Wall clock time and date at job start Tue Mar 31 2020 10:37:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86799 * 119.99978 * 2 1 4 4 H 1.48495 * 109.47160 * 270.00079 * 3 2 1 5 5 H 1.48498 * 109.47051 * 29.99976 * 3 2 1 6 6 H 1.48497 * 109.47344 * 149.99828 * 3 2 1 7 7 C 1.37876 * 120.00129 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00434 * 180.02562 * 7 2 1 9 9 C 1.50702 * 119.99948 * 359.97438 * 7 2 1 10 10 C 1.53004 * 109.47026 * 179.97438 * 9 7 2 11 11 C 1.53001 * 109.46613 * 180.02562 * 10 9 7 12 12 H 1.09004 * 109.47205 * 305.00102 * 11 10 9 13 13 N 1.46897 * 109.47502 * 65.00244 * 11 10 9 14 14 C 1.50707 * 109.46696 * 185.00462 * 11 10 9 15 15 O 1.21287 * 119.99655 * 260.00159 * 14 11 10 16 16 N 1.34769 * 120.00044 * 79.99668 * 14 11 10 17 17 C 1.39950 * 119.99946 * 184.61136 * 16 14 11 18 18 C 1.38996 * 119.99516 * 144.89959 * 17 16 14 19 19 C 1.38215 * 120.21885 * 180.02562 * 18 17 16 20 20 C 1.38026 * 120.22235 * 359.97438 * 19 18 17 21 21 C 1.39590 * 119.99023 * 0.02562 * 20 19 18 22 22 C 1.47834 * 120.10549 * 179.72360 * 21 20 19 23 23 C 1.35764 * 126.58731 * 359.97438 * 22 21 20 24 24 N 1.34137 * 107.52007 * 179.97438 * 23 22 21 25 25 C 1.30359 * 108.90148 * 359.97438 * 24 23 22 26 26 O 1.33998 * 109.03569 * 359.77291 * 25 24 23 27 27 C 1.38582 * 119.99847 * 324.92410 * 17 16 14 28 28 H 0.97007 * 120.00147 * 359.97438 * 1 2 3 29 29 H 1.09006 * 109.46688 * 59.99963 * 9 7 2 30 30 H 1.09002 * 109.47251 * 300.00348 * 9 7 2 31 31 H 1.09003 * 109.46553 * 60.00579 * 10 9 7 32 32 H 1.08995 * 109.46879 * 300.00404 * 10 9 7 33 33 H 1.00892 * 110.99974 * 296.04786 * 13 11 10 34 34 H 1.00899 * 110.99727 * 59.99687 * 13 11 10 35 35 H 0.97002 * 120.00413 * 4.62083 * 16 14 11 36 36 H 1.07997 * 119.89424 * 359.97438 * 18 17 16 37 37 H 1.08001 * 119.88763 * 179.97438 * 19 18 17 38 38 H 1.07997 * 120.00409 * 179.97438 * 20 19 18 39 39 H 1.07998 * 126.24018 * 359.96220 * 23 22 21 40 40 H 1.08001 * 125.48182 * 179.97438 * 25 24 23 41 41 H 1.08009 * 120.11258 * 359.97438 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4465 2.6526 0.7000 6 1 3.5466 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 6 2.2453 -3.6621 -0.0018 11 6 1.4803 -4.9871 -0.0025 12 1 0.7884 -5.0076 0.8396 13 7 0.7280 -5.1176 -1.2574 14 6 2.4550 -6.1299 0.1202 15 8 2.7864 -6.7527 -0.8663 16 7 2.9583 -6.4598 1.3261 17 6 3.9355 -7.4565 1.4276 18 6 4.9436 -7.3471 2.3783 19 6 5.9113 -8.3284 2.4822 20 6 5.8827 -9.4239 1.6430 21 6 4.8745 -9.5429 0.6850 22 6 4.8450 -10.7121 -0.2192 23 6 5.7267 -11.7444 -0.2362 24 7 5.3402 -12.5897 -1.2034 25 6 4.2661 -12.1181 -1.7719 26 8 3.9316 -10.9619 -1.1831 27 6 3.8983 -8.5522 0.5799 28 1 -0.4851 0.8401 0.0004 29 1 0.6240 -2.5566 -0.8904 30 1 0.6247 -2.5571 0.8897 31 1 2.8726 -3.6047 0.8878 32 1 2.8713 -3.6038 -0.8922 33 1 0.0233 -4.3996 -1.3329 34 1 1.3475 -5.1013 -2.0537 35 1 2.6433 -6.0065 2.1237 36 1 4.9713 -6.4920 3.0374 37 1 6.6923 -8.2378 3.2226 38 1 6.6409 -10.1885 1.7270 39 1 6.5832 -11.8631 0.4108 40 1 3.7300 -12.5859 -2.5845 41 1 3.1157 -8.6390 -0.1594 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000424062947.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:37:26 Heat of formation + Delta-G solvation = 6.694575 kcal Electronic energy + Delta-G solvation = -24783.277424 eV Core-core repulsion = 21050.419138 eV Total energy + Delta-G solvation = -3732.858286 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.137 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -43.49422 -40.62492 -38.74825 -35.72313 -35.04071 -34.91603 -32.92883 -32.47261 -30.24764 -29.97627 -28.77995 -26.62042 -24.36631 -24.00756 -23.25053 -22.12365 -21.34077 -20.67254 -19.92462 -18.51377 -17.52711 -17.17427 -16.78063 -16.48075 -16.25822 -15.44185 -15.25413 -15.00635 -14.52878 -14.51113 -14.28096 -14.06945 -13.83811 -13.39916 -13.30323 -13.19930 -12.90102 -12.26092 -11.97803 -11.86772 -11.77876 -11.63799 -11.16420 -10.98613 -10.89714 -10.75678 -10.65033 -10.07774 -9.97931 -9.91479 -9.39847 -9.29579 -8.54070 -8.49721 -8.31296 -8.20501 -6.14059 -4.17511 0.39027 1.11881 1.70192 2.44957 2.46299 2.70184 2.96100 3.23573 3.30534 3.33198 3.61424 3.96057 4.33528 4.35085 4.66098 4.74918 4.81780 4.85734 4.94467 5.04795 5.15864 5.22188 5.26866 5.41190 5.43148 5.60420 5.62874 5.74136 6.01391 6.05502 6.12923 6.16865 6.19961 6.30412 6.41321 6.77169 6.77976 7.23338 7.41629 7.42940 7.46574 7.54973 7.78976 7.82733 8.16880 8.24786 8.88290 9.47815 10.96769 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.022746 B = 0.002461 C = 0.002310 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1230.700493 B =11373.770537 C =12116.859804 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.059 3.941 3 Si 0.893 3.107 4 H -0.280 1.280 5 H -0.285 1.285 6 H -0.274 1.274 7 C -0.525 4.525 8 H 0.055 0.945 9 C 0.025 3.975 10 C -0.138 4.138 11 C 0.077 3.923 12 H 0.101 0.899 13 N -0.830 5.830 14 C 0.525 3.475 15 O -0.515 6.515 16 N -0.678 5.678 17 C 0.158 3.842 18 C -0.136 4.136 19 C -0.096 4.096 20 C -0.115 4.115 21 C -0.006 4.006 22 C 0.008 3.992 23 C -0.029 4.029 24 N -0.488 5.488 25 C 0.171 3.829 26 O -0.193 6.193 27 C -0.102 4.102 28 H 0.262 0.738 29 H 0.018 0.982 30 H 0.019 0.981 31 H 0.057 0.943 32 H 0.056 0.944 33 H 0.357 0.643 34 H 0.347 0.653 35 H 0.415 0.585 36 H 0.132 0.868 37 H 0.134 0.866 38 H 0.129 0.871 39 H 0.186 0.814 40 H 0.251 0.749 41 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.791 -20.598 4.589 22.861 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.143 4.143 3 Si 0.721 3.279 4 H -0.206 1.206 5 H -0.211 1.211 6 H -0.199 1.199 7 C -0.563 4.563 8 H 0.073 0.927 9 C -0.012 4.012 10 C -0.178 4.178 11 C -0.038 4.038 12 H 0.118 0.882 13 N -0.363 5.363 14 C 0.313 3.687 15 O -0.388 6.388 16 N -0.324 5.324 17 C 0.063 3.937 18 C -0.156 4.156 19 C -0.115 4.115 20 C -0.134 4.134 21 C -0.007 4.007 22 C -0.045 4.045 23 C -0.168 4.168 24 N -0.216 5.216 25 C -0.054 4.054 26 O -0.078 6.078 27 C -0.122 4.122 28 H 0.072 0.928 29 H 0.037 0.963 30 H 0.038 0.962 31 H 0.076 0.924 32 H 0.075 0.925 33 H 0.173 0.827 34 H 0.160 0.840 35 H 0.251 0.749 36 H 0.150 0.850 37 H 0.152 0.848 38 H 0.147 0.853 39 H 0.203 0.797 40 H 0.267 0.733 41 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 8.813 -22.110 3.908 24.120 hybrid contribution 0.350 2.779 0.291 2.816 sum 9.163 -19.331 4.199 21.801 Atomic orbital electron populations 1.69945 1.06023 1.26865 1.50299 1.25012 0.94882 0.99348 0.95057 0.86573 0.79818 0.83294 0.78219 1.20585 1.21115 1.19880 1.21161 0.93020 0.90844 1.51312 0.92705 1.19106 0.93659 0.91040 0.97436 1.22406 0.99945 0.93733 1.01677 1.21477 0.94480 0.91797 0.96047 0.88157 1.58747 1.18445 1.56056 1.03049 1.21207 0.81025 0.84470 0.81963 1.90652 1.58752 1.52447 1.36979 1.43655 1.40099 1.37848 1.10756 1.17661 0.90339 0.88630 0.97071 1.21140 0.93747 1.00364 1.00355 1.20811 0.98400 0.93268 0.99013 1.20959 0.97917 0.99181 0.95352 1.17461 0.97252 0.91167 0.94869 1.21473 0.91510 0.98352 0.93164 1.23271 1.02122 0.91459 0.99963 1.70346 1.12103 1.30142 1.09056 1.28154 0.94588 0.82993 0.99655 1.84550 1.46054 1.37860 1.39369 1.21441 0.99591 0.91112 1.00067 0.92822 0.96344 0.96244 0.92410 0.92537 0.82721 0.84016 0.74882 0.84977 0.84805 0.85332 0.79693 0.73322 0.83473 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.54 13.29 55.43 0.74 -24.81 16 2 C 0.06 1.61 5.46 -17.82 -0.10 1.52 16 3 Si 0.89 20.94 29.54 -169.99 -5.02 15.92 16 4 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 5 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 6 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 7 C -0.53 -14.07 9.11 -34.44 -0.31 -14.38 16 8 H 0.05 1.45 7.74 -52.49 -0.41 1.04 16 9 C 0.02 0.58 4.74 -27.88 -0.13 0.44 16 10 C -0.14 -2.57 4.78 -26.73 -0.13 -2.70 16 11 C 0.08 1.23 3.21 -68.86 -0.22 1.01 16 12 H 0.10 1.46 8.14 -51.93 -0.42 1.04 16 13 N -0.83 -13.56 8.94 -5.65 -0.05 -13.61 16 14 C 0.52 8.21 6.92 -10.99 -0.08 8.14 16 15 O -0.51 -9.50 13.68 5.55 0.08 -9.43 16 16 N -0.68 -8.45 5.34 -9.90 -0.05 -8.50 16 17 C 0.16 1.97 6.29 -83.74 -0.53 1.44 16 18 C -0.14 -1.33 9.96 -39.31 -0.39 -1.72 16 19 C -0.10 -0.81 10.02 -39.67 -0.40 -1.21 16 20 C -0.12 -1.05 9.57 -39.15 -0.37 -1.43 16 21 C -0.01 -0.07 5.87 -105.00 -0.62 -0.69 16 22 C 0.01 0.10 7.07 -36.54 -0.26 -0.16 16 23 C -0.03 -0.30 11.29 -17.43 -0.20 -0.50 16 24 N -0.49 -5.50 11.27 -14.68 -0.17 -5.66 16 25 C 0.17 1.63 13.22 52.14 0.69 2.32 16 26 O -0.19 -2.37 10.59 4.21 0.04 -2.33 16 27 C -0.10 -1.40 8.37 -38.99 -0.33 -1.73 16 28 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 29 H 0.02 0.45 6.87 -51.93 -0.36 0.09 16 30 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 32 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 33 H 0.36 5.85 7.55 -39.30 -0.30 5.55 16 34 H 0.35 5.77 8.58 -39.29 -0.34 5.43 16 35 H 0.41 3.99 8.82 -40.82 -0.36 3.63 16 36 H 0.13 1.03 8.06 -52.49 -0.42 0.61 16 37 H 0.13 0.74 8.06 -52.49 -0.42 0.32 16 38 H 0.13 0.82 7.03 -52.49 -0.37 0.45 16 39 H 0.19 1.38 7.30 -52.49 -0.38 1.00 16 40 H 0.25 1.09 8.06 -52.49 -0.42 0.67 16 41 H 0.15 2.36 6.11 -52.48 -0.32 2.04 16 LS Contribution 354.89 15.07 5.35 5.35 Total: -1.00 -33.59 354.89 -7.38 -40.97 By element: Atomic # 1 Polarization: 16.68 SS G_CDS: -4.92 Total: 11.75 kcal Atomic # 6 Polarization: -6.28 SS G_CDS: -3.37 Total: -9.65 kcal Atomic # 7 Polarization: -53.05 SS G_CDS: 0.47 Total: -52.58 kcal Atomic # 8 Polarization: -11.87 SS G_CDS: 0.12 Total: -11.75 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.02 Total: 15.92 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -33.59 -7.38 -40.97 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424062947.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.663 kcal (2) G-P(sol) polarization free energy of solvation -33.592 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.071 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.376 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.968 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.695 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds