Wall clock time and date at job start Tue Mar 31 2020 11:02:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 O 1.21376 * 119.99809 * 2 1 4 4 C 1.46286 * 120.00327 * 179.97438 * 2 1 3 5 5 C 1.36565 * 127.22977 * 7.18030 * 4 2 1 6 6 C 1.50704 * 125.15111 * 0.04618 * 5 4 2 7 7 O 1.33844 * 109.69001 * 180.02562 * 5 4 2 8 8 C 1.34461 * 111.48866 * 0.02562 * 7 5 4 9 9 N 1.33108 * 133.94852 * 179.97438 * 8 7 5 10 10 C 1.31600 * 120.77914 * 179.97438 * 9 8 7 11 11 N 1.32004 * 122.69070 * 359.67545 * 10 9 8 12 12 C 1.33097 * 120.81975 * 0.62839 * 11 10 9 13 13 N 1.38392 * 120.83915 * 179.70396 * 12 11 10 14 14 C 1.46501 * 120.00073 * 6.21017 * 13 12 11 15 15 C 1.52996 * 109.47142 * 183.55579 * 14 13 12 16 16 C 1.50706 * 115.54977 * 294.17749 * 15 14 13 17 17 H 1.07995 * 119.99664 * 97.49700 * 16 15 14 18 18 C 1.37880 * 120.00104 * 277.49959 * 16 15 14 19 19 N 1.31510 * 119.99585 * 8.70444 * 18 16 15 20 20 Si 1.86797 * 119.99807 * 188.70409 * 18 16 15 21 21 H 1.48495 * 109.47028 * 269.99900 * 20 18 16 22 22 H 1.48498 * 109.46927 * 30.00342 * 20 18 16 23 23 H 1.48509 * 109.46949 * 150.00030 * 20 18 16 24 24 C 1.52995 * 117.52067 * 79.88033 * 15 14 13 25 25 C 1.52999 * 60.00183 * 107.48197 * 24 15 14 26 26 C 1.39857 * 118.31831 * 359.42324 * 12 11 10 27 27 H 1.09001 * 109.46672 * 240.00276 * 1 2 3 28 28 H 1.08998 * 109.47300 * 359.97438 * 1 2 3 29 29 H 1.08996 * 109.47201 * 120.00527 * 1 2 3 30 30 H 1.08999 * 109.46732 * 179.97438 * 6 5 4 31 31 H 1.09001 * 109.47294 * 299.96890 * 6 5 4 32 32 H 1.08997 * 109.47157 * 59.97684 * 6 5 4 33 33 H 1.08002 * 118.65652 * 180.02562 * 10 9 8 34 34 H 0.96998 * 119.99987 * 186.21149 * 13 12 11 35 35 H 1.08998 * 109.47301 * 63.55103 * 14 13 12 36 36 H 1.09000 * 109.46820 * 303.55426 * 14 13 12 37 37 H 0.97003 * 120.00472 * 354.94980 * 19 18 16 38 38 H 1.08999 * 117.50090 * 214.96737 * 24 15 14 39 39 H 1.08995 * 117.50014 * 359.97438 * 24 15 14 40 40 H 1.09005 * 117.49978 * 252.51225 * 25 24 15 41 41 H 1.09000 * 117.51710 * 107.48177 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1138 1.0512 0.0000 4 6 2.2385 -1.2668 0.0006 5 6 1.7174 -2.5219 -0.1348 6 6 0.2553 -2.8395 -0.3152 7 8 2.7021 -3.4270 -0.0834 8 6 3.9008 -2.8416 0.0850 9 7 5.1457 -3.3002 0.1933 10 6 6.1564 -2.4731 0.3556 11 7 6.0034 -1.1632 0.4135 12 6 4.7950 -0.6130 0.3206 13 7 4.6336 0.7599 0.3873 14 6 5.8082 1.6346 0.4252 15 6 5.3570 3.0876 0.5865 16 6 4.5833 3.6604 -0.5730 17 1 3.5040 3.6831 -0.5433 18 6 5.2533 4.1554 -1.6717 19 7 6.5508 3.9749 -1.7868 20 14 4.3180 5.0824 -2.9965 21 1 3.8425 4.1259 -4.0280 22 1 3.1531 5.7739 -2.3881 23 1 5.2149 6.0845 -3.6265 24 6 4.9753 3.5575 1.9915 25 6 6.2823 4.0336 1.3545 26 6 3.6933 -1.4570 0.1478 27 1 -0.3633 -0.5138 0.8900 28 1 -0.3634 1.0276 0.0005 29 1 -0.3633 -0.5139 -0.8899 30 1 0.1254 -3.9186 -0.3971 31 1 -0.3054 -2.4702 0.5436 32 1 -0.1115 -2.3595 -1.2224 33 1 7.1523 -2.8823 0.4392 34 1 3.7427 1.1429 0.4090 35 1 6.3697 1.5293 -0.5030 36 1 6.4420 1.3554 1.2669 37 1 7.0485 3.5586 -1.0657 38 1 4.1645 4.2810 2.0774 39 1 5.0451 2.8314 2.8014 40 1 7.2124 3.6207 1.7452 41 1 6.3317 5.0701 1.0209 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000362319480.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:02:50 Heat of formation + Delta-G solvation = 51.714864 kcal Electronic energy + Delta-G solvation = -26659.438251 eV Core-core repulsion = 22928.532191 eV Total energy + Delta-G solvation = -3730.906060 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.137 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.86460 -39.69499 -39.22693 -37.36346 -35.09057 -33.87713 -32.25784 -31.89931 -31.26105 -29.73921 -27.78579 -26.03835 -24.81668 -23.64341 -23.20057 -22.41064 -21.29337 -19.70420 -19.45855 -18.42070 -17.28724 -16.93023 -16.79603 -16.47266 -15.26976 -15.05869 -14.92959 -14.79232 -14.45683 -14.29666 -13.95121 -13.75092 -13.73731 -13.45102 -13.19969 -12.94308 -12.80372 -12.48864 -12.25526 -12.03483 -11.89846 -10.94185 -10.91729 -10.75409 -10.59993 -10.47230 -10.12410 -9.91598 -9.82152 -9.62818 -9.08259 -8.98510 -8.58295 -8.43972 -8.28867 -7.36451 -6.34100 -4.07095 0.64105 1.20826 1.74053 1.99854 2.75016 3.42316 3.45636 3.61480 3.63479 3.82025 4.09614 4.11085 4.35337 4.51326 4.54236 4.71820 4.85825 4.91386 4.98266 5.07478 5.16393 5.22074 5.31739 5.33029 5.36231 5.54468 5.74499 5.86751 6.04343 6.13308 6.17686 6.27406 6.41223 6.54233 6.62852 6.82831 6.86428 7.06935 7.20103 7.21820 7.39326 7.71542 8.24610 8.26669 8.46221 8.76363 8.88600 9.66749 11.05039 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.013085 B = 0.005034 C = 0.004255 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2139.280757 B = 5560.652617 C = 6578.430478 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.411 3.589 3 O -0.429 6.429 4 C -0.220 4.220 5 C 0.079 3.921 6 C -0.086 4.086 7 O -0.170 6.170 8 C 0.321 3.679 9 N -0.569 5.569 10 C 0.374 3.626 11 N -0.590 5.590 12 C 0.489 3.511 13 N -0.648 5.648 14 C 0.155 3.845 15 C 0.006 3.994 16 C -0.567 4.567 17 H 0.056 0.944 18 C 0.028 3.972 19 N -0.904 5.904 20 Si 1.068 2.932 21 H -0.290 1.290 22 H -0.288 1.288 23 H -0.284 1.284 24 C -0.193 4.193 25 C -0.170 4.170 26 C -0.275 4.275 27 H 0.095 0.905 28 H 0.091 0.909 29 H 0.096 0.904 30 H 0.087 0.913 31 H 0.100 0.900 32 H 0.100 0.900 33 H 0.206 0.794 34 H 0.426 0.574 35 H 0.068 0.932 36 H 0.045 0.955 37 H 0.274 0.726 38 H 0.081 0.919 39 H 0.066 0.934 40 H 0.069 0.931 41 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.410 -13.074 4.513 18.583 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.253 4.253 2 C 0.290 3.710 3 O -0.303 6.303 4 C -0.225 4.225 5 C 0.028 3.972 6 C -0.142 4.142 7 O -0.065 6.065 8 C 0.141 3.859 9 N -0.302 5.302 10 C 0.085 3.915 11 N -0.320 5.320 12 C 0.237 3.763 13 N -0.288 5.288 14 C 0.031 3.969 15 C 0.005 3.995 16 C -0.605 4.605 17 H 0.074 0.926 18 C -0.178 4.178 19 N -0.538 5.538 20 Si 0.896 3.104 21 H -0.217 1.217 22 H -0.214 1.214 23 H -0.210 1.210 24 C -0.231 4.231 25 C -0.208 4.208 26 C -0.286 4.286 27 H 0.114 0.886 28 H 0.110 0.890 29 H 0.115 0.885 30 H 0.106 0.894 31 H 0.119 0.881 32 H 0.118 0.882 33 H 0.222 0.778 34 H 0.281 0.719 35 H 0.086 0.914 36 H 0.063 0.937 37 H 0.086 0.914 38 H 0.100 0.900 39 H 0.084 0.916 40 H 0.087 0.913 41 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -11.111 -12.184 3.064 16.772 hybrid contribution -0.998 -0.401 1.438 1.796 sum -12.108 -12.585 4.502 18.035 Atomic orbital electron populations 1.22385 0.92663 1.05932 1.04283 1.21628 0.91616 0.86227 0.71536 1.90186 1.70311 1.33580 1.36266 1.21136 0.92320 0.95074 1.13934 1.22819 0.90249 0.85716 0.98414 1.20817 0.84240 1.04802 1.04342 1.83573 1.12864 1.36346 1.73670 1.19209 0.85910 0.85871 0.94861 1.67306 0.95012 1.40923 1.26917 1.24605 0.96372 0.83754 0.86813 1.68313 1.22445 1.14140 1.27139 1.18201 0.86783 0.86619 0.84714 1.46226 1.13939 1.00232 1.68357 1.21227 0.85842 0.89421 1.00373 1.19315 0.99141 0.89712 0.91325 1.21235 0.93611 1.43224 1.02428 0.92596 1.25738 0.96872 0.95825 0.99372 1.70709 1.07723 1.41271 1.34103 0.83569 0.74892 0.76530 0.75379 1.21663 1.21422 1.20981 1.22844 0.99082 1.03804 0.97338 1.22756 0.92263 1.00521 1.05301 1.20235 0.93771 0.95741 1.18895 0.88625 0.88987 0.88518 0.89413 0.88138 0.88161 0.77774 0.71852 0.91369 0.93668 0.91443 0.90025 0.91591 0.91265 0.89528 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.59 8.60 36.01 0.31 -1.28 16 2 C 0.41 5.91 7.22 -31.08 -0.22 5.68 16 3 O -0.43 -8.32 13.79 5.47 0.08 -8.25 16 4 C -0.22 -3.31 6.26 -103.52 -0.65 -3.96 16 5 C 0.08 0.92 7.32 -34.91 -0.26 0.67 16 6 C -0.09 -0.47 8.66 36.01 0.31 -0.16 16 7 O -0.17 -2.47 10.50 6.49 0.07 -2.40 16 8 C 0.32 5.58 8.61 -16.28 -0.14 5.44 16 9 N -0.57 -9.74 10.46 -14.61 -0.15 -9.89 16 10 C 0.37 6.08 12.23 -92.14 -1.13 4.95 16 11 N -0.59 -11.49 9.74 -13.75 -0.13 -11.62 16 12 C 0.49 10.18 7.53 -154.74 -1.16 9.02 16 13 N -0.65 -14.62 5.60 -60.22 -0.34 -14.96 16 14 C 0.16 3.69 5.43 -4.04 -0.02 3.67 16 15 C 0.01 0.15 0.89 -155.66 -0.14 0.01 16 16 C -0.57 -15.75 8.62 -34.44 -0.30 -16.05 16 17 H 0.06 1.60 7.83 -52.49 -0.41 1.19 16 18 C 0.03 0.79 5.39 -17.82 -0.10 0.69 16 19 N -0.90 -26.76 13.60 55.43 0.75 -26.00 16 20 Si 1.07 25.48 29.91 -169.99 -5.08 20.39 16 21 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 22 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 23 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 24 C -0.19 -4.29 9.96 -26.73 -0.27 -4.55 16 25 C -0.17 -3.92 9.01 -26.73 -0.24 -4.16 16 26 C -0.27 -5.11 6.31 -104.82 -0.66 -5.77 16 27 H 0.10 0.51 7.03 -51.93 -0.37 0.14 16 28 H 0.09 0.78 8.12 -51.93 -0.42 0.36 16 29 H 0.10 0.52 6.32 -51.93 -0.33 0.19 16 30 H 0.09 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.10 0.33 6.71 -51.93 -0.35 -0.02 16 32 H 0.10 0.38 6.79 -51.93 -0.35 0.02 16 33 H 0.21 2.36 8.06 -52.49 -0.42 1.94 16 34 H 0.43 9.75 3.83 -43.40 -0.17 9.59 16 35 H 0.07 1.80 7.59 -51.93 -0.39 1.40 16 36 H 0.05 1.02 8.08 -51.93 -0.42 0.60 16 37 H 0.27 8.05 6.11 -40.82 -0.25 7.80 16 38 H 0.08 1.80 8.14 -51.93 -0.42 1.38 16 39 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 40 H 0.07 1.47 8.14 -51.93 -0.42 1.04 16 41 H 0.09 2.10 8.14 -51.93 -0.42 1.67 16 LS Contribution 344.14 15.07 5.19 5.19 Total: -1.00 -34.97 344.14 -9.07 -44.04 By element: Atomic # 1 Polarization: 14.11 SS G_CDS: -4.79 Total: 9.32 kcal Atomic # 6 Polarization: -1.15 SS G_CDS: -4.66 Total: -5.81 kcal Atomic # 7 Polarization: -62.61 SS G_CDS: 0.13 Total: -62.48 kcal Atomic # 8 Polarization: -10.80 SS G_CDS: 0.14 Total: -10.65 kcal Atomic # 14 Polarization: 25.48 SS G_CDS: -5.08 Total: 20.39 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -34.97 -9.07 -44.04 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000362319480.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.755 kcal (2) G-P(sol) polarization free energy of solvation -34.966 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.789 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.074 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.040 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.715 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds