Wall clock time and date at job start Tue Mar 31 2020 10:37:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86797 * 119.99878 * 2 1 4 4 H 1.48502 * 109.46890 * 269.99838 * 3 2 1 5 5 H 1.48498 * 109.47161 * 29.99617 * 3 2 1 6 6 H 1.48500 * 109.47013 * 149.99677 * 3 2 1 7 7 C 1.37875 * 119.99956 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00002 * 0.02562 * 7 2 1 9 9 C 1.50695 * 119.99962 * 180.02562 * 7 2 1 10 10 C 1.53000 * 109.47190 * 180.02562 * 9 7 2 11 11 C 1.53004 * 109.47085 * 179.97438 * 10 9 7 12 12 H 1.09001 * 109.47331 * 54.99488 * 11 10 9 13 13 N 1.46904 * 109.46964 * 294.99839 * 11 10 9 14 14 C 1.50703 * 109.47200 * 175.00124 * 11 10 9 15 15 O 1.21280 * 120.00053 * 99.99480 * 14 11 10 16 16 N 1.34778 * 119.99771 * 280.00114 * 14 11 10 17 17 C 1.39943 * 120.00041 * 184.61992 * 16 14 11 18 18 C 1.39000 * 119.99622 * 324.63109 * 17 16 14 19 19 C 1.38210 * 120.21891 * 180.27785 * 18 17 16 20 20 C 1.38026 * 120.22169 * 359.97438 * 19 18 17 21 21 C 1.39591 * 119.99293 * 0.02562 * 20 19 18 22 22 C 1.47831 * 120.10925 * 180.02562 * 21 20 19 23 23 C 1.35771 * 126.58275 * 359.97438 * 22 21 20 24 24 N 1.34139 * 107.51565 * 180.02562 * 23 22 21 25 25 C 1.30355 * 108.90442 * 359.97438 * 24 23 22 26 26 O 1.33998 * 109.03658 * 359.74200 * 25 24 23 27 27 C 1.38588 * 119.99827 * 144.90337 * 17 16 14 28 28 H 0.96997 * 120.00212 * 0.02562 * 1 2 3 29 29 H 1.08998 * 109.47310 * 59.99440 * 9 7 2 30 30 H 1.09006 * 109.46803 * 299.99956 * 9 7 2 31 31 H 1.08998 * 109.47461 * 59.99520 * 10 9 7 32 32 H 1.08993 * 109.47170 * 299.99427 * 10 9 7 33 33 H 1.00896 * 111.00267 * 176.05046 * 13 11 10 34 34 H 1.00903 * 110.99905 * 300.00213 * 13 11 10 35 35 H 0.97002 * 119.99592 * 4.61583 * 16 14 11 36 36 H 1.07993 * 119.89177 * 0.27932 * 18 17 16 37 37 H 1.08000 * 119.88466 * 179.97438 * 19 18 17 38 38 H 1.07997 * 120.00046 * 179.97438 * 20 19 18 39 39 H 1.07995 * 126.24331 * 359.97214 * 23 22 21 40 40 H 1.08004 * 125.48210 * 179.97438 * 25 24 23 41 41 H 1.08002 * 120.11028 * 359.75128 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6527 0.6999 6 1 3.5466 1.4402 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5115 -1.1940 0.0011 10 6 4.0215 -2.6365 0.0010 11 6 5.5515 -2.6365 0.0009 12 1 5.9149 -2.0470 0.8427 13 7 6.0411 -2.0511 -1.2543 14 6 6.0539 -4.0519 0.1246 15 8 6.4279 -4.6510 -0.8614 16 7 6.0875 -4.6521 1.3309 17 6 6.6432 -5.9298 1.4616 18 6 6.4918 -6.8611 0.4409 19 6 7.0338 -8.1262 0.5676 20 6 7.7294 -8.4730 1.7082 21 6 7.8868 -7.5448 2.7388 22 6 8.6318 -7.9134 3.9614 23 6 9.2156 -9.1109 4.2231 24 7 9.7832 -9.0269 5.4355 25 6 9.5710 -7.8353 5.9196 26 8 8.8675 -7.1212 5.0304 27 6 7.3394 -6.2683 2.6111 28 1 -0.4850 0.8400 -0.0004 29 1 3.8745 -0.6799 0.8911 30 1 3.8751 -0.6804 -0.8889 31 1 3.6585 -3.1502 -0.8892 32 1 3.6579 -3.1505 0.8907 33 1 7.0476 -1.9806 -1.2521 34 1 5.7175 -2.5800 -2.0504 35 1 5.7265 -4.1983 2.1086 36 1 5.9490 -6.5953 -0.4540 37 1 6.9127 -8.8457 -0.2287 38 1 8.1511 -9.4627 1.8035 39 1 9.2212 -9.9739 3.5739 40 1 9.9111 -7.4795 6.8810 41 1 7.4577 -5.5461 3.4054 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000424062956.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:37:29 Heat of formation + Delta-G solvation = 10.595550 kcal Electronic energy + Delta-G solvation = -24575.959736 eV Core-core repulsion = 20843.270609 eV Total energy + Delta-G solvation = -3732.689127 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.137 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -43.66145 -40.80421 -38.92558 -35.64497 -35.21137 -35.04754 -32.85723 -32.57235 -30.62268 -30.38997 -28.82911 -26.86703 -24.41339 -24.02124 -23.26214 -22.05109 -21.61878 -20.49411 -19.94839 -18.59386 -17.69219 -17.18778 -16.96035 -16.72874 -16.52886 -15.91614 -15.38998 -15.24850 -14.66563 -14.50050 -14.35669 -14.14966 -14.05347 -13.63605 -13.42142 -13.21153 -12.67104 -12.46824 -12.19931 -11.83819 -11.80028 -11.75636 -11.10122 -11.04339 -10.94216 -10.78908 -10.47699 -10.08264 -10.00242 -9.77415 -9.67465 -9.17429 -8.76508 -8.60427 -8.49089 -8.27633 -6.03620 -4.01803 0.28594 0.95031 1.59589 2.26081 2.32128 2.48959 2.86795 3.34126 3.40934 3.45408 3.51014 3.81368 4.25646 4.47061 4.48226 4.57535 4.61803 4.71971 4.79473 4.93588 5.05398 5.18069 5.24153 5.26910 5.32078 5.45892 5.52573 5.60592 5.86382 5.95023 6.01423 6.12209 6.16645 6.22073 6.36391 6.67061 6.77718 7.06065 7.25116 7.26166 7.31538 7.48833 7.53930 7.80823 7.94277 8.52796 9.00625 9.58989 11.09756 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.020476 B = 0.002383 C = 0.002271 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1367.096232 B =11749.023292 C =12328.719129 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.066 3.934 3 Si 0.883 3.117 4 H -0.277 1.277 5 H -0.291 1.291 6 H -0.265 1.265 7 C -0.523 4.523 8 H 0.069 0.931 9 C -0.004 4.004 10 C -0.089 4.089 11 C 0.077 3.923 12 H 0.102 0.898 13 N -0.809 5.809 14 C 0.486 3.514 15 O -0.531 6.531 16 N -0.674 5.674 17 C 0.154 3.846 18 C -0.109 4.109 19 C -0.097 4.097 20 C -0.112 4.112 21 C -0.004 4.004 22 C 0.006 3.994 23 C -0.026 4.026 24 N -0.487 5.487 25 C 0.171 3.829 26 O -0.198 6.198 27 C -0.127 4.127 28 H 0.262 0.738 29 H 0.013 0.987 30 H 0.030 0.970 31 H 0.061 0.939 32 H 0.061 0.939 33 H 0.337 0.663 34 H 0.351 0.649 35 H 0.416 0.584 36 H 0.145 0.855 37 H 0.134 0.866 38 H 0.130 0.870 39 H 0.187 0.813 40 H 0.252 0.748 41 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.776 -16.316 8.198 26.917 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.135 4.135 3 Si 0.711 3.289 4 H -0.203 1.203 5 H -0.217 1.217 6 H -0.189 1.189 7 C -0.561 4.561 8 H 0.087 0.913 9 C -0.041 4.041 10 C -0.127 4.127 11 C -0.039 4.039 12 H 0.120 0.880 13 N -0.337 5.337 14 C 0.273 3.727 15 O -0.406 6.406 16 N -0.320 5.320 17 C 0.060 3.940 18 C -0.129 4.129 19 C -0.115 4.115 20 C -0.131 4.131 21 C -0.006 4.006 22 C -0.047 4.047 23 C -0.165 4.165 24 N -0.214 5.214 25 C -0.054 4.054 26 O -0.085 6.085 27 C -0.148 4.148 28 H 0.072 0.928 29 H 0.032 0.968 30 H 0.048 0.952 31 H 0.080 0.920 32 H 0.079 0.921 33 H 0.149 0.851 34 H 0.166 0.834 35 H 0.253 0.747 36 H 0.163 0.837 37 H 0.152 0.848 38 H 0.148 0.852 39 H 0.204 0.796 40 H 0.267 0.733 41 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 19.772 -16.284 7.983 26.830 hybrid contribution 0.378 0.673 0.147 0.786 sum 20.150 -15.611 8.129 26.755 Atomic orbital electron populations 1.69920 1.06361 1.26885 1.51255 1.25022 0.94714 0.99257 0.94541 0.86727 0.80218 0.83399 0.78596 1.20268 1.21689 1.18910 1.21156 0.89663 0.94364 1.50910 0.91286 1.19483 0.96443 0.90956 0.97256 1.21513 0.87592 1.01881 1.01729 1.21928 0.99594 0.86884 0.95476 0.87966 1.59022 1.15552 1.55850 1.03265 1.23002 0.76420 0.91185 0.82090 1.90653 1.47085 1.66155 1.36714 1.43832 1.59961 1.15748 1.12445 1.17704 0.95747 0.85431 0.95157 1.21538 0.99758 0.91864 0.99703 1.20980 0.97048 0.96196 0.97284 1.20986 1.00422 0.98919 0.92774 1.17277 0.98884 0.94409 0.90009 1.21466 1.03745 0.90588 0.88896 1.23309 1.00253 0.98321 0.94648 1.70357 1.21624 1.19744 1.09708 1.28162 0.94521 0.86199 0.96492 1.84494 1.57209 1.42083 1.24678 1.20968 0.98747 0.96531 0.98533 0.92786 0.96840 0.95167 0.92005 0.92060 0.85110 0.83427 0.74739 0.83730 0.84770 0.85247 0.79623 0.73258 0.85050 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -27.74 13.96 55.43 0.77 -26.96 16 2 C 0.07 1.89 5.47 -17.82 -0.10 1.79 16 3 Si 0.88 21.61 27.47 -169.99 -4.67 16.95 16 4 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 5 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 6 H -0.26 -6.17 6.54 56.52 0.37 -5.80 16 7 C -0.52 -14.54 9.66 -34.44 -0.33 -14.88 16 8 H 0.07 2.07 7.99 -52.48 -0.42 1.65 16 9 C 0.00 -0.09 3.93 -27.89 -0.11 -0.20 16 10 C -0.09 -1.60 4.78 -26.73 -0.13 -1.73 16 11 C 0.08 1.11 3.15 -68.86 -0.22 0.89 16 12 H 0.10 1.32 8.14 -51.93 -0.42 0.90 16 13 N -0.81 -11.64 8.44 -5.65 -0.05 -11.69 16 14 C 0.49 6.65 6.91 -10.98 -0.08 6.58 16 15 O -0.53 -8.41 13.69 5.56 0.08 -8.34 16 16 N -0.67 -7.72 5.33 -9.89 -0.05 -7.77 16 17 C 0.15 1.80 6.29 -83.74 -0.53 1.27 16 18 C -0.11 -1.28 8.70 -39.31 -0.34 -1.62 16 19 C -0.10 -0.90 10.02 -39.67 -0.40 -1.30 16 20 C -0.11 -0.96 9.57 -39.15 -0.37 -1.33 16 21 C 0.00 -0.04 5.87 -105.01 -0.62 -0.66 16 22 C 0.01 0.06 7.07 -36.54 -0.26 -0.20 16 23 C -0.03 -0.23 11.29 -17.43 -0.20 -0.43 16 24 N -0.49 -4.68 11.27 -14.68 -0.17 -4.84 16 25 C 0.17 1.25 13.22 52.14 0.69 1.94 16 26 O -0.20 -1.84 10.59 4.21 0.04 -1.80 16 27 C -0.13 -1.32 9.65 -38.99 -0.38 -1.70 16 28 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 29 H 0.01 0.30 7.20 -51.93 -0.37 -0.07 16 30 H 0.03 0.70 7.18 -51.93 -0.37 0.33 16 31 H 0.06 1.18 8.14 -51.93 -0.42 0.75 16 32 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 33 H 0.34 4.15 9.06 -39.29 -0.36 3.79 16 34 H 0.35 5.14 8.58 -39.29 -0.34 4.81 16 35 H 0.42 3.82 8.82 -40.82 -0.36 3.46 16 36 H 0.15 1.93 6.22 -52.49 -0.33 1.61 16 37 H 0.13 0.94 8.06 -52.49 -0.42 0.51 16 38 H 0.13 0.76 7.03 -52.49 -0.37 0.39 16 39 H 0.19 1.18 7.30 -52.49 -0.38 0.79 16 40 H 0.25 0.55 8.06 -52.48 -0.42 0.13 16 41 H 0.13 1.21 7.94 -52.49 -0.42 0.79 16 LS Contribution 353.25 15.07 5.32 5.32 Total: -1.00 -34.78 353.25 -7.07 -41.85 By element: Atomic # 1 Polarization: 13.85 SS G_CDS: -5.00 Total: 8.85 kcal Atomic # 6 Polarization: -8.22 SS G_CDS: -3.36 Total: -11.58 kcal Atomic # 7 Polarization: -51.78 SS G_CDS: 0.51 Total: -51.27 kcal Atomic # 8 Polarization: -10.25 SS G_CDS: 0.12 Total: -10.13 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -4.67 Total: 16.95 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -34.78 -7.07 -41.85 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424062956.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.450 kcal (2) G-P(sol) polarization free energy of solvation -34.782 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.668 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.072 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.854 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.596 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds