Wall clock time and date at job start Tue Mar 31 2020 10:37:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86809 * 120.00151 * 2 1 4 4 H 1.48502 * 109.46934 * 269.99817 * 3 2 1 5 5 H 1.48493 * 109.46842 * 30.00093 * 3 2 1 6 6 H 1.48499 * 109.47077 * 150.00162 * 3 2 1 7 7 C 1.37872 * 120.00090 * 180.02562 * 2 1 3 8 8 H 1.08007 * 120.00354 * 179.97438 * 7 2 1 9 9 C 1.50706 * 120.00150 * 359.97438 * 7 2 1 10 10 C 1.52992 * 109.47548 * 179.97438 * 9 7 2 11 11 C 1.53002 * 109.47354 * 179.97438 * 10 9 7 12 12 H 1.08995 * 109.47267 * 305.00336 * 11 10 9 13 13 N 1.46900 * 109.46915 * 64.99983 * 11 10 9 14 14 C 1.50694 * 109.47370 * 184.99978 * 11 10 9 15 15 O 1.21289 * 120.00065 * 260.00447 * 14 11 10 16 16 N 1.34777 * 119.99936 * 80.00001 * 14 11 10 17 17 C 1.39952 * 119.99820 * 184.62470 * 16 14 11 18 18 C 1.38992 * 120.00015 * 324.63308 * 17 16 14 19 19 C 1.38210 * 120.21902 * 180.27487 * 18 17 16 20 20 C 1.38021 * 120.22300 * 0.02562 * 19 18 17 21 21 C 1.39579 * 119.99711 * 359.97438 * 20 19 18 22 22 C 1.47839 * 120.11265 * 179.97438 * 21 20 19 23 23 N 1.31214 * 125.72420 * 0.02562 * 22 21 20 24 24 C 1.34161 * 108.64513 * 180.02562 * 23 22 21 25 25 C 1.34541 * 107.84012 * 359.97438 * 24 23 22 26 26 O 1.34429 * 125.72456 * 179.71719 * 22 21 20 27 27 C 1.38592 * 119.99589 * 144.91603 * 17 16 14 28 28 H 0.97007 * 119.99630 * 359.97438 * 1 2 3 29 29 H 1.08998 * 109.46618 * 59.99854 * 9 7 2 30 30 H 1.09001 * 109.46804 * 300.00193 * 9 7 2 31 31 H 1.09001 * 109.47171 * 59.99745 * 10 9 7 32 32 H 1.09001 * 109.47246 * 299.99948 * 10 9 7 33 33 H 1.00900 * 111.00243 * 296.05415 * 13 11 10 34 34 H 1.00904 * 110.99722 * 59.99796 * 13 11 10 35 35 H 0.96999 * 120.00387 * 4.62059 * 16 14 11 36 36 H 1.08002 * 119.88827 * 0.25721 * 18 17 16 37 37 H 1.08006 * 119.88285 * 180.02562 * 19 18 17 38 38 H 1.08005 * 120.00076 * 179.97438 * 20 19 18 39 39 H 1.07996 * 126.07771 * 179.97438 * 24 23 22 40 40 H 1.08000 * 126.36742 * 180.02562 * 25 24 23 41 41 H 1.08002 * 120.11297 * 359.73855 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6526 0.7000 6 1 3.5468 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2452 -3.6621 -0.0018 11 6 1.4802 -4.9871 -0.0012 12 1 0.7889 -5.0072 0.8413 13 7 0.7270 -5.1183 -1.2556 14 6 2.4548 -6.1299 0.1214 15 8 2.7856 -6.7532 -0.8651 16 7 2.9591 -6.4591 1.3271 17 6 3.9365 -7.4557 1.4284 18 6 3.8953 -8.5580 0.5828 19 6 4.8550 -9.5475 0.6827 20 6 5.8603 -9.4480 1.6231 21 6 5.9104 -8.3450 2.4770 22 6 6.9857 -8.2361 3.4856 23 7 7.9484 -9.1071 3.6762 24 6 8.7310 -8.6699 4.6744 25 6 8.2321 -7.4972 5.1059 26 8 7.1446 -7.2253 4.3575 27 6 4.9420 -7.3462 2.3759 28 1 -0.4850 0.8401 0.0004 29 1 0.6240 -2.5566 -0.8903 30 1 0.6247 -2.5571 0.8897 31 1 2.8726 -3.6047 0.8877 32 1 2.8711 -3.6040 -0.8923 33 1 0.0223 -4.4002 -1.3311 34 1 1.3461 -5.1024 -2.0523 35 1 2.6446 -6.0054 2.1247 36 1 3.1106 -8.6416 -0.1546 37 1 4.8180 -10.4016 0.0225 38 1 6.6081 -10.2236 1.6983 39 1 9.6058 -9.1702 5.0625 40 1 8.6315 -6.8851 5.9010 41 1 4.9755 -6.4906 3.0341 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000424173726.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:37:30 Heat of formation + Delta-G solvation = -15.671528 kcal Electronic energy + Delta-G solvation = -24638.168553 eV Core-core repulsion = 20904.340400 eV Total energy + Delta-G solvation = -3733.828153 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.137 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -44.27823 -41.70770 -39.75610 -37.16910 -36.10056 -35.68288 -34.85746 -33.17634 -31.69824 -31.17170 -29.87016 -28.13536 -25.93901 -25.04569 -24.03943 -22.92458 -22.75625 -21.90839 -21.09051 -19.27681 -19.00236 -18.20701 -17.80497 -17.64622 -17.23199 -16.63641 -16.49519 -16.19818 -16.03835 -15.70243 -15.45249 -15.02824 -14.79001 -14.66144 -14.52929 -14.10502 -14.09760 -13.90525 -13.47038 -13.05294 -12.94383 -12.68130 -12.56460 -12.51658 -12.44477 -11.83193 -11.72426 -11.66520 -11.53434 -11.30553 -10.82821 -10.60120 -10.56254 -9.67871 -9.52635 -9.11809 -8.22211 -6.32166 -0.41867 0.18368 0.82465 1.39105 1.39787 1.46797 1.50584 1.66060 1.75176 1.91090 2.39286 2.74803 2.97292 3.11824 3.59749 3.72172 3.83756 4.01947 4.03468 4.09428 4.15976 4.20136 4.21644 4.38103 4.42467 4.62354 4.64457 4.81662 4.86379 4.89594 5.07583 5.13724 5.25765 5.27272 5.36447 5.44006 5.46539 5.65489 5.80458 5.86033 6.04003 6.20811 6.35050 6.46556 6.65050 6.83445 7.03931 7.37050 8.88435 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.013213 B = 0.002771 C = 0.002347 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2118.622976 B =10101.095462 C =11929.328765 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C 0.006 3.994 3 Si 0.957 3.043 4 H -0.276 1.276 5 H -0.281 1.281 6 H -0.266 1.266 7 C -0.545 4.545 8 H 0.054 0.946 9 C 0.030 3.970 10 C -0.122 4.122 11 C 0.085 3.915 12 H 0.117 0.883 13 N -0.829 5.829 14 C 0.530 3.470 15 O -0.542 6.542 16 N -0.664 5.664 17 C 0.139 3.861 18 C -0.115 4.115 19 C -0.096 4.096 20 C -0.087 4.087 21 C -0.014 4.014 22 C 0.213 3.787 23 N -0.493 5.493 24 C -0.058 4.058 25 C -0.061 4.061 26 O -0.209 6.209 27 C -0.116 4.116 28 H 0.264 0.736 29 H 0.004 0.996 30 H 0.005 0.995 31 H 0.066 0.934 32 H 0.045 0.955 33 H 0.355 0.645 34 H 0.345 0.655 35 H 0.426 0.574 36 H 0.133 0.867 37 H 0.161 0.839 38 H 0.147 0.853 39 H 0.216 0.784 40 H 0.260 0.740 41 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.309 -18.257 10.254 24.811 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.192 4.192 3 Si 0.782 3.218 4 H -0.202 1.202 5 H -0.207 1.207 6 H -0.190 1.190 7 C -0.583 4.583 8 H 0.072 0.928 9 C -0.007 4.007 10 C -0.162 4.162 11 C -0.031 4.031 12 H 0.134 0.866 13 N -0.360 5.360 14 C 0.318 3.682 15 O -0.418 6.418 16 N -0.310 5.310 17 C 0.045 3.955 18 C -0.135 4.135 19 C -0.114 4.114 20 C -0.107 4.107 21 C -0.016 4.016 22 C 0.010 3.990 23 N -0.223 5.223 24 C -0.198 4.198 25 C -0.131 4.131 26 O -0.095 6.095 27 C -0.138 4.138 28 H 0.073 0.927 29 H 0.022 0.978 30 H 0.023 0.977 31 H 0.085 0.915 32 H 0.064 0.936 33 H 0.170 0.830 34 H 0.158 0.842 35 H 0.265 0.735 36 H 0.151 0.849 37 H 0.178 0.822 38 H 0.165 0.835 39 H 0.233 0.767 40 H 0.276 0.724 41 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 13.158 -19.748 9.473 25.551 hybrid contribution 0.458 2.968 0.566 3.056 sum 13.616 -16.780 10.038 23.827 Atomic orbital electron populations 1.70053 1.07420 1.27751 1.51346 1.25835 0.95716 1.02880 0.94794 0.85573 0.78780 0.79138 0.78328 1.20172 1.20669 1.19034 1.21623 0.93328 0.92523 1.50829 0.92810 1.18969 0.94006 0.91820 0.95925 1.22152 0.98848 0.93657 1.01558 1.21386 0.94560 0.90582 0.96536 0.86561 1.58771 1.18330 1.55754 1.03190 1.20941 0.80753 0.84124 0.82345 1.90630 1.59793 1.53384 1.38024 1.43434 1.39458 1.37747 1.10386 1.17666 0.90568 0.89380 0.97919 1.21600 1.00580 0.92098 0.99245 1.21252 0.93037 0.99173 0.97926 1.21269 0.99002 0.96688 0.93728 1.17118 0.92209 0.97380 0.94898 1.23892 0.97311 0.83973 0.93788 1.70604 1.04799 1.28860 1.18081 1.23976 1.03104 0.96562 0.96116 1.26101 0.87246 1.00402 0.99322 1.84538 1.42156 1.43533 1.39318 1.20981 0.92779 0.99542 1.00519 0.92725 0.97763 0.97710 0.91508 0.93638 0.82965 0.84188 0.73507 0.84885 0.82165 0.83513 0.76733 0.72404 0.83834 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -53.51 13.29 21.44 0.28 -53.22 16 2 C 0.01 0.35 5.46 84.65 0.46 0.81 16 3 Si 0.96 42.89 29.54 68.60 2.03 44.91 16 4 H -0.28 -12.13 7.11 99.48 0.71 -11.43 16 5 H -0.28 -12.33 7.11 99.48 0.71 -11.62 16 6 H -0.27 -11.48 7.11 99.48 0.71 -10.77 16 7 C -0.54 -29.38 9.11 25.60 0.23 -29.15 16 8 H 0.05 2.84 7.74 -2.91 -0.02 2.82 16 9 C 0.03 1.42 4.74 29.85 0.14 1.56 16 10 C -0.12 -4.54 4.78 30.59 0.15 -4.39 16 11 C 0.08 2.63 3.21 44.17 0.14 2.77 16 12 H 0.12 3.25 8.14 -2.39 -0.02 3.23 16 13 N -0.83 -26.60 8.94 -171.81 -1.54 -28.13 16 14 C 0.53 15.98 6.92 87.66 0.61 16.59 16 15 O -0.54 -19.19 13.69 -3.06 -0.04 -19.23 16 16 N -0.66 -16.05 5.33 -303.61 -1.62 -17.67 16 17 C 0.14 3.41 6.29 38.11 0.24 3.65 16 18 C -0.11 -2.82 8.70 22.44 0.20 -2.62 16 19 C -0.10 -1.89 10.02 22.21 0.22 -1.67 16 20 C -0.09 -1.79 9.68 22.54 0.22 -1.57 16 21 C -0.01 -0.32 5.87 -20.11 -0.12 -0.44 16 22 C 0.21 4.95 7.90 87.33 0.69 5.64 16 23 N -0.49 -11.12 10.91 -305.07 -3.33 -14.44 16 24 C -0.06 -0.90 11.87 83.49 0.99 0.09 16 25 C -0.06 -0.81 12.17 66.97 0.82 0.00 16 26 O -0.21 -4.35 10.52 -8.41 -0.09 -4.44 16 27 C -0.12 -2.63 9.63 22.66 0.22 -2.41 16 28 H 0.26 14.43 8.31 -92.70 -0.77 13.66 16 29 H 0.00 0.20 6.87 -2.39 -0.02 0.19 16 30 H 0.00 0.23 8.14 -2.39 -0.02 0.21 16 31 H 0.07 2.34 8.14 -2.39 -0.02 2.32 16 32 H 0.04 1.78 8.14 -2.39 -0.02 1.77 16 33 H 0.35 11.62 7.55 -89.69 -0.68 10.95 16 34 H 0.35 11.33 8.58 -89.69 -0.77 10.56 16 35 H 0.43 7.96 8.82 -92.71 -0.82 7.14 16 36 H 0.13 3.66 6.22 -2.91 -0.02 3.65 16 37 H 0.16 2.25 8.06 -2.91 -0.02 2.23 16 38 H 0.15 2.68 7.83 -2.91 -0.02 2.66 16 39 H 0.22 1.70 8.06 -2.91 -0.02 1.67 16 40 H 0.26 0.78 8.06 -2.91 -0.02 0.75 16 41 H 0.14 2.87 7.90 -2.91 -0.02 2.85 16 Total: -1.00 -70.28 356.45 -0.26 -70.55 By element: Atomic # 1 Polarization: 33.98 SS G_CDS: -1.17 Total: 32.81 kcal Atomic # 6 Polarization: -16.34 SS G_CDS: 5.20 Total: -11.13 kcal Atomic # 7 Polarization: -107.27 SS G_CDS: -6.20 Total: -113.47 kcal Atomic # 8 Polarization: -23.54 SS G_CDS: -0.13 Total: -23.67 kcal Atomic # 14 Polarization: 42.89 SS G_CDS: 2.03 Total: 44.91 kcal Total: -70.28 -0.26 -70.55 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424173726.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.875 kcal (2) G-P(sol) polarization free energy of solvation -70.283 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.408 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.264 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.546 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.672 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds