Wall clock time and date at job start Tue Mar 31 2020 10:37:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86794 * 120.00193 * 2 1 4 4 H 1.48499 * 109.47090 * 270.00474 * 3 2 1 5 5 H 1.48500 * 109.47379 * 30.00315 * 3 2 1 6 6 H 1.48503 * 109.47260 * 150.00300 * 3 2 1 7 7 C 1.37878 * 119.99565 * 180.02562 * 2 1 3 8 8 H 1.08006 * 120.00313 * 359.97438 * 7 2 1 9 9 C 1.50705 * 119.99823 * 179.97438 * 7 2 1 10 10 C 1.52998 * 109.47189 * 179.97438 * 9 7 2 11 11 C 1.53001 * 109.47152 * 179.97438 * 10 9 7 12 12 H 1.08997 * 109.46648 * 55.00868 * 11 10 9 13 13 N 1.46898 * 109.47252 * 295.00461 * 11 10 9 14 14 C 1.50704 * 109.46859 * 175.00102 * 11 10 9 15 15 O 1.21288 * 119.99786 * 100.00509 * 14 11 10 16 16 N 1.34776 * 120.00363 * 279.99982 * 14 11 10 17 17 C 1.39941 * 120.00347 * 185.27880 * 16 14 11 18 18 C 1.38999 * 119.99937 * 213.38359 * 17 16 14 19 19 C 1.38212 * 120.22125 * 179.97438 * 18 17 16 20 20 C 1.38034 * 120.21797 * 359.78695 * 19 18 17 21 21 C 1.39571 * 119.99352 * 0.46494 * 20 19 18 22 22 C 1.47843 * 120.10554 * 179.79105 * 21 20 19 23 23 N 1.31211 * 125.72539 * 359.72139 * 22 21 20 24 24 C 1.34160 * 108.64444 * 180.02562 * 23 22 21 25 25 C 1.34550 * 107.84213 * 359.97438 * 24 23 22 26 26 O 1.34430 * 125.72367 * 179.41601 * 22 21 20 27 27 C 1.38593 * 120.00023 * 33.35443 * 17 16 14 28 28 H 0.97002 * 119.99841 * 359.97438 * 1 2 3 29 29 H 1.08996 * 109.46872 * 60.00174 * 9 7 2 30 30 H 1.08996 * 109.46941 * 300.00222 * 9 7 2 31 31 H 1.09007 * 109.47168 * 60.00154 * 10 9 7 32 32 H 1.09000 * 109.47555 * 300.00610 * 10 9 7 33 33 H 1.00903 * 111.00133 * 299.99724 * 13 11 10 34 34 H 1.00897 * 111.00111 * 63.95197 * 13 11 10 35 35 H 0.97001 * 119.99229 * 5.27714 * 16 14 11 36 36 H 1.07999 * 119.89020 * 359.97438 * 18 17 16 37 37 H 1.07999 * 119.89029 * 180.02562 * 19 18 17 38 38 H 1.08002 * 119.99782 * 180.25328 * 20 19 18 39 39 H 1.08007 * 126.08292 * 179.97438 * 24 23 22 40 40 H 1.07999 * 126.36662 * 180.02562 * 25 24 23 41 41 H 1.08006 * 120.10929 * 0.02562 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4468 2.6526 0.7001 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4644 -2.1295 -0.0005 9 6 3.5115 -1.1942 -0.0011 10 6 4.0215 -2.6367 -0.0010 11 6 5.5515 -2.6367 -0.0022 12 1 5.9154 -2.0471 0.8392 13 7 6.0402 -2.0518 -1.2580 14 6 6.0538 -4.0522 0.1217 15 8 6.4272 -4.6517 -0.8644 16 7 6.0883 -4.6519 1.3282 17 6 6.6564 -5.9238 1.4614 18 6 6.1427 -6.8205 2.3910 19 6 6.6999 -8.0781 2.5261 20 6 7.7674 -8.4535 1.7357 21 6 8.2938 -7.5584 0.8030 22 6 9.4401 -7.9563 -0.0416 23 7 10.0519 -9.1165 -0.0058 24 6 11.0400 -9.1085 -0.9132 25 6 11.0313 -7.9085 -1.5217 26 8 10.0268 -7.1922 -0.9792 27 6 7.7308 -6.2897 0.6661 28 1 -0.4850 0.8401 0.0004 29 1 3.8752 -0.6806 0.8888 30 1 3.8745 -0.6801 -0.8911 31 1 3.6578 -3.1507 -0.8908 32 1 3.6584 -3.1504 0.8892 33 1 5.7160 -2.5810 -2.0536 34 1 5.7707 -1.0825 -1.3344 35 1 5.7193 -4.2017 2.1042 36 1 5.3053 -6.5335 3.0098 37 1 6.2962 -8.7707 3.2498 38 1 8.1974 -9.4386 1.8414 39 1 11.7214 -9.9209 -1.1189 40 1 11.7016 -7.5817 -2.3029 41 1 8.1314 -5.5943 -0.0568 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000424173730.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:37:33 Heat of formation + Delta-G solvation = 12.220022 kcal Electronic energy + Delta-G solvation = -24817.896352 eV Core-core repulsion = 21085.277667 eV Total energy + Delta-G solvation = -3732.618685 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.137 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -43.47864 -40.67001 -38.77999 -35.86054 -35.14135 -34.78951 -32.87449 -32.35486 -30.40767 -30.19373 -29.13055 -26.92618 -24.33987 -24.19766 -23.12068 -22.12805 -21.24515 -20.54989 -19.97580 -18.56644 -17.57130 -17.00613 -16.80391 -16.76079 -16.37703 -15.62722 -15.25273 -15.02232 -14.69435 -14.38209 -14.29252 -14.10222 -13.69725 -13.53069 -13.39992 -13.20003 -12.86503 -12.72080 -12.05165 -12.02307 -11.81834 -11.63482 -11.41813 -11.05216 -10.85733 -10.69550 -10.40549 -10.17867 -9.92765 -9.86470 -9.58004 -9.37347 -8.67027 -8.63570 -8.45018 -8.25017 -6.16229 -4.16325 0.40634 1.10712 1.57913 2.43944 2.45403 2.69307 2.89681 3.21370 3.29907 3.30368 3.61506 3.71438 4.33168 4.56802 4.67832 4.73956 4.78303 4.87434 4.90403 4.99839 5.16308 5.21409 5.22347 5.31706 5.40995 5.46546 5.59081 5.69093 5.89366 6.02302 6.06355 6.12605 6.19656 6.22912 6.26395 6.56403 6.73854 7.00642 7.13340 7.16450 7.37103 7.44150 7.59711 7.67689 8.11399 8.39163 8.87423 9.44621 10.96881 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.024291 B = 0.002526 C = 0.002347 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1152.426343 B =11080.703349 C =11927.165623 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.067 3.933 3 Si 0.881 3.119 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.265 1.265 7 C -0.525 4.525 8 H 0.071 0.929 9 C -0.010 4.010 10 C -0.131 4.131 11 C 0.074 3.926 12 H 0.102 0.898 13 N -0.830 5.830 14 C 0.525 3.475 15 O -0.512 6.512 16 N -0.677 5.677 17 C 0.156 3.844 18 C -0.126 4.126 19 C -0.101 4.101 20 C -0.091 4.091 21 C -0.006 4.006 22 C 0.240 3.760 23 N -0.476 5.476 24 C -0.042 4.042 25 C -0.073 4.073 26 O -0.191 6.191 27 C -0.092 4.092 28 H 0.264 0.736 29 H 0.019 0.981 30 H 0.012 0.988 31 H 0.063 0.937 32 H 0.064 0.936 33 H 0.349 0.651 34 H 0.353 0.647 35 H 0.415 0.585 36 H 0.134 0.866 37 H 0.136 0.864 38 H 0.138 0.862 39 H 0.186 0.814 40 H 0.217 0.783 41 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.140 -15.041 3.786 25.420 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.135 4.135 3 Si 0.708 3.292 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.190 1.190 7 C -0.563 4.563 8 H 0.090 0.910 9 C -0.048 4.048 10 C -0.171 4.171 11 C -0.041 4.041 12 H 0.120 0.880 13 N -0.363 5.363 14 C 0.314 3.686 15 O -0.385 6.385 16 N -0.323 5.323 17 C 0.061 3.939 18 C -0.147 4.147 19 C -0.120 4.120 20 C -0.111 4.111 21 C -0.008 4.008 22 C 0.037 3.963 23 N -0.205 5.205 24 C -0.182 4.182 25 C -0.144 4.144 26 O -0.077 6.077 27 C -0.114 4.114 28 H 0.074 0.926 29 H 0.037 0.963 30 H 0.030 0.970 31 H 0.081 0.919 32 H 0.082 0.918 33 H 0.163 0.837 34 H 0.168 0.832 35 H 0.252 0.748 36 H 0.152 0.848 37 H 0.154 0.846 38 H 0.156 0.844 39 H 0.203 0.797 40 H 0.234 0.766 41 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 20.799 -15.864 3.684 26.416 hybrid contribution -0.594 1.769 -0.488 1.929 sum 20.205 -14.095 3.196 24.842 Atomic orbital electron populations 1.69911 1.06342 1.27068 1.50454 1.25051 0.94773 0.99257 0.94383 0.86764 0.80292 0.83523 0.78591 1.20213 1.21297 1.18970 1.21048 0.89152 0.94558 1.51571 0.91045 1.19572 0.97648 0.91149 0.96386 1.22238 0.90885 1.01391 1.02557 1.21521 0.95918 0.90745 0.95965 0.88022 1.58731 1.66708 1.07618 1.03227 1.21087 0.76575 0.88966 0.82020 1.90681 1.45834 1.65323 1.36705 1.43647 1.60342 1.16398 1.11947 1.17539 0.92873 0.86095 0.97403 1.21180 1.00286 0.93209 1.00049 1.20878 0.95899 0.95812 0.99374 1.21096 0.96261 0.99445 0.94251 1.17072 0.92475 0.94922 0.96353 1.23844 0.96308 0.85253 0.90916 1.70630 1.08247 1.19898 1.21710 1.23376 0.99563 0.98782 0.96505 1.25197 0.93501 0.92858 1.02846 1.84581 1.37754 1.43119 1.42197 1.21220 0.94203 0.95989 0.99991 0.92578 0.96264 0.96992 0.91872 0.91759 0.83709 0.83166 0.74787 0.84789 0.84590 0.84447 0.79653 0.76619 0.83746 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.92 13.96 55.43 0.77 -26.14 16 2 C 0.07 1.88 5.47 -17.82 -0.10 1.78 16 3 Si 0.88 20.63 27.47 -169.99 -4.67 15.96 16 4 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 5 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 6 H -0.27 -5.84 6.54 56.52 0.37 -5.47 16 7 C -0.53 -14.18 9.66 -34.44 -0.33 -14.52 16 8 H 0.07 2.10 7.99 -52.48 -0.42 1.68 16 9 C -0.01 -0.22 3.81 -27.88 -0.11 -0.32 16 10 C -0.13 -2.31 4.78 -26.73 -0.13 -2.44 16 11 C 0.07 1.09 3.21 -68.86 -0.22 0.87 16 12 H 0.10 1.34 8.14 -51.93 -0.42 0.92 16 13 N -0.83 -12.53 8.94 -5.65 -0.05 -12.58 16 14 C 0.53 7.85 6.81 -10.98 -0.07 7.78 16 15 O -0.51 -9.17 13.94 5.55 0.08 -9.09 16 16 N -0.68 -8.07 5.34 -9.89 -0.05 -8.12 16 17 C 0.16 1.89 6.27 -83.74 -0.53 1.36 16 18 C -0.13 -1.22 9.95 -39.31 -0.39 -1.61 16 19 C -0.10 -0.89 10.02 -39.67 -0.40 -1.29 16 20 C -0.09 -0.95 9.68 -39.16 -0.38 -1.33 16 21 C -0.01 -0.08 5.87 -105.01 -0.62 -0.70 16 22 C 0.24 3.17 7.90 -13.89 -0.11 3.06 16 23 N -0.48 -5.95 10.91 -11.72 -0.13 -6.08 16 24 C -0.04 -0.40 11.87 -17.84 -0.21 -0.61 16 25 C -0.07 -0.66 12.17 29.43 0.36 -0.30 16 26 O -0.19 -2.45 10.52 4.06 0.04 -2.41 16 27 C -0.09 -1.25 8.32 -38.99 -0.32 -1.58 16 28 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 29 H 0.02 0.40 7.20 -51.93 -0.37 0.03 16 30 H 0.01 0.25 6.30 -51.93 -0.33 -0.08 16 31 H 0.06 1.20 8.14 -51.92 -0.42 0.78 16 32 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 33 H 0.35 5.41 8.58 -39.29 -0.34 5.08 16 34 H 0.35 5.14 7.55 -39.29 -0.30 4.84 16 35 H 0.42 3.76 8.82 -40.82 -0.36 3.40 16 36 H 0.13 1.00 8.06 -52.49 -0.42 0.57 16 37 H 0.14 0.81 8.06 -52.49 -0.42 0.39 16 38 H 0.14 1.30 7.83 -52.49 -0.41 0.89 16 39 H 0.19 1.08 8.06 -52.48 -0.42 0.66 16 40 H 0.22 0.97 8.06 -52.49 -0.42 0.55 16 41 H 0.14 2.23 6.26 -52.48 -0.33 1.90 16 LS Contribution 353.12 15.07 5.32 5.32 Total: -1.00 -34.20 353.12 -7.22 -41.42 By element: Atomic # 1 Polarization: 16.53 SS G_CDS: -4.98 Total: 11.55 kcal Atomic # 6 Polarization: -6.28 SS G_CDS: -3.56 Total: -9.83 kcal Atomic # 7 Polarization: -53.46 SS G_CDS: 0.54 Total: -52.92 kcal Atomic # 8 Polarization: -11.62 SS G_CDS: 0.12 Total: -11.50 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -4.67 Total: 15.96 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -34.20 -7.22 -41.42 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424173730.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.641 kcal (2) G-P(sol) polarization free energy of solvation -34.199 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.442 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.222 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.421 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.220 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds