Wall clock time and date at job start Tue Mar 31 2020 10:56:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86798 * 119.99795 * 2 1 4 4 H 1.48500 * 109.47326 * 270.00190 * 3 2 1 5 5 H 1.48501 * 109.47362 * 30.00038 * 3 2 1 6 6 H 1.48506 * 109.47075 * 150.00187 * 3 2 1 7 7 C 1.38808 * 119.99976 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99836 * 197.36304 * 7 2 1 9 9 N 1.36937 * 120.00093 * 17.36720 * 7 2 1 10 10 C 1.46927 * 120.62955 * 207.68401 * 9 7 2 11 11 C 1.53193 * 108.77474 * 233.58567 * 10 9 7 12 12 C 1.53037 * 109.31458 * 305.36799 * 11 10 9 13 13 N 1.46503 * 109.46096 * 181.38654 * 12 11 10 14 14 C 1.39176 * 119.99858 * 155.00155 * 13 12 11 15 15 C 1.39497 * 120.86518 * 359.97438 * 14 13 12 16 16 C 1.37871 * 119.06714 * 179.73158 * 15 14 13 17 17 N 1.32011 * 120.84441 * 359.97438 * 16 15 14 18 18 C 1.31987 * 121.91068 * 0.02562 * 17 16 15 19 19 C 1.50700 * 119.58059 * 179.97438 * 18 17 16 20 20 F 1.39895 * 109.46857 * 5.00102 * 19 18 17 21 21 F 1.39906 * 109.46738 * 125.00148 * 19 18 17 22 22 F 1.39897 * 109.47038 * 244.99889 * 19 18 17 23 23 C 1.37915 * 120.84154 * 359.97438 * 18 17 16 24 24 C 1.53041 * 109.53940 * 61.36080 * 12 11 10 25 25 C 1.46926 * 120.62960 * 27.66214 * 9 7 2 26 26 H 0.97007 * 120.00229 * 359.97438 * 1 2 3 27 27 H 1.09000 * 109.58398 * 113.80178 * 10 9 7 28 28 H 1.08992 * 109.70373 * 353.43958 * 10 9 7 29 29 H 1.08993 * 109.49871 * 185.41441 * 11 10 9 30 30 H 1.09000 * 109.49993 * 65.31478 * 11 10 9 31 31 H 1.08999 * 109.46179 * 301.35632 * 12 11 10 32 32 H 0.96993 * 119.99684 * 334.99580 * 13 12 11 33 33 H 1.08000 * 120.46672 * 359.70644 * 15 14 13 34 34 H 1.07993 * 119.57973 * 179.97438 * 16 15 14 35 35 H 1.07997 * 120.47083 * 180.02562 * 23 18 17 36 36 H 1.09005 * 109.49696 * 58.59278 * 24 12 11 37 37 H 1.09002 * 109.49585 * 178.68044 * 24 12 11 38 38 H 1.09002 * 109.58653 * 246.19562 * 25 9 7 39 39 H 1.08996 * 109.58761 * 6.62870 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5478 1.4402 0.7000 7 6 2.0102 -1.2021 -0.0005 8 1 3.0533 -1.2235 0.2786 9 7 1.3724 -2.3608 -0.3550 10 6 1.8193 -3.6548 0.1786 11 6 2.0743 -4.6094 -0.9921 12 6 0.8186 -4.6886 -1.8633 13 7 1.0475 -5.6262 -2.9655 14 6 -0.0304 -6.2661 -3.5701 15 6 -1.3362 -6.0284 -3.1408 16 6 -2.3769 -6.6782 -3.7698 17 7 -2.1495 -7.5146 -4.7655 18 6 -0.9290 -7.7659 -5.2006 19 6 -0.7297 -8.7308 -6.3410 20 9 -1.9754 -9.1324 -6.8350 21 9 -0.0036 -8.1048 -7.3599 22 9 -0.0251 -9.8506 -5.8865 23 6 0.1663 -7.1567 -4.6250 24 6 0.5006 -3.3031 -2.4302 25 6 0.2278 -2.3337 -1.2758 26 1 -0.4851 0.8401 0.0004 27 1 1.0469 -4.0692 0.8264 28 1 2.7394 -3.5198 0.7470 29 1 2.3135 -5.6008 -0.6077 30 1 2.9080 -4.2390 -1.5887 31 1 -0.0206 -5.0352 -1.2602 32 1 1.9504 -5.8009 -3.2739 33 1 -1.5293 -5.3454 -2.3268 34 1 -3.3910 -6.5007 -3.4439 35 1 1.1623 -7.3664 -4.9861 36 1 1.3492 -2.9450 -3.0132 37 1 -0.3802 -3.3649 -3.0694 38 1 -0.6744 -2.6405 -0.7466 39 1 0.0985 -1.3252 -1.6685 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000394219782.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:56:04 Heat of formation + Delta-G solvation = -92.623644 kcal Electronic energy + Delta-G solvation = -26068.595306 eV Core-core repulsion = 21789.573518 eV Total energy + Delta-G solvation = -4279.021788 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.125 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -50.25246 -47.79894 -47.69224 -40.51101 -38.26686 -35.69906 -32.91440 -32.21226 -30.93895 -30.16073 -28.91770 -26.72094 -24.99053 -23.71805 -22.64186 -22.31258 -21.35188 -19.57512 -18.69721 -18.64531 -18.52259 -17.11643 -16.72031 -16.28969 -15.76484 -15.08170 -14.77285 -14.69199 -14.40675 -14.28099 -14.17607 -14.13608 -13.98359 -13.86195 -13.85181 -13.70602 -13.21384 -13.11047 -12.90624 -12.42776 -11.80361 -11.65743 -11.56321 -11.19718 -10.86040 -10.83744 -10.50412 -10.35431 -10.08300 -9.85548 -9.76012 -9.72726 -9.52798 -8.59784 -7.90372 -6.83650 -5.90956 -3.33898 0.69294 1.29911 2.37059 3.17206 3.31061 3.38312 3.39090 3.45228 3.46768 3.93102 4.29880 4.39569 4.52128 4.78892 4.89278 4.99962 5.05682 5.23950 5.29090 5.40069 5.41483 5.51463 5.59605 5.81796 5.86315 6.05610 6.13145 6.26606 6.33807 6.42476 6.45751 6.57660 6.74618 7.09796 7.18005 7.49356 7.51755 7.68750 7.69338 8.32162 9.08401 9.71190 10.26424 11.17748 Molecular weight = 315.13amu Principal moments of inertia in cm(-1) A = 0.029681 B = 0.002656 C = 0.002618 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 943.124300 B =10540.185196 C =10690.634296 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.004 3.996 3 Si 0.903 3.097 4 H -0.287 1.287 5 H -0.290 1.290 6 H -0.279 1.279 7 C -0.257 4.257 8 H 0.067 0.933 9 N -0.592 5.592 10 C 0.149 3.851 11 C -0.139 4.139 12 C 0.151 3.849 13 N -0.720 5.720 14 C 0.265 3.735 15 C -0.223 4.223 16 C 0.143 3.857 17 N -0.497 5.497 18 C 0.076 3.924 19 C 0.522 3.478 20 F -0.164 7.164 21 F -0.174 7.174 22 F -0.175 7.175 23 C -0.208 4.208 24 C -0.153 4.153 25 C 0.172 3.828 26 H 0.255 0.745 27 H 0.021 0.979 28 H 0.060 0.940 29 H 0.057 0.943 30 H 0.064 0.936 31 H 0.077 0.923 32 H 0.401 0.599 33 H 0.146 0.854 34 H 0.166 0.834 35 H 0.138 0.862 36 H 0.059 0.941 37 H 0.052 0.948 38 H 0.020 0.980 39 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.797 -15.352 -8.732 17.680 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.195 4.195 3 Si 0.733 3.267 4 H -0.214 1.214 5 H -0.217 1.217 6 H -0.204 1.204 7 C -0.387 4.387 8 H 0.085 0.915 9 N -0.315 5.315 10 C 0.021 3.979 11 C -0.179 4.179 12 C 0.047 3.953 13 N -0.345 5.345 14 C 0.149 3.851 15 C -0.248 4.248 16 C -0.012 4.012 17 N -0.210 5.210 18 C -0.063 4.063 19 C 0.466 3.534 20 F -0.145 7.145 21 F -0.156 7.156 22 F -0.156 7.156 23 C -0.235 4.235 24 C -0.193 4.193 25 C 0.046 3.954 26 H 0.065 0.935 27 H 0.038 0.962 28 H 0.078 0.922 29 H 0.076 0.924 30 H 0.083 0.917 31 H 0.095 0.905 32 H 0.236 0.764 33 H 0.164 0.836 34 H 0.183 0.817 35 H 0.156 0.844 36 H 0.078 0.922 37 H 0.071 0.929 38 H 0.038 0.962 39 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -1.631 -15.480 -8.943 17.951 hybrid contribution 1.534 1.107 0.058 1.892 sum -0.098 -14.373 -8.885 16.898 Atomic orbital electron populations 1.70018 1.05277 1.25719 1.53518 1.25046 0.95308 0.98518 1.00599 0.86279 0.79140 0.83523 0.77750 1.21386 1.21675 1.20390 1.19184 0.92788 0.84799 1.41905 0.91550 1.44095 1.35825 1.01427 1.50113 1.20839 0.98172 0.86654 0.92203 1.22332 0.96567 0.99960 0.99047 1.21193 0.99069 0.88720 0.86305 1.45232 1.06255 1.45821 1.37168 1.17936 0.89058 0.88689 0.89450 1.21960 0.91547 1.06112 1.05160 1.22460 0.99519 0.89772 0.89473 1.67227 1.21276 1.17898 1.14626 1.20433 0.91232 0.98026 0.96629 1.17961 0.74239 0.79437 0.81718 1.93218 1.41557 1.91161 1.88573 1.93221 1.78177 1.82349 1.61809 1.93217 1.79244 1.54172 1.88981 1.21079 0.99823 1.02475 1.00121 1.22699 1.00799 0.95189 1.00654 1.20781 0.88676 0.98395 0.87551 0.93484 0.96152 0.92184 0.92439 0.91692 0.90479 0.76392 0.83600 0.81717 0.84382 0.92232 0.92910 0.96171 0.89039 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.96 11.19 55.49 0.62 -24.34 16 2 C 0.00 0.11 4.91 -17.43 -0.09 0.03 16 3 Si 0.90 20.86 29.59 -169.99 -5.03 15.83 16 4 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 5 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 6 H -0.28 -6.31 7.11 56.52 0.40 -5.90 16 7 C -0.26 -6.67 9.59 -15.06 -0.14 -6.81 16 8 H 0.07 1.70 7.89 -52.48 -0.41 1.28 16 9 N -0.59 -13.63 2.99 -172.33 -0.52 -14.15 16 10 C 0.15 2.77 6.51 -3.71 -0.02 2.74 16 11 C -0.14 -2.03 5.55 -26.61 -0.15 -2.18 16 12 C 0.15 2.12 2.13 -67.89 -0.14 1.98 16 13 N -0.72 -8.49 5.24 -51.96 -0.27 -8.76 16 14 C 0.26 3.20 6.68 -83.60 -0.56 2.64 16 15 C -0.22 -2.64 8.95 -39.25 -0.35 -2.99 16 16 C 0.14 1.64 11.17 -17.61 -0.20 1.45 16 17 N -0.50 -6.60 9.74 -9.57 -0.09 -6.70 16 18 C 0.08 0.96 6.26 -82.64 -0.52 0.44 16 19 C 0.52 6.26 3.31 36.01 0.12 6.38 16 20 F -0.16 -2.11 16.85 2.25 0.04 -2.07 16 21 F -0.17 -2.04 17.16 2.25 0.04 -2.00 16 22 F -0.17 -2.03 17.28 2.25 0.04 -1.99 16 23 C -0.21 -2.41 9.49 -39.25 -0.37 -2.79 16 24 C -0.15 -2.59 5.64 -26.61 -0.15 -2.74 16 25 C 0.17 3.74 5.31 -3.71 -0.02 3.72 16 26 H 0.26 6.86 8.31 -40.82 -0.34 6.52 16 27 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 28 H 0.06 1.10 7.94 -51.93 -0.41 0.69 16 29 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 30 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 31 H 0.08 1.10 6.54 -51.93 -0.34 0.76 16 32 H 0.40 4.08 8.63 -40.82 -0.35 3.73 16 33 H 0.15 1.68 6.38 -52.49 -0.33 1.35 16 34 H 0.17 1.41 8.06 -52.49 -0.42 0.99 16 35 H 0.14 1.33 8.06 -52.49 -0.42 0.90 16 36 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 37 H 0.05 0.84 7.84 -51.93 -0.41 0.43 16 38 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 39 H 0.09 2.29 6.04 -51.93 -0.31 1.98 16 LS Contribution 333.24 15.07 5.02 5.02 Total: -1.00 -28.27 333.24 -7.41 -35.68 By element: Atomic # 1 Polarization: 6.25 SS G_CDS: -4.67 Total: 1.58 kcal Atomic # 6 Polarization: 4.47 SS G_CDS: -2.59 Total: 1.87 kcal Atomic # 7 Polarization: -53.68 SS G_CDS: -0.26 Total: -53.94 kcal Atomic # 9 Polarization: -6.17 SS G_CDS: 0.12 Total: -6.05 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.03 Total: 15.83 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -28.27 -7.41 -35.68 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000394219782.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.945 kcal (2) G-P(sol) polarization free energy of solvation -28.265 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.210 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.413 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.679 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.624 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds