Wall clock time and date at job start Tue Mar 31 2020 10:45:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13600 * 1 3 3 C 1.43209 * 179.97438 * 2 1 4 4 C 1.40298 * 120.50500 * 185.88522 * 3 2 1 5 5 C 1.37982 * 118.35340 * 179.75079 * 4 3 2 6 6 C 1.39138 * 119.26873 * 0.51266 * 5 4 3 7 7 O 1.35546 * 119.52043 * 179.74721 * 6 5 4 8 8 C 1.42900 * 116.99944 * 179.72960 * 7 6 5 9 9 C 1.53006 * 109.46976 * 90.00179 * 8 7 6 10 10 C 1.52997 * 109.47127 * 179.97438 * 9 8 7 11 11 C 1.53000 * 109.47060 * 300.00449 * 10 9 8 12 12 N 1.46499 * 109.46840 * 180.02562 * 11 10 9 13 13 C 1.34782 * 120.00074 * 155.00031 * 12 11 10 14 14 O 1.21689 * 119.99621 * 359.97438 * 13 12 11 15 15 C 1.46375 * 120.00180 * 179.97438 * 13 12 11 16 16 H 1.08000 * 119.99644 * 359.97438 * 15 13 12 17 17 C 1.40044 * 120.00288 * 179.97438 * 15 13 12 18 18 N 1.30675 * 119.99573 * 359.97438 * 17 15 13 19 19 Si 1.86798 * 120.00330 * 179.97438 * 17 15 13 20 20 H 1.48503 * 109.47170 * 59.99901 * 19 17 15 21 21 H 1.48495 * 109.47273 * 180.02562 * 19 17 15 22 22 H 1.48498 * 109.46945 * 300.00408 * 19 17 15 23 23 C 1.52996 * 109.47328 * 60.00126 * 11 10 9 24 24 C 1.52997 * 109.47084 * 210.00118 * 8 7 6 25 25 N 1.32383 * 120.95854 * 359.47981 * 6 5 4 26 26 C 1.31694 * 121.80723 * 0.26741 * 25 6 5 27 27 H 1.08004 * 120.81994 * 0.04770 * 4 3 2 28 28 H 1.07995 * 120.36479 * 180.26328 * 5 4 3 29 29 H 1.09001 * 109.47130 * 330.00410 * 8 7 6 30 30 H 1.08998 * 109.46505 * 59.99598 * 9 8 7 31 31 H 1.08996 * 109.46884 * 300.00479 * 9 8 7 32 32 H 1.09002 * 109.47153 * 180.02562 * 10 9 8 33 33 H 1.09001 * 109.46832 * 60.00321 * 10 9 8 34 34 H 1.09001 * 109.47194 * 299.99650 * 11 10 9 35 35 H 0.97002 * 120.00427 * 334.99530 * 12 11 10 36 36 H 0.97003 * 119.99389 * 179.97438 * 18 17 15 37 37 H 1.08992 * 109.47554 * 59.99639 * 23 11 10 38 38 H 1.09004 * 109.47108 * 179.97438 * 23 11 10 39 39 H 1.09002 * 109.47045 * 60.00217 * 24 8 7 40 40 H 1.09001 * 109.47375 * 300.00142 * 24 8 7 41 41 H 1.07995 * 119.68552 * 179.97438 * 26 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5681 0.0006 0.0000 4 6 3.2797 1.2034 0.1239 5 6 4.6586 1.1519 0.1239 6 6 5.2934 -0.0791 -0.0088 7 8 6.6477 -0.1350 -0.0147 8 6 7.2431 -1.4272 -0.1480 9 6 7.4555 -1.7404 -1.6305 10 6 8.0935 -3.1236 -1.7732 11 6 9.4417 -3.1404 -1.0500 12 7 10.0529 -4.4647 -1.1872 13 6 11.3908 -4.6019 -1.0993 14 8 12.0911 -3.6255 -0.9065 15 6 12.0015 -5.9252 -1.2358 16 1 11.3799 -6.7917 -1.4065 17 6 13.3917 -6.0676 -1.1450 18 7 14.1438 -5.0190 -0.9390 19 14 14.1709 -7.7564 -1.3185 20 1 13.8388 -8.3202 -2.6516 21 1 15.6450 -7.6376 -1.1840 22 1 13.6482 -8.6541 -0.2573 23 6 9.2293 -2.8273 0.4324 24 6 8.5912 -1.4445 0.5752 25 7 4.5939 -1.1971 -0.1241 26 6 3.2769 -1.1950 -0.1238 27 1 2.7611 2.1456 0.2219 28 1 5.2387 2.0576 0.2217 29 1 6.5854 -2.1773 0.2913 30 1 8.1130 -0.9902 -2.0696 31 1 6.4950 -1.7279 -2.1456 32 1 8.2452 -3.3466 -2.8293 33 1 7.4362 -3.8740 -1.3338 34 1 10.0990 -2.3901 -1.4893 35 1 9.4947 -5.2430 -1.3412 36 1 15.1067 -5.1178 -0.8758 37 1 8.5720 -3.5776 0.8717 38 1 10.1898 -2.8397 0.9477 39 1 8.4399 -1.2214 1.6314 40 1 9.2489 -0.6944 0.1360 41 1 2.7406 -2.1274 -0.2204 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000364300436.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:45:03 Heat of formation + Delta-G solvation = -49.761537 kcal Electronic energy + Delta-G solvation = -24815.485871 eV Core-core repulsion = 21080.179464 eV Total energy + Delta-G solvation = -3735.306407 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.137 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.86722 -40.39148 -39.29272 -37.84743 -37.28577 -34.73448 -34.01299 -33.68607 -31.93330 -31.78326 -29.86447 -27.89645 -25.29919 -25.03873 -23.74158 -23.12740 -21.45267 -21.04367 -20.09971 -19.47075 -19.09437 -18.09879 -17.41047 -16.88491 -16.58509 -15.99952 -15.78675 -15.64507 -15.33097 -15.13377 -15.03434 -14.52895 -14.47523 -14.32500 -14.16071 -14.03530 -13.93313 -13.63508 -13.24294 -13.19511 -13.18321 -12.77549 -12.63184 -12.55429 -12.42636 -12.11148 -12.05815 -11.98749 -11.36901 -11.13435 -10.99419 -10.88942 -10.66135 -9.79849 -9.53984 -9.38776 -8.25587 -6.81811 -0.34834 0.20478 1.41451 1.44758 1.56126 1.60612 1.91265 1.93065 2.26655 2.51137 2.81740 2.84783 3.13119 3.22060 3.61631 3.67809 3.76720 3.78632 3.97387 4.10844 4.13952 4.24537 4.26285 4.40090 4.47022 4.49897 4.63653 4.75687 4.80403 4.87285 4.99622 5.03490 5.04957 5.14722 5.15729 5.31393 5.34630 5.40491 5.44983 5.93272 6.19630 6.29545 6.37171 6.43503 6.74751 6.90315 7.62411 8.54634 8.72002 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.038094 B = 0.002170 C = 0.002096 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 734.850732 B =12898.380361 C =13356.194761 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.465 5.465 2 C 0.292 3.708 3 C -0.131 4.131 4 C 0.022 3.978 5 C -0.191 4.191 6 C 0.336 3.664 7 O -0.302 6.302 8 C 0.101 3.899 9 C -0.120 4.120 10 C -0.106 4.106 11 C 0.151 3.849 12 N -0.751 5.751 13 C 0.540 3.460 14 O -0.630 6.630 15 C -0.575 4.575 16 H 0.087 0.913 17 C 0.028 3.972 18 N -0.822 5.822 19 Si 0.996 3.004 20 H -0.255 1.255 21 H -0.276 1.276 22 H -0.255 1.255 23 C -0.114 4.114 24 C -0.105 4.105 25 N -0.555 5.555 26 C 0.201 3.799 27 H 0.180 0.820 28 H 0.170 0.830 29 H 0.099 0.901 30 H 0.062 0.938 31 H 0.083 0.917 32 H 0.072 0.928 33 H 0.086 0.914 34 H 0.039 0.961 35 H 0.394 0.606 36 H 0.273 0.727 37 H 0.075 0.925 38 H 0.035 0.965 39 H 0.081 0.919 40 H 0.062 0.938 41 H 0.189 0.811 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.307 9.084 1.731 23.227 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.141 5.141 2 C -0.023 4.023 3 C -0.137 4.137 4 C -0.005 4.005 5 C -0.211 4.211 6 C 0.158 3.842 7 O -0.209 6.209 8 C 0.045 3.955 9 C -0.158 4.158 10 C -0.144 4.144 11 C 0.045 3.955 12 N -0.404 5.404 13 C 0.344 3.656 14 O -0.517 6.517 15 C -0.612 4.612 16 H 0.105 0.895 17 C -0.187 4.187 18 N -0.452 5.452 19 Si 0.815 3.185 20 H -0.179 1.179 21 H -0.201 1.201 22 H -0.179 1.179 23 C -0.153 4.153 24 C -0.144 4.144 25 N -0.278 5.278 26 C 0.041 3.959 27 H 0.197 0.803 28 H 0.188 0.812 29 H 0.117 0.883 30 H 0.081 0.919 31 H 0.102 0.898 32 H 0.090 0.910 33 H 0.104 0.896 34 H 0.057 0.943 35 H 0.228 0.772 36 H 0.083 0.917 37 H 0.094 0.906 38 H 0.054 0.946 39 H 0.099 0.901 40 H 0.081 0.919 41 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges -21.687 9.312 1.827 23.672 hybrid contribution 0.631 -0.320 -0.047 0.709 sum -21.056 8.992 1.780 22.965 Atomic orbital electron populations 1.81336 1.13239 1.08362 1.11177 1.25360 0.92073 0.92772 0.92126 1.16832 0.84741 0.96741 1.15403 1.21727 0.92271 0.98197 0.88266 1.21257 0.94615 0.97259 1.08007 1.20510 0.84379 0.90758 0.88546 1.86284 1.15539 1.33624 1.85416 1.22377 0.93701 0.82929 0.96501 1.21808 1.01610 0.96822 0.95591 1.21616 0.94179 0.97748 1.00877 1.20684 0.93901 0.85989 0.94905 1.45862 1.06970 1.08629 1.78985 1.18547 0.80785 0.90122 0.76168 1.90551 1.62774 1.42363 1.56061 1.21427 0.93107 0.93399 1.53273 0.89525 1.26952 0.97785 1.02508 0.91444 1.70190 1.05835 1.33045 1.36091 0.85100 0.76822 0.76359 0.80182 1.17882 1.20098 1.17881 1.21739 0.99634 0.96758 0.97180 1.21481 0.94622 0.96994 1.01255 1.67420 1.09614 1.29827 1.20927 1.22923 0.87444 0.97842 0.87662 0.80250 0.81210 0.88312 0.91881 0.89816 0.90974 0.89561 0.94316 0.77198 0.91710 0.90608 0.94611 0.90085 0.91930 0.79440 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.46 -9.10 18.54 19.01 0.35 -8.75 16 2 C 0.29 4.00 15.37 88.33 1.36 5.36 16 3 C -0.13 -1.30 5.75 -21.21 -0.12 -1.42 16 4 C 0.02 0.16 9.90 22.71 0.22 0.38 16 5 C -0.19 -1.96 10.02 22.43 0.22 -1.74 16 6 C 0.34 5.53 7.46 84.83 0.63 6.16 16 7 O -0.30 -6.21 9.75 -88.51 -0.86 -7.08 16 8 C 0.10 2.23 2.37 30.60 0.07 2.30 16 9 C -0.12 -2.70 5.54 30.60 0.17 -2.53 16 10 C -0.11 -2.75 5.39 30.59 0.16 -2.58 16 11 C 0.15 5.53 2.45 44.99 0.11 5.64 16 12 N -0.75 -32.68 5.07 -446.82 -2.27 -34.95 16 13 C 0.54 30.93 7.71 86.36 0.67 31.59 16 14 O -0.63 -41.89 14.68 -4.31 -0.06 -41.96 16 15 C -0.58 -32.36 9.54 24.83 0.24 -32.13 16 16 H 0.09 4.34 7.85 -2.91 -0.02 4.32 16 17 C 0.03 1.56 5.50 85.30 0.47 2.03 16 18 N -0.82 -50.38 11.83 21.83 0.26 -50.12 16 19 Si 1.00 40.81 29.56 68.60 2.03 42.84 16 20 H -0.25 -9.81 7.11 99.48 0.71 -9.10 16 21 H -0.28 -10.97 7.11 99.48 0.71 -10.27 16 22 H -0.25 -9.81 7.11 99.48 0.71 -9.10 16 23 C -0.11 -3.82 5.49 30.58 0.17 -3.65 16 24 C -0.11 -2.79 5.57 30.58 0.17 -2.62 16 25 N -0.55 -8.86 8.61 -307.77 -2.65 -11.51 16 26 C 0.20 2.25 10.92 85.03 0.93 3.18 16 27 H 0.18 0.21 8.06 -2.91 -0.02 0.18 16 28 H 0.17 1.14 8.06 -2.91 -0.02 1.11 16 29 H 0.10 2.11 6.97 -2.39 -0.02 2.09 16 30 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 31 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 32 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 33 H 0.09 1.92 8.14 -2.39 -0.02 1.90 16 34 H 0.04 1.71 7.57 -2.39 -0.02 1.69 16 35 H 0.39 14.63 8.58 -92.71 -0.80 13.84 16 36 H 0.27 15.22 8.29 -92.71 -0.77 14.45 16 37 H 0.08 2.25 8.14 -2.39 -0.02 2.23 16 38 H 0.03 1.49 8.14 -2.38 -0.02 1.47 16 39 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 40 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 41 H 0.19 1.23 8.06 -2.91 -0.02 1.20 16 Total: -1.00 -79.37 356.93 2.54 -76.83 By element: Atomic # 1 Polarization: 24.44 SS G_CDS: 0.27 Total: 24.71 kcal Atomic # 6 Polarization: 4.51 SS G_CDS: 5.47 Total: 9.98 kcal Atomic # 7 Polarization: -101.02 SS G_CDS: -4.31 Total: -105.32 kcal Atomic # 8 Polarization: -48.11 SS G_CDS: -0.93 Total: -49.03 kcal Atomic # 14 Polarization: 40.81 SS G_CDS: 2.03 Total: 42.84 kcal Total: -79.37 2.54 -76.83 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000364300436.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.068 kcal (2) G-P(sol) polarization free energy of solvation -79.372 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.304 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.542 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.830 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.762 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds