Wall clock time and date at job start Tue Mar 31 2020 10:37:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86799 * 119.99978 * 2 1 4 4 H 1.48495 * 109.47160 * 270.00079 * 3 2 1 5 5 H 1.48498 * 109.47051 * 29.99976 * 3 2 1 6 6 H 1.48497 * 109.47344 * 149.99828 * 3 2 1 7 7 C 1.37876 * 120.00129 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00434 * 180.02562 * 7 2 1 9 9 C 1.50702 * 119.99948 * 359.97438 * 7 2 1 10 10 C 1.53004 * 109.47026 * 179.97438 * 9 7 2 11 11 C 1.53001 * 109.46613 * 180.02562 * 10 9 7 12 12 H 1.09004 * 109.47205 * 305.00102 * 11 10 9 13 13 N 1.46897 * 109.47502 * 65.00244 * 11 10 9 14 14 C 1.50707 * 109.46696 * 185.00462 * 11 10 9 15 15 O 1.21287 * 119.99655 * 260.00159 * 14 11 10 16 16 N 1.34769 * 120.00044 * 79.99668 * 14 11 10 17 17 C 1.39950 * 119.99946 * 184.61136 * 16 14 11 18 18 C 1.38996 * 119.99516 * 144.89959 * 17 16 14 19 19 C 1.38215 * 120.21885 * 180.02562 * 18 17 16 20 20 C 1.38026 * 120.22235 * 359.97438 * 19 18 17 21 21 C 1.39590 * 119.99023 * 0.02562 * 20 19 18 22 22 C 1.47834 * 120.10549 * 179.72360 * 21 20 19 23 23 C 1.35764 * 126.58731 * 359.97438 * 22 21 20 24 24 N 1.34137 * 107.52007 * 179.97438 * 23 22 21 25 25 C 1.30359 * 108.90148 * 359.97438 * 24 23 22 26 26 O 1.33998 * 109.03569 * 359.77291 * 25 24 23 27 27 C 1.38582 * 119.99847 * 324.92410 * 17 16 14 28 28 H 0.97007 * 120.00147 * 359.97438 * 1 2 3 29 29 H 1.09006 * 109.46688 * 59.99963 * 9 7 2 30 30 H 1.09002 * 109.47251 * 300.00348 * 9 7 2 31 31 H 1.09003 * 109.46553 * 60.00579 * 10 9 7 32 32 H 1.08995 * 109.46879 * 300.00404 * 10 9 7 33 33 H 1.00892 * 110.99974 * 296.04786 * 13 11 10 34 34 H 1.00899 * 110.99727 * 59.99687 * 13 11 10 35 35 H 0.97002 * 120.00413 * 4.62083 * 16 14 11 36 36 H 1.07997 * 119.89424 * 359.97438 * 18 17 16 37 37 H 1.08001 * 119.88763 * 179.97438 * 19 18 17 38 38 H 1.07997 * 120.00409 * 179.97438 * 20 19 18 39 39 H 1.07998 * 126.24018 * 359.96220 * 23 22 21 40 40 H 1.08001 * 125.48182 * 179.97438 * 25 24 23 41 41 H 1.08009 * 120.11258 * 359.97438 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4465 2.6526 0.7000 6 1 3.5466 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 6 2.2453 -3.6621 -0.0018 11 6 1.4803 -4.9871 -0.0025 12 1 0.7884 -5.0076 0.8396 13 7 0.7280 -5.1176 -1.2574 14 6 2.4550 -6.1299 0.1202 15 8 2.7864 -6.7527 -0.8663 16 7 2.9583 -6.4598 1.3261 17 6 3.9355 -7.4565 1.4276 18 6 4.9436 -7.3471 2.3783 19 6 5.9113 -8.3284 2.4822 20 6 5.8827 -9.4239 1.6430 21 6 4.8745 -9.5429 0.6850 22 6 4.8450 -10.7121 -0.2192 23 6 5.7267 -11.7444 -0.2362 24 7 5.3402 -12.5897 -1.2034 25 6 4.2661 -12.1181 -1.7719 26 8 3.9316 -10.9619 -1.1831 27 6 3.8983 -8.5522 0.5799 28 1 -0.4851 0.8401 0.0004 29 1 0.6240 -2.5566 -0.8904 30 1 0.6247 -2.5571 0.8897 31 1 2.8726 -3.6047 0.8878 32 1 2.8713 -3.6038 -0.8922 33 1 0.0233 -4.3996 -1.3329 34 1 1.3475 -5.1013 -2.0537 35 1 2.6433 -6.0065 2.1237 36 1 4.9713 -6.4920 3.0374 37 1 6.6923 -8.2378 3.2226 38 1 6.6409 -10.1885 1.7270 39 1 6.5832 -11.8631 0.4108 40 1 3.7300 -12.5859 -2.5845 41 1 3.1157 -8.6390 -0.1594 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000424062947.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:37:26 Heat of formation + Delta-G solvation = -19.127368 kcal Electronic energy + Delta-G solvation = -24784.397147 eV Core-core repulsion = 21050.419138 eV Total energy + Delta-G solvation = -3733.978010 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.137 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -44.29614 -41.70229 -39.71774 -37.18444 -36.06010 -35.79557 -34.86718 -33.26321 -31.71977 -31.15182 -29.59846 -28.14359 -25.94459 -24.80330 -24.21865 -23.12218 -22.38017 -21.96170 -21.15360 -19.39219 -18.89969 -18.16218 -18.03369 -17.62034 -17.19758 -16.64634 -16.41859 -16.24754 -16.07947 -15.54996 -15.47954 -14.99450 -14.85043 -14.70498 -14.55890 -14.16215 -14.03171 -13.86302 -13.48746 -12.98740 -12.81817 -12.67000 -12.59883 -12.50808 -12.47160 -11.86523 -11.77766 -11.67978 -11.56028 -11.31283 -10.79151 -10.70022 -10.57006 -9.71838 -9.42379 -9.01401 -8.22486 -6.32654 -0.39568 0.27056 0.91255 1.39263 1.39973 1.47684 1.50824 1.72039 1.73440 1.92662 2.39182 2.80422 3.11496 3.32653 3.47695 3.68367 3.73515 3.95520 3.99657 4.06912 4.16643 4.18284 4.22274 4.36229 4.49053 4.62370 4.70825 4.77634 4.81548 4.96422 5.05982 5.27823 5.29325 5.31728 5.42937 5.45576 5.47514 5.63965 5.79524 5.93170 6.01043 6.19878 6.35388 6.42496 6.63449 6.82831 7.04457 7.36579 8.88187 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.022746 B = 0.002461 C = 0.002310 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1230.700493 B =11373.770537 C =12116.859804 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C 0.005 3.995 3 Si 0.958 3.042 4 H -0.277 1.277 5 H -0.281 1.281 6 H -0.265 1.265 7 C -0.544 4.544 8 H 0.055 0.945 9 C 0.030 3.970 10 C -0.120 4.120 11 C 0.085 3.915 12 H 0.117 0.883 13 N -0.831 5.831 14 C 0.526 3.474 15 O -0.548 6.548 16 N -0.663 5.663 17 C 0.133 3.867 18 C -0.132 4.132 19 C -0.087 4.087 20 C -0.107 4.107 21 C -0.020 4.020 22 C -0.022 4.022 23 C -0.021 4.021 24 N -0.515 5.515 25 C 0.180 3.820 26 O -0.218 6.218 27 C -0.130 4.130 28 H 0.264 0.736 29 H 0.002 0.998 30 H 0.005 0.995 31 H 0.070 0.930 32 H 0.043 0.957 33 H 0.355 0.645 34 H 0.344 0.656 35 H 0.428 0.572 36 H 0.156 0.844 37 H 0.174 0.826 38 H 0.161 0.839 39 H 0.215 0.785 40 H 0.291 0.709 41 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.087 -21.131 6.192 24.654 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.193 4.193 3 Si 0.783 3.217 4 H -0.202 1.202 5 H -0.207 1.207 6 H -0.189 1.189 7 C -0.582 4.582 8 H 0.073 0.927 9 C -0.007 4.007 10 C -0.160 4.160 11 C -0.031 4.031 12 H 0.134 0.866 13 N -0.362 5.362 14 C 0.314 3.686 15 O -0.425 6.425 16 N -0.310 5.310 17 C 0.039 3.961 18 C -0.152 4.152 19 C -0.105 4.105 20 C -0.126 4.126 21 C -0.021 4.021 22 C -0.075 4.075 23 C -0.160 4.160 24 N -0.243 5.243 25 C -0.045 4.045 26 O -0.105 6.105 27 C -0.150 4.150 28 H 0.073 0.927 29 H 0.020 0.980 30 H 0.023 0.977 31 H 0.088 0.912 32 H 0.062 0.938 33 H 0.171 0.829 34 H 0.157 0.843 35 H 0.267 0.733 36 H 0.174 0.826 37 H 0.191 0.809 38 H 0.178 0.822 39 H 0.231 0.769 40 H 0.306 0.694 41 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 11.129 -22.657 5.555 25.846 hybrid contribution -0.339 2.828 -0.209 2.856 sum 10.790 -19.829 5.346 23.199 Atomic orbital electron populations 1.70055 1.07462 1.27769 1.51329 1.25855 0.95728 1.02957 0.94786 0.85550 0.78796 0.79035 0.78304 1.20241 1.20688 1.18902 1.21611 0.93353 0.92428 1.50840 0.92698 1.18972 0.93998 0.91875 0.95869 1.22139 0.98821 0.93453 1.01610 1.21401 0.94550 0.90720 0.96384 0.86571 1.58757 1.18412 1.55821 1.03258 1.21024 0.80843 0.84170 0.82561 1.90650 1.59882 1.53563 1.38361 1.43436 1.39754 1.37629 1.10170 1.17865 0.91454 0.88412 0.98354 1.21463 0.92842 1.01475 0.99383 1.21310 0.98369 0.91956 0.98881 1.21389 0.97261 1.00045 0.93868 1.17695 0.97715 0.90852 0.95829 1.21745 0.92379 0.99340 0.94028 1.23730 1.02197 0.90445 0.99622 1.70389 1.13108 1.30834 1.09978 1.29180 0.94039 0.81829 0.99409 1.84553 1.46889 1.39032 1.40040 1.21263 1.00113 0.93039 1.00611 0.92731 0.97954 0.97669 0.91169 0.93807 0.82925 0.84306 0.73300 0.82608 0.80891 0.82156 0.76885 0.69388 0.86959 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -53.55 13.29 21.45 0.28 -53.27 16 2 C 0.01 0.29 5.46 84.65 0.46 0.75 16 3 Si 0.96 42.73 29.54 68.60 2.03 44.76 16 4 H -0.28 -12.13 7.11 99.48 0.71 -11.42 16 5 H -0.28 -12.28 7.11 99.48 0.71 -11.57 16 6 H -0.26 -11.31 7.11 99.48 0.71 -10.61 16 7 C -0.54 -29.26 9.11 25.60 0.23 -29.03 16 8 H 0.05 2.88 7.74 -2.91 -0.02 2.86 16 9 C 0.03 1.43 4.74 29.85 0.14 1.57 16 10 C -0.12 -4.50 4.78 30.60 0.15 -4.35 16 11 C 0.08 2.72 3.21 44.17 0.14 2.86 16 12 H 0.12 3.34 8.14 -2.39 -0.02 3.33 16 13 N -0.83 -27.91 8.94 -171.79 -1.54 -29.44 16 14 C 0.53 16.73 6.92 87.66 0.61 17.34 16 15 O -0.55 -21.13 13.68 -3.05 -0.04 -21.18 16 16 N -0.66 -16.33 5.34 -303.61 -1.62 -17.95 16 17 C 0.13 3.26 6.29 38.11 0.24 3.50 16 18 C -0.13 -2.24 9.96 22.45 0.22 -2.02 16 19 C -0.09 -1.14 10.02 22.21 0.22 -0.92 16 20 C -0.11 -1.67 9.57 22.55 0.22 -1.45 16 21 C -0.02 -0.46 5.87 -20.11 -0.12 -0.58 16 22 C -0.02 -0.53 7.07 24.24 0.17 -0.36 16 23 C -0.02 -0.42 11.29 83.77 0.95 0.53 16 24 N -0.51 -11.07 11.27 -315.09 -3.55 -14.62 16 25 C 0.18 3.31 13.22 130.46 1.72 5.04 16 26 O -0.22 -5.55 10.59 -7.84 -0.08 -5.63 16 27 C -0.13 -3.69 8.37 22.65 0.19 -3.50 16 28 H 0.26 14.43 8.31 -92.70 -0.77 13.66 16 29 H 0.00 0.11 6.87 -2.38 -0.02 0.09 16 30 H 0.00 0.25 8.14 -2.39 -0.02 0.23 16 31 H 0.07 2.43 8.14 -2.39 -0.02 2.41 16 32 H 0.04 1.74 8.14 -2.39 -0.02 1.72 16 33 H 0.36 12.04 7.55 -89.70 -0.68 11.36 16 34 H 0.34 11.90 8.58 -89.69 -0.77 11.13 16 35 H 0.43 7.76 8.82 -92.71 -0.82 6.94 16 36 H 0.16 1.86 8.06 -2.91 -0.02 1.84 16 37 H 0.17 0.95 8.06 -2.91 -0.02 0.92 16 38 H 0.16 1.39 7.03 -2.91 -0.02 1.37 16 39 H 0.21 2.61 7.30 -2.91 -0.02 2.59 16 40 H 0.29 2.11 8.06 -2.91 -0.02 2.09 16 41 H 0.11 3.94 6.11 -2.91 -0.02 3.92 16 Total: -1.00 -74.97 354.89 -0.13 -75.10 By element: Atomic # 1 Polarization: 34.02 SS G_CDS: -1.16 Total: 32.86 kcal Atomic # 6 Polarization: -16.19 SS G_CDS: 5.55 Total: -10.64 kcal Atomic # 7 Polarization: -108.85 SS G_CDS: -6.42 Total: -115.27 kcal Atomic # 8 Polarization: -26.68 SS G_CDS: -0.12 Total: -26.81 kcal Atomic # 14 Polarization: 42.73 SS G_CDS: 2.03 Total: 44.76 kcal Total: -74.97 -0.13 -75.10 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424062947.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.975 kcal (2) G-P(sol) polarization free energy of solvation -74.968 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.993 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.134 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.103 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.127 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds