Wall clock time and date at job start Tue Mar 31 2020 10:56:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86798 * 119.99795 * 2 1 4 4 H 1.48500 * 109.47326 * 270.00190 * 3 2 1 5 5 H 1.48501 * 109.47362 * 30.00038 * 3 2 1 6 6 H 1.48506 * 109.47075 * 150.00187 * 3 2 1 7 7 C 1.38808 * 119.99976 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99836 * 197.36304 * 7 2 1 9 9 N 1.36937 * 120.00093 * 17.36720 * 7 2 1 10 10 C 1.46927 * 120.62955 * 207.68401 * 9 7 2 11 11 C 1.53193 * 108.77474 * 233.58567 * 10 9 7 12 12 C 1.53037 * 109.31458 * 305.36799 * 11 10 9 13 13 N 1.46503 * 109.46096 * 181.38654 * 12 11 10 14 14 C 1.39176 * 119.99858 * 155.00155 * 13 12 11 15 15 C 1.39497 * 120.86518 * 359.97438 * 14 13 12 16 16 C 1.37871 * 119.06714 * 179.73158 * 15 14 13 17 17 N 1.32011 * 120.84441 * 359.97438 * 16 15 14 18 18 C 1.31987 * 121.91068 * 0.02562 * 17 16 15 19 19 C 1.50700 * 119.58059 * 179.97438 * 18 17 16 20 20 F 1.39895 * 109.46857 * 5.00102 * 19 18 17 21 21 F 1.39906 * 109.46738 * 125.00148 * 19 18 17 22 22 F 1.39897 * 109.47038 * 244.99889 * 19 18 17 23 23 C 1.37915 * 120.84154 * 359.97438 * 18 17 16 24 24 C 1.53041 * 109.53940 * 61.36080 * 12 11 10 25 25 C 1.46926 * 120.62960 * 27.66214 * 9 7 2 26 26 H 0.97007 * 120.00229 * 359.97438 * 1 2 3 27 27 H 1.09000 * 109.58398 * 113.80178 * 10 9 7 28 28 H 1.08992 * 109.70373 * 353.43958 * 10 9 7 29 29 H 1.08993 * 109.49871 * 185.41441 * 11 10 9 30 30 H 1.09000 * 109.49993 * 65.31478 * 11 10 9 31 31 H 1.08999 * 109.46179 * 301.35632 * 12 11 10 32 32 H 0.96993 * 119.99684 * 334.99580 * 13 12 11 33 33 H 1.08000 * 120.46672 * 359.70644 * 15 14 13 34 34 H 1.07993 * 119.57973 * 179.97438 * 16 15 14 35 35 H 1.07997 * 120.47083 * 180.02562 * 23 18 17 36 36 H 1.09005 * 109.49696 * 58.59278 * 24 12 11 37 37 H 1.09002 * 109.49585 * 178.68044 * 24 12 11 38 38 H 1.09002 * 109.58653 * 246.19562 * 25 9 7 39 39 H 1.08996 * 109.58761 * 6.62870 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5478 1.4402 0.7000 7 6 2.0102 -1.2021 -0.0005 8 1 3.0533 -1.2235 0.2786 9 7 1.3724 -2.3608 -0.3550 10 6 1.8193 -3.6548 0.1786 11 6 2.0743 -4.6094 -0.9921 12 6 0.8186 -4.6886 -1.8633 13 7 1.0475 -5.6262 -2.9655 14 6 -0.0304 -6.2661 -3.5701 15 6 -1.3362 -6.0284 -3.1408 16 6 -2.3769 -6.6782 -3.7698 17 7 -2.1495 -7.5146 -4.7655 18 6 -0.9290 -7.7659 -5.2006 19 6 -0.7297 -8.7308 -6.3410 20 9 -1.9754 -9.1324 -6.8350 21 9 -0.0036 -8.1048 -7.3599 22 9 -0.0251 -9.8506 -5.8865 23 6 0.1663 -7.1567 -4.6250 24 6 0.5006 -3.3031 -2.4302 25 6 0.2278 -2.3337 -1.2758 26 1 -0.4851 0.8401 0.0004 27 1 1.0469 -4.0692 0.8264 28 1 2.7394 -3.5198 0.7470 29 1 2.3135 -5.6008 -0.6077 30 1 2.9080 -4.2390 -1.5887 31 1 -0.0206 -5.0352 -1.2602 32 1 1.9504 -5.8009 -3.2739 33 1 -1.5293 -5.3454 -2.3268 34 1 -3.3910 -6.5007 -3.4439 35 1 1.1623 -7.3664 -4.9861 36 1 1.3492 -2.9450 -3.0132 37 1 -0.3802 -3.3649 -3.0694 38 1 -0.6744 -2.6405 -0.7466 39 1 0.0985 -1.3252 -1.6685 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000394219782.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:56:03 Heat of formation + Delta-G solvation = -108.560740 kcal Electronic energy + Delta-G solvation = -26069.286391 eV Core-core repulsion = 21789.573518 eV Total energy + Delta-G solvation = -4279.712872 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.125 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -51.18400 -48.71373 -48.64689 -41.45420 -39.57932 -37.02987 -34.49331 -33.12603 -32.40907 -31.64078 -30.20897 -27.73718 -26.64581 -24.66427 -23.98081 -23.74783 -22.52065 -20.99102 -19.68361 -19.56998 -19.47716 -18.79980 -17.69898 -17.42845 -16.81186 -16.65623 -15.95118 -15.71960 -15.55721 -15.37477 -15.33964 -15.17136 -15.10440 -15.01057 -14.80821 -14.79389 -14.75551 -14.49525 -14.11674 -13.66864 -13.17451 -13.04307 -12.91210 -12.66989 -12.58830 -12.30950 -12.04018 -11.92681 -11.79270 -11.32834 -11.24201 -10.70977 -10.55053 -10.43259 -8.90243 -8.70195 -7.88779 -5.33098 -0.21756 0.37680 1.44297 1.46686 1.48842 1.56525 2.17735 2.50696 2.52919 2.55616 3.00905 3.27496 3.37888 3.66832 3.68127 3.82633 3.90020 4.01448 4.03973 4.12871 4.32805 4.47185 4.53259 4.64332 4.66546 4.81382 4.91462 4.95656 5.01171 5.08365 5.15211 5.33117 5.42757 5.49423 5.64451 5.73611 6.06872 6.38649 6.63357 6.78969 7.14641 7.85838 8.35384 9.17446 Molecular weight = 315.13amu Principal moments of inertia in cm(-1) A = 0.029681 B = 0.002656 C = 0.002618 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 943.124300 B =10540.185196 C =10690.634296 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.049 4.049 3 Si 0.962 3.038 4 H -0.287 1.287 5 H -0.297 1.297 6 H -0.268 1.268 7 C -0.262 4.262 8 H 0.068 0.932 9 N -0.611 5.611 10 C 0.143 3.857 11 C -0.125 4.125 12 C 0.165 3.835 13 N -0.711 5.711 14 C 0.258 3.742 15 C -0.228 4.228 16 C 0.142 3.858 17 N -0.518 5.518 18 C 0.062 3.938 19 C 0.525 3.475 20 F -0.171 7.171 21 F -0.172 7.172 22 F -0.172 7.172 23 C -0.202 4.202 24 C -0.137 4.137 25 C 0.179 3.821 26 H 0.250 0.750 27 H 0.020 0.980 28 H 0.059 0.941 29 H 0.089 0.911 30 H 0.065 0.935 31 H 0.080 0.920 32 H 0.412 0.588 33 H 0.148 0.852 34 H 0.190 0.810 35 H 0.159 0.841 36 H 0.050 0.950 37 H 0.062 0.938 38 H 0.004 0.996 39 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.206 -16.732 -9.201 19.096 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.244 4.244 3 Si 0.791 3.209 4 H -0.214 1.214 5 H -0.224 1.224 6 H -0.193 1.193 7 C -0.392 4.392 8 H 0.085 0.915 9 N -0.335 5.335 10 C 0.017 3.983 11 C -0.164 4.164 12 C 0.060 3.940 13 N -0.338 5.338 14 C 0.142 3.858 15 C -0.253 4.253 16 C -0.013 4.013 17 N -0.231 5.231 18 C -0.077 4.077 19 C 0.470 3.530 20 F -0.152 7.152 21 F -0.154 7.154 22 F -0.154 7.154 23 C -0.228 4.228 24 C -0.177 4.177 25 C 0.053 3.947 26 H 0.059 0.941 27 H 0.038 0.962 28 H 0.078 0.922 29 H 0.107 0.893 30 H 0.083 0.917 31 H 0.098 0.902 32 H 0.249 0.751 33 H 0.166 0.834 34 H 0.207 0.793 35 H 0.176 0.824 36 H 0.069 0.931 37 H 0.080 0.920 38 H 0.022 0.978 39 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -0.598 -16.908 -9.431 19.370 hybrid contribution 1.196 1.477 0.217 1.912 sum 0.597 -15.432 -9.214 17.983 Atomic orbital electron populations 1.70161 1.06529 1.25807 1.55350 1.25732 0.96002 1.01342 1.01371 0.85343 0.78223 0.79910 0.77437 1.21442 1.22353 1.19318 1.19505 0.93028 0.86112 1.40578 0.91477 1.44355 1.35904 1.02305 1.50906 1.21010 0.97901 0.85512 0.93906 1.22129 0.96589 1.00309 0.97416 1.20842 0.99018 0.87432 0.86711 1.44890 1.06841 1.45328 1.36707 1.18017 0.89101 0.88960 0.89709 1.22082 0.91768 1.06168 1.05257 1.22868 1.00702 0.88976 0.88770 1.67249 1.21807 1.18648 1.15388 1.20589 0.91523 0.98518 0.97037 1.17904 0.74012 0.79431 0.81642 1.93201 1.42103 1.91238 1.88667 1.93224 1.78078 1.82316 1.61760 1.93221 1.79129 1.54062 1.88942 1.21236 1.00512 1.01608 0.99452 1.22438 1.00834 0.95862 0.98586 1.20546 0.87980 0.97548 0.88658 0.94138 0.96157 0.92217 0.89254 0.91658 0.90197 0.75098 0.83389 0.79299 0.82373 0.93100 0.91964 0.97842 0.92959 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -53.11 11.19 21.65 0.24 -52.87 16 2 C -0.05 -2.62 4.91 84.86 0.42 -2.21 16 3 Si 0.96 43.41 29.59 68.60 2.03 45.44 16 4 H -0.29 -12.86 7.11 99.48 0.71 -12.16 16 5 H -0.30 -13.58 7.11 99.48 0.71 -12.87 16 6 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 7 C -0.26 -13.64 9.59 84.03 0.81 -12.84 16 8 H 0.07 3.41 7.89 -2.91 -0.02 3.39 16 9 N -0.61 -28.16 2.99 -699.12 -2.09 -30.26 16 10 C 0.14 5.12 6.51 86.36 0.56 5.68 16 11 C -0.12 -3.29 5.55 30.67 0.17 -3.12 16 12 C 0.16 4.24 2.13 45.02 0.10 4.34 16 13 N -0.71 -14.55 5.24 -318.29 -1.67 -16.22 16 14 C 0.26 5.53 6.68 38.57 0.26 5.78 16 15 C -0.23 -4.90 8.95 22.49 0.20 -4.70 16 16 C 0.14 2.99 11.17 84.58 0.94 3.93 16 17 N -0.52 -12.87 9.74 -184.20 -1.79 -14.66 16 18 C 0.06 1.44 6.26 42.46 0.27 1.71 16 19 C 0.53 11.77 3.31 71.24 0.24 12.00 16 20 F -0.17 -4.20 16.85 44.97 0.76 -3.45 16 21 F -0.17 -3.74 17.16 44.97 0.77 -2.96 16 22 F -0.17 -3.69 17.28 44.97 0.78 -2.91 16 23 C -0.20 -4.14 9.49 22.49 0.21 -3.93 16 24 C -0.14 -4.49 5.64 30.67 0.17 -4.31 16 25 C 0.18 7.89 5.31 86.36 0.46 8.35 16 26 H 0.25 13.86 8.31 -92.70 -0.77 13.09 16 27 H 0.02 0.74 8.14 -2.39 -0.02 0.72 16 28 H 0.06 2.12 7.94 -2.39 -0.02 2.10 16 29 H 0.09 1.86 8.14 -2.39 -0.02 1.84 16 30 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 31 H 0.08 2.08 6.54 -2.39 -0.02 2.07 16 32 H 0.41 6.88 8.63 -92.71 -0.80 6.08 16 33 H 0.15 3.12 6.38 -2.91 -0.02 3.10 16 34 H 0.19 2.83 8.06 -2.91 -0.02 2.80 16 35 H 0.16 2.52 8.06 -2.91 -0.02 2.50 16 36 H 0.05 1.76 8.14 -2.38 -0.02 1.74 16 37 H 0.06 1.91 7.84 -2.39 -0.02 1.89 16 38 H 0.00 0.16 8.14 -2.39 -0.02 0.14 16 39 H 0.05 2.71 6.04 -2.39 -0.01 2.69 16 Total: -1.00 -61.28 333.24 4.12 -57.16 By element: Atomic # 1 Polarization: 9.75 SS G_CDS: 0.30 Total: 10.05 kcal Atomic # 6 Polarization: 5.88 SS G_CDS: 4.80 Total: 10.68 kcal Atomic # 7 Polarization: -108.69 SS G_CDS: -5.31 Total: -114.01 kcal Atomic # 9 Polarization: -11.63 SS G_CDS: 2.31 Total: -9.32 kcal Atomic # 14 Polarization: 43.41 SS G_CDS: 2.03 Total: 45.44 kcal Total: -61.28 4.12 -57.16 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000394219782.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.404 kcal (2) G-P(sol) polarization free energy of solvation -61.278 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.682 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.122 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.157 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.561 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds