 0.09 0.88 8.14 -2.39 -0.02 0.86 16 40 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16 41 H 0.14 3.80 7.95 -2.91 -0.02 3.77 16 Total: -1.00 -65.25 355.18 1.86 -63.39 By element: Atomic # 1 Polarization: 8.02 SS G_CDS: 0.99 Total: 9.01 kcal Atomic # 6 Polarization: -14.50 SS G_CDS: 5.54 Total: -8.96 kcal Atomic # 7 Polarization: -97.24 SS G_CDS: -6.49 Total: -103.73 kcal Atomic # 8 Polarization: -4.35 SS G_CDS: -0.07 Total: -4.42 kcal Atomic # 14 Polarization: 42.82 SS G_CDS: 1.88 Total: 44.70 kcal Total: -65.25 1.86 -63.39 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000361262339.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.407 kcal (2) G-P(sol) polarization free energy of solvation -65.250 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.157 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.857 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.392 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.014 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds