Wall clock time and date at job start Tue Mar 31 2020 10:45:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13600 * 1 3 3 C 1.43209 * 179.97438 * 2 1 4 4 C 1.40298 * 120.50500 * 185.88522 * 3 2 1 5 5 C 1.37982 * 118.35340 * 179.75079 * 4 3 2 6 6 C 1.39138 * 119.26873 * 0.51266 * 5 4 3 7 7 O 1.35546 * 119.52043 * 179.74721 * 6 5 4 8 8 C 1.42900 * 116.99944 * 179.72960 * 7 6 5 9 9 C 1.53006 * 109.46976 * 90.00179 * 8 7 6 10 10 C 1.52997 * 109.47127 * 179.97438 * 9 8 7 11 11 C 1.53000 * 109.47060 * 300.00449 * 10 9 8 12 12 N 1.46499 * 109.46840 * 180.02562 * 11 10 9 13 13 C 1.34782 * 120.00074 * 155.00031 * 12 11 10 14 14 O 1.21689 * 119.99621 * 359.97438 * 13 12 11 15 15 C 1.46375 * 120.00180 * 179.97438 * 13 12 11 16 16 H 1.08000 * 119.99644 * 359.97438 * 15 13 12 17 17 C 1.40044 * 120.00288 * 179.97438 * 15 13 12 18 18 N 1.30675 * 119.99573 * 359.97438 * 17 15 13 19 19 Si 1.86798 * 120.00330 * 179.97438 * 17 15 13 20 20 H 1.48503 * 109.47170 * 59.99901 * 19 17 15 21 21 H 1.48495 * 109.47273 * 180.02562 * 19 17 15 22 22 H 1.48498 * 109.46945 * 300.00408 * 19 17 15 23 23 C 1.52996 * 109.47328 * 60.00126 * 11 10 9 24 24 C 1.52997 * 109.47084 * 210.00118 * 8 7 6 25 25 N 1.32383 * 120.95854 * 359.47981 * 6 5 4 26 26 C 1.31694 * 121.80723 * 0.26741 * 25 6 5 27 27 H 1.08004 * 120.81994 * 0.04770 * 4 3 2 28 28 H 1.07995 * 120.36479 * 180.26328 * 5 4 3 29 29 H 1.09001 * 109.47130 * 330.00410 * 8 7 6 30 30 H 1.08998 * 109.46505 * 59.99598 * 9 8 7 31 31 H 1.08996 * 109.46884 * 300.00479 * 9 8 7 32 32 H 1.09002 * 109.47153 * 180.02562 * 10 9 8 33 33 H 1.09001 * 109.46832 * 60.00321 * 10 9 8 34 34 H 1.09001 * 109.47194 * 299.99650 * 11 10 9 35 35 H 0.97002 * 120.00427 * 334.99530 * 12 11 10 36 36 H 0.97003 * 119.99389 * 179.97438 * 18 17 15 37 37 H 1.08992 * 109.47554 * 59.99639 * 23 11 10 38 38 H 1.09004 * 109.47108 * 179.97438 * 23 11 10 39 39 H 1.09002 * 109.47045 * 60.00217 * 24 8 7 40 40 H 1.09001 * 109.47375 * 300.00142 * 24 8 7 41 41 H 1.07995 * 119.68552 * 179.97438 * 26 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5681 0.0006 0.0000 4 6 3.2797 1.2034 0.1239 5 6 4.6586 1.1519 0.1239 6 6 5.2934 -0.0791 -0.0088 7 8 6.6477 -0.1350 -0.0147 8 6 7.2431 -1.4272 -0.1480 9 6 7.4555 -1.7404 -1.6305 10 6 8.0935 -3.1236 -1.7732 11 6 9.4417 -3.1404 -1.0500 12 7 10.0529 -4.4647 -1.1872 13 6 11.3908 -4.6019 -1.0993 14 8 12.0911 -3.6255 -0.9065 15 6 12.0015 -5.9252 -1.2358 16 1 11.3799 -6.7917 -1.4065 17 6 13.3917 -6.0676 -1.1450 18 7 14.1438 -5.0190 -0.9390 19 14 14.1709 -7.7564 -1.3185 20 1 13.8388 -8.3202 -2.6516 21 1 15.6450 -7.6376 -1.1840 22 1 13.6482 -8.6541 -0.2573 23 6 9.2293 -2.8273 0.4324 24 6 8.5912 -1.4445 0.5752 25 7 4.5939 -1.1971 -0.1241 26 6 3.2769 -1.1950 -0.1238 27 1 2.7611 2.1456 0.2219 28 1 5.2387 2.0576 0.2217 29 1 6.5854 -2.1773 0.2913 30 1 8.1130 -0.9902 -2.0696 31 1 6.4950 -1.7279 -2.1456 32 1 8.2452 -3.3466 -2.8293 33 1 7.4362 -3.8740 -1.3338 34 1 10.0990 -2.3901 -1.4893 35 1 9.4947 -5.2430 -1.3412 36 1 15.1067 -5.1178 -0.8758 37 1 8.5720 -3.5776 0.8717 38 1 10.1898 -2.8397 0.9477 39 1 8.4399 -1.2214 1.6314 40 1 9.2489 -0.6944 0.1360 41 1 2.7406 -2.1274 -0.2204 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000364300436.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:45:03 Heat of formation + Delta-G solvation = -25.253062 kcal Electronic energy + Delta-G solvation = -24814.423104 eV Core-core repulsion = 21080.179464 eV Total energy + Delta-G solvation = -3734.243640 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.137 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.20866 -39.33014 -37.90068 -36.82880 -36.01752 -33.15756 -32.85243 -32.15901 -31.15800 -30.65450 -28.41243 -26.00908 -24.65829 -24.33442 -22.58132 -21.90130 -19.90926 -19.53319 -19.50943 -18.69068 -17.48591 -17.12893 -15.90664 -15.50737 -15.32638 -15.15870 -14.65791 -14.52020 -14.45604 -14.06376 -13.94136 -13.74561 -13.41913 -13.25978 -13.11022 -12.78573 -12.64167 -12.42450 -12.20520 -12.03922 -11.59257 -11.45431 -11.05655 -10.98910 -10.94041 -10.82974 -10.50265 -10.45324 -10.26837 -10.10906 -10.04478 -9.92129 -8.90024 -8.84683 -7.61392 -7.50005 -6.18349 -4.64028 0.22688 0.67821 2.23546 2.55143 2.65851 3.15449 3.20562 3.22232 3.40758 3.42291 3.77458 4.10183 4.21274 4.49985 4.57800 4.59438 4.74672 4.77982 4.78994 5.14355 5.20840 5.29826 5.34192 5.37699 5.48007 5.56987 5.61525 5.64828 5.80158 5.90521 5.94459 6.04258 6.12179 6.18309 6.30712 6.40946 6.72458 6.80004 6.93779 7.06390 7.33279 7.43300 7.94039 8.12114 8.33562 9.02676 9.54742 10.60358 10.79257 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.038094 B = 0.002170 C = 0.002096 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 734.850732 B =12898.380361 C =13356.194761 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.420 5.420 2 C 0.265 3.735 3 C -0.135 4.135 4 C 0.008 3.992 5 C -0.195 4.195 6 C 0.360 3.640 7 O -0.292 6.292 8 C 0.089 3.911 9 C -0.127 4.127 10 C -0.120 4.120 11 C 0.154 3.846 12 N -0.763 5.763 13 C 0.555 3.445 14 O -0.580 6.580 15 C -0.547 4.547 16 H 0.066 0.934 17 C 0.088 3.912 18 N -0.768 5.768 19 Si 0.907 3.093 20 H -0.268 1.268 21 H -0.281 1.281 22 H -0.268 1.268 23 C -0.123 4.123 24 C -0.112 4.112 25 N -0.536 5.536 26 C 0.203 3.797 27 H 0.150 0.850 28 H 0.153 0.847 29 H 0.093 0.907 30 H 0.071 0.929 31 H 0.066 0.934 32 H 0.070 0.930 33 H 0.065 0.935 34 H 0.076 0.924 35 H 0.379 0.621 36 H 0.268 0.732 37 H 0.058 0.942 38 H 0.079 0.921 39 H 0.067 0.933 40 H 0.074 0.926 41 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.157 9.830 1.860 21.612 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.096 5.096 2 C -0.051 4.051 3 C -0.141 4.141 4 C -0.019 4.019 5 C -0.216 4.216 6 C 0.180 3.820 7 O -0.198 6.198 8 C 0.034 3.966 9 C -0.166 4.166 10 C -0.158 4.158 11 C 0.047 3.953 12 N -0.417 5.417 13 C 0.359 3.641 14 O -0.463 6.463 15 C -0.584 4.584 16 H 0.084 0.916 17 C -0.132 4.132 18 N -0.397 5.397 19 Si 0.732 3.268 20 H -0.193 1.193 21 H -0.206 1.206 22 H -0.193 1.193 23 C -0.162 4.162 24 C -0.150 4.150 25 N -0.259 5.259 26 C 0.042 3.958 27 H 0.168 0.832 28 H 0.171 0.829 29 H 0.111 0.889 30 H 0.090 0.910 31 H 0.085 0.915 32 H 0.089 0.911 33 H 0.084 0.916 34 H 0.095 0.905 35 H 0.211 0.789 36 H 0.079 0.921 37 H 0.077 0.923 38 H 0.098 0.902 39 H 0.086 0.914 40 H 0.093 0.907 41 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -19.453 10.061 1.962 21.988 hybrid contribution 0.065 -0.641 -0.100 0.652 sum -19.389 9.419 1.862 21.636 Atomic orbital electron populations 1.81296 1.11888 1.06859 1.09511 1.25308 0.92138 0.94173 0.93500 1.16811 0.85675 0.96196 1.15432 1.21408 0.92834 0.97426 0.90261 1.21048 0.94111 0.97613 1.08783 1.20214 0.85102 0.89587 0.87054 1.86322 1.14149 1.34643 1.84637 1.22692 0.94740 0.81979 0.97219 1.21882 1.01289 0.98346 0.95061 1.21738 0.96749 0.95875 1.01422 1.20515 0.92512 0.88878 0.93365 1.46183 1.08505 1.06549 1.80480 1.18197 0.78981 0.90382 0.76501 1.90595 1.60896 1.40949 1.53851 1.20862 0.91930 0.92651 1.52921 0.91556 1.25697 0.97321 0.97474 0.92710 1.70011 1.05239 1.29698 1.34724 0.86453 0.78067 0.82882 0.79440 1.19324 1.20602 1.19327 1.21919 1.01214 0.94115 0.98927 1.21622 0.93782 0.99563 1.00083 1.67466 1.08733 1.29551 1.20177 1.22624 0.88063 0.96816 0.88294 0.83234 0.82897 0.88885 0.91022 0.91527 0.91088 0.91628 0.90543 0.78941 0.92101 0.92284 0.90219 0.91434 0.90715 0.81335 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.42 -4.41 18.54 41.84 0.78 -3.64 16 2 C 0.26 2.11 15.37 -22.47 -0.35 1.76 16 3 C -0.13 -0.86 5.75 -106.70 -0.61 -1.48 16 4 C 0.01 0.04 9.90 -38.90 -0.39 -0.34 16 5 C -0.19 -1.28 10.02 -39.34 -0.39 -1.68 16 6 C 0.36 3.36 7.46 -16.98 -0.13 3.23 16 7 O -0.29 -3.23 9.75 -18.33 -0.18 -3.40 16 8 C 0.09 1.04 2.37 -26.73 -0.06 0.98 16 9 C -0.13 -1.51 5.54 -26.73 -0.15 -1.66 16 10 C -0.12 -1.61 5.39 -26.73 -0.14 -1.76 16 11 C 0.15 2.74 2.45 -67.93 -0.17 2.57 16 12 N -0.76 -16.24 5.07 -55.22 -0.28 -16.52 16 13 C 0.56 15.31 7.71 -12.98 -0.10 15.21 16 14 O -0.58 -18.21 14.68 5.20 0.08 -18.13 16 15 C -0.55 -15.15 9.54 -35.63 -0.34 -15.49 16 16 H 0.07 1.68 7.85 -52.49 -0.41 1.27 16 17 C 0.09 2.42 5.50 -17.37 -0.10 2.32 16 18 N -0.77 -22.74 11.83 55.55 0.66 -22.09 16 19 Si 0.91 19.91 29.56 -169.99 -5.02 14.89 16 20 H -0.27 -5.74 7.11 56.52 0.40 -5.34 16 21 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 22 H -0.27 -5.74 7.11 56.52 0.40 -5.34 16 23 C -0.12 -1.99 5.49 -26.76 -0.15 -2.14 16 24 C -0.11 -1.48 5.57 -26.76 -0.15 -1.63 16 25 N -0.54 -4.93 8.61 -12.95 -0.11 -5.04 16 26 C 0.20 1.40 10.92 -17.12 -0.19 1.21 16 27 H 0.15 0.40 8.06 -52.48 -0.42 -0.02 16 28 H 0.15 0.75 8.06 -52.49 -0.42 0.32 16 29 H 0.09 1.09 6.97 -51.93 -0.36 0.73 16 30 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 31 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 32 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 33 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 34 H 0.08 1.58 7.57 -51.93 -0.39 1.19 16 35 H 0.38 7.11 8.58 -40.82 -0.35 6.76 16 36 H 0.27 7.24 8.29 -40.82 -0.34 6.90 16 37 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 38 H 0.08 1.56 8.14 -51.93 -0.42 1.14 16 39 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 40 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 41 H 0.17 0.78 8.06 -52.49 -0.42 0.36 16 LS Contribution 356.93 15.07 5.38 5.38 Total: -1.00 -34.51 356.93 -7.42 -41.93 By element: Atomic # 1 Polarization: 10.81 SS G_CDS: -5.30 Total: 5.51 kcal Atomic # 6 Polarization: 4.52 SS G_CDS: -3.41 Total: 1.11 kcal Atomic # 7 Polarization: -48.33 SS G_CDS: 1.04 Total: -47.28 kcal Atomic # 8 Polarization: -21.43 SS G_CDS: -0.10 Total: -21.53 kcal Atomic # 14 Polarization: 19.91 SS G_CDS: -5.02 Total: 14.89 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -34.51 -7.42 -41.93 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000364300436.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.674 kcal (2) G-P(sol) polarization free energy of solvation -34.511 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.838 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.416 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.927 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.253 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds