Wall clock time and date at job start Tue Mar 31 2020 11:02:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 O 1.21376 * 119.99809 * 2 1 4 4 C 1.46286 * 120.00327 * 179.97438 * 2 1 3 5 5 C 1.36565 * 127.22977 * 7.18030 * 4 2 1 6 6 C 1.50704 * 125.15111 * 0.04618 * 5 4 2 7 7 O 1.33844 * 109.69001 * 180.02562 * 5 4 2 8 8 C 1.34461 * 111.48866 * 0.02562 * 7 5 4 9 9 N 1.33108 * 133.94852 * 179.97438 * 8 7 5 10 10 C 1.31600 * 120.77914 * 179.97438 * 9 8 7 11 11 N 1.32004 * 122.69070 * 359.67545 * 10 9 8 12 12 C 1.33097 * 120.81975 * 0.62839 * 11 10 9 13 13 N 1.38392 * 120.83915 * 179.70396 * 12 11 10 14 14 C 1.46501 * 120.00073 * 6.21017 * 13 12 11 15 15 C 1.52996 * 109.47142 * 183.55579 * 14 13 12 16 16 C 1.50706 * 115.54977 * 294.17749 * 15 14 13 17 17 H 1.07995 * 119.99664 * 97.49700 * 16 15 14 18 18 C 1.37880 * 120.00104 * 277.49959 * 16 15 14 19 19 N 1.31510 * 119.99585 * 8.70444 * 18 16 15 20 20 Si 1.86797 * 119.99807 * 188.70409 * 18 16 15 21 21 H 1.48495 * 109.47028 * 269.99900 * 20 18 16 22 22 H 1.48498 * 109.46927 * 30.00342 * 20 18 16 23 23 H 1.48509 * 109.46949 * 150.00030 * 20 18 16 24 24 C 1.52995 * 117.52067 * 79.88033 * 15 14 13 25 25 C 1.52999 * 60.00183 * 107.48197 * 24 15 14 26 26 C 1.39857 * 118.31831 * 359.42324 * 12 11 10 27 27 H 1.09001 * 109.46672 * 240.00276 * 1 2 3 28 28 H 1.08998 * 109.47300 * 359.97438 * 1 2 3 29 29 H 1.08996 * 109.47201 * 120.00527 * 1 2 3 30 30 H 1.08999 * 109.46732 * 179.97438 * 6 5 4 31 31 H 1.09001 * 109.47294 * 299.96890 * 6 5 4 32 32 H 1.08997 * 109.47157 * 59.97684 * 6 5 4 33 33 H 1.08002 * 118.65652 * 180.02562 * 10 9 8 34 34 H 0.96998 * 119.99987 * 186.21149 * 13 12 11 35 35 H 1.08998 * 109.47301 * 63.55103 * 14 13 12 36 36 H 1.09000 * 109.46820 * 303.55426 * 14 13 12 37 37 H 0.97003 * 120.00472 * 354.94980 * 19 18 16 38 38 H 1.08999 * 117.50090 * 214.96737 * 24 15 14 39 39 H 1.08995 * 117.50014 * 359.97438 * 24 15 14 40 40 H 1.09005 * 117.49978 * 252.51225 * 25 24 15 41 41 H 1.09000 * 117.51710 * 107.48177 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1138 1.0512 0.0000 4 6 2.2385 -1.2668 0.0006 5 6 1.7174 -2.5219 -0.1348 6 6 0.2553 -2.8395 -0.3152 7 8 2.7021 -3.4270 -0.0834 8 6 3.9008 -2.8416 0.0850 9 7 5.1457 -3.3002 0.1933 10 6 6.1564 -2.4731 0.3556 11 7 6.0034 -1.1632 0.4135 12 6 4.7950 -0.6130 0.3206 13 7 4.6336 0.7599 0.3873 14 6 5.8082 1.6346 0.4252 15 6 5.3570 3.0876 0.5865 16 6 4.5833 3.6604 -0.5730 17 1 3.5040 3.6831 -0.5433 18 6 5.2533 4.1554 -1.6717 19 7 6.5508 3.9749 -1.7868 20 14 4.3180 5.0824 -2.9965 21 1 3.8425 4.1259 -4.0280 22 1 3.1531 5.7739 -2.3881 23 1 5.2149 6.0845 -3.6265 24 6 4.9753 3.5575 1.9915 25 6 6.2823 4.0336 1.3545 26 6 3.6933 -1.4570 0.1478 27 1 -0.3633 -0.5138 0.8900 28 1 -0.3634 1.0276 0.0005 29 1 -0.3633 -0.5139 -0.8899 30 1 0.1254 -3.9186 -0.3971 31 1 -0.3054 -2.4702 0.5436 32 1 -0.1115 -2.3595 -1.2224 33 1 7.1523 -2.8823 0.4392 34 1 3.7427 1.1429 0.4090 35 1 6.3697 1.5293 -0.5030 36 1 6.4420 1.3554 1.2669 37 1 7.0485 3.5586 -1.0657 38 1 4.1645 4.2810 2.0774 39 1 5.0451 2.8314 2.8014 40 1 7.2124 3.6207 1.7452 41 1 6.3317 5.0701 1.0209 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000362319480.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:02:49 Heat of formation + Delta-G solvation = 28.073261 kcal Electronic energy + Delta-G solvation = -26660.463428 eV Core-core repulsion = 22928.532191 eV Total energy + Delta-G solvation = -3731.931237 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.137 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -44.06680 -41.05502 -40.36442 -39.18324 -36.64386 -34.89363 -34.02011 -33.57680 -32.54589 -30.50160 -28.91799 -27.63900 -26.90058 -24.88693 -24.50452 -23.55202 -23.11214 -21.55369 -20.80482 -19.71115 -18.68754 -18.45374 -18.08491 -17.95888 -16.59340 -16.41307 -16.08720 -15.94791 -15.79957 -15.68168 -15.56820 -15.46430 -14.92748 -14.69358 -14.44015 -14.23545 -14.06089 -13.80786 -13.72716 -12.95655 -12.85869 -12.73275 -12.53097 -12.34404 -12.29157 -11.98439 -11.94719 -11.54074 -11.14899 -11.01801 -10.62391 -10.54007 -10.46846 -10.27195 -10.24732 -8.82462 -8.56599 -6.28999 -0.44817 -0.11873 0.38540 0.86450 1.47131 1.55484 1.70460 1.73906 2.11354 2.53767 2.71251 2.81859 3.01033 3.17962 3.21749 3.34508 3.38967 3.60714 3.80453 3.96979 4.10600 4.23889 4.28371 4.40804 4.47268 4.51859 4.53175 4.57894 4.70804 4.75191 4.79056 4.81936 4.97401 5.03894 5.07022 5.29149 5.33783 5.36788 5.58387 5.70022 6.07472 6.15119 6.22851 6.27576 6.67884 6.89095 7.28113 7.50575 8.82861 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.013085 B = 0.005034 C = 0.004255 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2139.280757 B = 5560.652617 C = 6578.430478 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.409 3.591 3 O -0.496 6.496 4 C -0.270 4.270 5 C 0.130 3.870 6 C -0.092 4.092 7 O -0.169 6.169 8 C 0.305 3.695 9 N -0.566 5.566 10 C 0.367 3.633 11 N -0.611 5.611 12 C 0.463 3.537 13 N -0.668 5.668 14 C 0.178 3.822 15 C -0.023 4.023 16 C -0.569 4.569 17 H 0.039 0.961 18 C -0.019 4.019 19 N -0.928 5.928 20 Si 1.109 2.891 21 H -0.284 1.284 22 H -0.271 1.271 23 H -0.280 1.280 24 C -0.171 4.171 25 C -0.165 4.165 26 C -0.295 4.295 27 H 0.133 0.867 28 H 0.085 0.915 29 H 0.133 0.867 30 H 0.109 0.891 31 H 0.137 0.863 32 H 0.130 0.870 33 H 0.247 0.753 34 H 0.423 0.577 35 H 0.028 0.972 36 H 0.050 0.950 37 H 0.265 0.735 38 H 0.082 0.918 39 H 0.086 0.914 40 H 0.087 0.913 41 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.632 -15.131 4.712 22.260 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C 0.292 3.708 3 O -0.375 6.375 4 C -0.274 4.274 5 C 0.079 3.921 6 C -0.147 4.147 7 O -0.063 6.063 8 C 0.125 3.875 9 N -0.297 5.297 10 C 0.079 3.921 11 N -0.341 5.341 12 C 0.213 3.787 13 N -0.311 5.311 14 C 0.053 3.947 15 C -0.024 4.024 16 C -0.606 4.606 17 H 0.057 0.943 18 C -0.219 4.219 19 N -0.564 5.564 20 Si 0.932 3.068 21 H -0.211 1.211 22 H -0.196 1.196 23 H -0.205 1.205 24 C -0.208 4.208 25 C -0.203 4.203 26 C -0.306 4.306 27 H 0.151 0.849 28 H 0.104 0.896 29 H 0.151 0.849 30 H 0.127 0.873 31 H 0.154 0.846 32 H 0.148 0.852 33 H 0.263 0.737 34 H 0.279 0.721 35 H 0.046 0.954 36 H 0.068 0.932 37 H 0.075 0.925 38 H 0.100 0.900 39 H 0.104 0.896 40 H 0.105 0.895 41 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -14.357 -14.322 3.281 20.542 hybrid contribution -0.130 -0.029 1.400 1.406 sum -14.487 -14.350 4.681 20.922 Atomic orbital electron populations 1.22498 0.87358 1.06832 1.07559 1.22597 0.94292 0.84819 0.69066 1.90150 1.71813 1.35438 1.40060 1.21437 0.90889 0.97161 1.17898 1.24103 0.91851 0.83999 0.92184 1.21401 0.79269 1.06960 1.07078 1.83655 1.12352 1.36890 1.73448 1.19456 0.86840 0.85802 0.95399 1.67397 0.95267 1.40956 1.26116 1.25433 0.97853 0.82770 0.86088 1.68301 1.22605 1.15757 1.27475 1.18519 0.88165 0.86346 0.85692 1.46161 1.13075 1.00890 1.71010 1.20749 0.86302 0.89281 0.98357 1.19347 1.00606 0.90440 0.91977 1.21382 0.92963 1.42720 1.03582 0.94312 1.26986 0.97038 0.96321 1.01598 1.70808 1.08490 1.42964 1.34153 0.83045 0.74472 0.75786 0.73520 1.21068 1.19633 1.20503 1.22819 0.98341 1.03412 0.96236 1.22704 0.93399 0.99315 1.04901 1.20625 0.95586 0.95968 1.18444 0.84869 0.89590 0.84874 0.87267 0.84553 0.85222 0.73711 0.72113 0.95353 0.93227 0.92504 0.89981 0.89595 0.89503 0.91057 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.32 8.60 71.24 0.61 -1.71 16 2 C 0.41 11.43 7.22 27.78 0.20 11.63 16 3 O -0.50 -20.06 13.79 -3.33 -0.05 -20.11 16 4 C -0.27 -7.83 6.26 -19.15 -0.12 -7.95 16 5 C 0.13 2.59 7.32 25.30 0.19 2.77 16 6 C -0.09 -0.43 8.66 71.24 0.62 0.19 16 7 O -0.17 -4.53 10.50 0.32 0.00 -4.52 16 8 C 0.30 10.47 8.61 84.97 0.73 11.20 16 9 N -0.57 -19.16 10.46 -313.23 -3.28 -22.44 16 10 C 0.37 11.98 12.23 180.88 2.21 14.19 16 11 N -0.61 -24.75 9.74 -197.43 -1.92 -26.68 16 12 C 0.46 20.23 7.53 133.24 1.00 21.23 16 13 N -0.67 -31.93 5.60 -344.44 -1.93 -33.86 16 14 C 0.18 8.96 5.43 86.38 0.47 9.42 16 15 C -0.02 -1.18 0.89 -52.93 -0.05 -1.23 16 16 C -0.57 -32.86 8.62 25.60 0.22 -32.64 16 17 H 0.04 2.32 7.83 -2.91 -0.02 2.30 16 18 C -0.02 -1.13 5.39 84.66 0.46 -0.67 16 19 N -0.93 -57.03 13.60 21.45 0.29 -56.74 16 20 Si 1.11 52.37 29.91 68.60 2.05 54.43 16 21 H -0.28 -13.07 7.11 99.48 0.71 -12.36 16 22 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 23 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 24 C -0.17 -7.67 9.96 30.59 0.30 -7.36 16 25 C -0.17 -7.78 9.01 30.59 0.28 -7.51 16 26 C -0.29 -11.19 6.31 -19.99 -0.13 -11.31 16 27 H 0.13 0.67 7.03 -2.39 -0.02 0.65 16 28 H 0.09 1.24 8.12 -2.39 -0.02 1.22 16 29 H 0.13 0.68 6.32 -2.39 -0.02 0.67 16 30 H 0.11 0.20 8.14 -2.39 -0.02 0.18 16 31 H 0.14 -0.14 6.71 -2.39 -0.02 -0.15 16 32 H 0.13 0.06 6.79 -2.39 -0.02 0.04 16 33 H 0.25 5.45 8.06 -2.91 -0.02 5.43 16 34 H 0.42 20.55 3.83 -133.60 -0.51 20.03 16 35 H 0.03 1.61 7.59 -2.39 -0.02 1.59 16 36 H 0.05 2.36 8.08 -2.39 -0.02 2.34 16 37 H 0.26 16.31 6.11 -92.71 -0.57 15.75 16 38 H 0.08 3.64 8.14 -2.39 -0.02 3.62 16 39 H 0.09 3.49 8.14 -2.39 -0.02 3.47 16 40 H 0.09 3.73 8.14 -2.38 -0.02 3.71 16 41 H 0.07 3.55 8.14 -2.39 -0.02 3.53 16 Total: -1.00 -84.03 344.14 2.95 -81.09 By element: Atomic # 1 Polarization: 27.81 SS G_CDS: 0.78 Total: 28.59 kcal Atomic # 6 Polarization: -6.74 SS G_CDS: 7.00 Total: 0.25 kcal Atomic # 7 Polarization: -132.88 SS G_CDS: -6.84 Total: -139.72 kcal Atomic # 8 Polarization: -24.59 SS G_CDS: -0.04 Total: -24.63 kcal Atomic # 14 Polarization: 52.37 SS G_CDS: 2.05 Total: 54.43 kcal Total: -84.03 2.95 -81.09 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000362319480.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.159 kcal (2) G-P(sol) polarization free energy of solvation -84.031 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.128 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.945 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.086 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.073 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds